Wall clock time and date at job start Tue Mar 31 2020 11:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99562 * 2 1 4 4 C 1.50705 * 109.46862 * 269.99539 * 3 2 1 5 5 H 1.07997 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99906 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00007 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99951 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46922 * 90.00140 * 8 6 4 10 10 H 1.48498 * 109.46870 * 210.00051 * 8 6 4 11 11 H 1.48498 * 109.47002 * 330.00098 * 8 6 4 12 12 C 1.39673 * 120.00476 * 179.97438 * 2 1 3 13 13 C 1.38913 * 120.07019 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92415 * 179.97438 * 13 12 2 15 15 C 1.38285 * 120.07208 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.92419 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47107 * 89.99664 * 16 15 14 18 18 C 1.47632 * 111.00263 * 298.89307 * 17 16 15 19 19 C 1.50815 * 108.05505 * 150.34590 * 18 17 16 20 20 C 1.53822 * 111.62307 * 95.05782 * 19 18 17 21 21 C 1.54171 * 111.96874 * 319.04229 * 20 19 18 22 22 H 1.08997 * 108.85363 * 79.29203 * 21 20 19 23 23 N 1.46898 * 108.85654 * 197.68250 * 21 20 19 24 24 C 1.50756 * 112.61005 * 318.48827 * 21 20 19 25 25 C 1.39777 * 111.00067 * 169.99717 * 17 16 15 26 26 C 1.38286 * 120.15383 * 0.26802 * 15 14 13 27 27 C 1.38108 * 120.06868 * 359.45265 * 26 15 14 28 28 H 1.08997 * 109.47317 * 270.00304 * 1 2 3 29 29 H 1.09003 * 109.47130 * 30.00514 * 1 2 3 30 30 H 1.09003 * 109.46996 * 150.00104 * 1 2 3 31 31 H 1.08996 * 109.47807 * 29.99582 * 3 2 1 32 32 H 1.09005 * 109.47199 * 149.99714 * 3 2 1 33 33 H 0.97007 * 119.99849 * 180.02562 * 7 6 4 34 34 H 1.08000 * 120.03949 * 0.02562 * 13 12 2 35 35 H 1.07993 * 119.96110 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47152 * 329.99751 * 16 15 14 37 37 H 1.09001 * 109.46980 * 209.99852 * 16 15 14 38 38 H 1.08998 * 109.74631 * 269.98721 * 18 17 16 39 39 H 1.09005 * 109.74153 * 30.70867 * 18 17 16 40 40 H 1.09003 * 109.05275 * 334.50317 * 19 18 17 41 41 H 1.09000 * 108.99405 * 215.57036 * 19 18 17 42 42 H 1.08997 * 108.98475 * 198.40350 * 20 19 18 43 43 H 1.09000 * 108.91319 * 79.64060 * 20 19 18 44 44 H 1.00899 * 110.99716 * 303.08829 * 23 21 20 45 45 H 1.00901 * 111.00258 * 67.03657 * 23 21 20 46 46 H 1.09002 * 109.54707 * 333.15715 * 24 21 20 47 47 H 1.08995 * 109.54687 * 212.87885 * 24 21 20 48 48 H 1.09000 * 109.02466 * 309.72205 * 25 17 16 49 49 H 1.09004 * 109.01730 * 68.61908 * 25 17 16 50 50 H 1.07999 * 119.96544 * 179.70952 * 26 15 14 51 51 H 1.08005 * 120.03586 * 180.27157 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6729 7 7 3.3456 3.2573 -2.9128 8 14 3.7336 3.9289 -0.2530 9 1 5.1067 3.5071 0.1237 10 1 3.7494 5.3555 -0.6650 11 1 2.8270 3.7598 0.9109 12 6 2.1635 -1.2095 0.0005 13 6 1.4705 -2.4135 0.0016 14 6 2.1641 -3.6077 0.0016 15 6 3.5470 -3.6058 0.0011 16 6 4.3006 -4.9109 0.0017 17 7 4.5448 -5.3359 -1.3831 18 6 3.2738 -5.5488 -2.1033 19 6 3.5091 -5.2550 -3.5637 20 6 3.8285 -6.5348 -4.3550 21 6 4.7692 -7.4752 -3.5755 22 1 4.1858 -8.0231 -2.8357 23 7 5.3639 -8.4364 -4.5138 24 6 5.8765 -6.7335 -2.8708 25 6 5.4304 -6.4164 -1.4267 26 6 4.2400 -2.4091 0.0061 27 6 3.5525 -1.2113 0.0003 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1386 0.5139 33 1 3.8230 4.0829 -3.0900 34 1 0.3905 -2.4156 0.0016 35 1 1.6260 -4.5440 0.0020 36 1 3.7117 -5.6702 0.5163 37 1 5.2532 -4.7801 0.5150 38 1 2.9511 -6.5830 -1.9830 39 1 2.5110 -4.8764 -1.7106 40 1 4.3445 -4.5612 -3.6569 41 1 2.6146 -4.7926 -3.9811 42 1 4.3029 -6.2600 -5.2971 43 1 2.8976 -7.0606 -4.5672 44 1 4.6490 -8.9521 -5.0046 45 1 5.9845 -7.9734 -5.1609 46 1 6.0872 -5.8040 -3.3997 47 1 6.7731 -7.3528 -2.8477 48 1 6.3095 -6.1798 -0.8272 49 1 4.9401 -7.2947 -1.0066 50 1 5.3200 -2.4112 0.0104 51 1 4.0943 -0.2770 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205117569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:28 Heat of formation + Delta-G solvation = 23.514714 kcal Electronic energy + Delta-G solvation = -27082.184462 eV Core-core repulsion = 23594.410262 eV Total energy + Delta-G solvation = -3487.774200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98694 -40.02881 -37.68290 -36.34473 -34.71140 -33.55506 -32.28822 -31.99290 -30.39700 -29.95340 -27.77593 -26.77321 -25.35125 -24.72438 -23.48199 -22.94618 -21.70702 -21.00434 -20.30166 -19.08239 -18.14498 -17.24337 -16.93616 -16.81718 -16.49859 -16.08782 -16.06237 -15.64858 -15.23940 -15.21066 -15.02680 -14.78552 -14.46316 -14.29313 -14.27809 -13.97927 -13.49407 -13.33433 -13.22836 -13.13173 -12.94263 -12.71037 -12.56722 -12.42176 -12.39054 -12.14343 -12.03332 -11.85778 -11.77523 -11.66214 -11.50785 -11.38684 -11.24091 -10.82614 -10.37299 -9.64039 -9.59391 -9.00167 -8.33721 -7.89940 -6.38946 0.70390 0.83532 1.33937 1.34727 1.45293 2.30146 2.54623 2.92961 3.00325 3.34976 3.62295 3.80949 3.90228 4.04493 4.07517 4.18263 4.20535 4.24984 4.28640 4.40762 4.46204 4.54442 4.61540 4.63799 4.69121 4.71827 4.75799 4.79279 4.81880 4.82611 4.88582 4.91259 5.02741 5.06202 5.09149 5.15391 5.18260 5.25453 5.29936 5.41296 5.45577 5.47532 5.60625 5.65409 5.93789 6.09264 6.21365 6.24942 6.29142 6.59629 6.59871 6.64753 6.69970 6.88085 7.26564 8.83776 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.002979 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.898508 B = 9397.205565 C = 9909.630209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.535 4.535 5 H 0.024 0.976 6 C 0.012 3.988 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.243 1.243 12 C 0.212 3.788 13 C -0.215 4.215 14 C -0.062 4.062 15 C -0.151 4.151 16 C 0.118 3.882 17 N -0.562 5.562 18 C 0.062 3.938 19 C -0.112 4.112 20 C -0.142 4.142 21 C 0.097 3.903 22 H 0.069 0.931 23 N -0.849 5.849 24 C -0.109 4.109 25 C 0.080 3.920 26 C -0.056 4.056 27 C -0.217 4.217 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.268 0.732 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.345 0.655 45 H 0.343 0.657 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.022 0.978 50 H 0.122 0.878 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 -22.312 4.660 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.574 4.574 5 H 0.042 0.958 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.769 3.231 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.166 1.166 12 C 0.107 3.893 13 C -0.238 4.238 14 C -0.081 4.081 15 C -0.153 4.153 16 C -0.008 4.008 17 N -0.286 5.286 18 C -0.065 4.065 19 C -0.151 4.151 20 C -0.182 4.182 21 C -0.014 4.014 22 H 0.087 0.913 23 N -0.378 5.378 24 C -0.147 4.147 25 C -0.049 4.049 26 C -0.075 4.075 27 C -0.240 4.240 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.040 0.960 50 H 0.140 0.860 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.893 -22.017 4.975 22.590 hybrid contribution -0.556 1.261 -0.688 1.540 sum 0.337 -20.756 4.287 21.197 Atomic orbital electron populations 1.21626 0.79186 1.02447 1.01291 1.46687 1.05596 1.03312 1.78135 1.19326 