Wall clock time and date at job start Tue Mar 31 2020 11:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48496 * 109.47664 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.46976 * 300.00382 * 3 2 1 6 6 H 1.48501 * 109.46893 * 59.99547 * 3 2 1 7 7 C 1.37881 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00008 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47061 * 300.00718 * 9 7 2 11 11 C 1.53007 * 109.46770 * 60.00536 * 9 7 2 12 12 Cl 1.80292 * 109.46945 * 185.00030 * 11 9 7 13 13 O 1.42897 * 109.47015 * 179.97438 * 9 7 2 14 14 C 1.35903 * 116.99343 * 146.94450 * 13 9 7 15 15 C 1.38726 * 120.06029 * 356.51409 * 14 13 9 16 16 C 1.38141 * 119.94593 * 179.75170 * 15 14 13 17 17 C 1.38273 * 120.05705 * 0.25014 * 16 15 14 18 18 C 1.50694 * 119.94609 * 179.97438 * 17 16 15 19 19 Br 1.96595 * 109.47519 * 89.99755 * 18 17 16 20 20 C 1.38262 * 120.10888 * 0.02562 * 17 16 15 21 21 C 1.38148 * 120.05825 * 0.02562 * 20 17 16 22 22 