0.92578 0.82462 0.94700 1.21662 1.36423 1.06665 0.92665 0.95799 1.25872 0.95506 0.98785 0.98467 1.70069 1.42713 1.24441 1.21405 0.85738 0.79866 0.77799 0.79735 1.19053 1.20549 1.16622 1.18185 0.91625 0.86453 0.92998 1.20773 1.00016 0.90744 1.12269 1.20878 0.93483 0.97050 0.96731 1.19498 0.93476 0.94440 1.07932 1.20797 0.99432 0.92280 0.88285 1.58769 1.15104 1.39527 1.15213 1.21894 0.90891 0.99908 0.93759 1.21284 1.01139 0.97559 0.95118 1.22733 1.00179 0.96464 0.98787 1.21293 0.94112 0.91504 0.94525 0.91301 1.59172 1.24012 1.29650 1.24985 1.21497 0.98226 0.99812 0.95168 1.20880 0.95990 0.91107 0.96946 1.20789 0.99431 0.91149 0.96166 1.20798 0.93118 0.98702 1.11335 0.92001 0.92664 0.90823 0.94680 0.95343 0.92335 0.85024 0.84305 0.93231 0.89801 0.93484 0.90477 0.92659 0.92825 0.92422 0.91744 0.84189 0.84380 0.92241 0.90006 0.90573 0.95997 0.85968 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.24 10.19 127.77 1.30 4.55 16 2 N -0.63 -26.37 2.99 -726.54 -2.17 -28.54 16 3 C 0.23 11.06 3.98 85.63 0.34 11.40 16 4 C -0.54 -31.03 9.94 25.60 0.25 -30.77 16 5 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 6 C 0.01 0.68 5.47 84.66 0.46 1.14 16 7 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 8 Si 0.95 43.21 27.47 68.60 1.88 45.10 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 12 C 0.21 8.36 6.55 38.21 0.25 8.61 16 13 C -0.22 -6.88 9.21 22.40 0.21 -6.67 16 14 C -0.06 -1.69 7.71 22.25 0.17 -1.52 16 15 C -0.15 -4.21 4.88 -19.84 -0.10 -4.30 16 16 C 0.12 2.57 5.13 85.56 0.44 3.01 16 17 N -0.56 -12.36 3.96 -917.80 -3.64 -15.99 16 18 C 0.06 1.34 5.16 85.45 0.44 1.78 16 19 C -0.11 -2.54 5.41 30.16 0.16 -2.37 16 20 C -0.14 -2.49 5.45 31.27 0.17 -2.32 16 21 C 0.10 1.59 2.73 44.58 0.12 1.71 16 22 H 0.07 1.21 6.57 -2.39 -0.02 1.19 16 23 N -0.85 -11.99 9.09 -170.07 -1.55 -13.54 16 24 C -0.11 -1.95 5.25 30.35 0.16 -1.79 16 25 C 0.08 1.49 4.93 88.07 0.43 1.92 16 26 C -0.06 -1.87 9.69 22.25 0.22 -1.66 16 27 C -0.22 -8.77 9.21 22.40 0.21 -8.56 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 30 H 0.07 2.16 6.20 -2.39 -0.01 2.14 16 31 H 0.04 1.61 7.13 -2.39 -0.02 1.59 16 32 H 0.03 1.35 5.62 -2.38 -0.01 1.34 16 33 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 34 H 0.13 3.65 6.14 -2.91 -0.02 3.63 16 35 H 0.14 2.90 7.54 -2.91 -0.02 2.87 16 36 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 37 H 0.08 1.69 7.77 -2.39 -0.02 1.67 16 38 H 0.05 0.90 6.66 -2.39 -0.02 0.88 16 39 H 0.08 1.84 4.46 -2.38 -0.01 1.83 16 40 H 0.05 1.51 7.26 -2.39 -0.02 1.49 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.35 3.98 8.99 -89.69 -0.81 3.17 16 45 H 0.34 4.38 8.97 -89.69 -0.80 3.58 16 46 H 0.06 1.25 7.11 -2.39 -0.02 1.23 16 47 H 0.08 1.39 7.96 -2.39 -0.02 1.37 16 48 H 0.08 1.32 7.80 -2.39 -0.02 1.31 16 49 H 0.02 0.39 7.54 -2.39 -0.02 0.37 16 50 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 51 H 0.10 4.46 6.14 -2.91 -0.02 4.44 16 Total: -1.00 -67.58 382.11 -0.67 -68.25 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.73 Total: 29.65 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 5.24 Total: -25.85 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.06 Total: -117.14 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Total: -67.58 -0.67 -68.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205117569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.765 kcal (2) G-P(sol) polarization free energy of solvation -67.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds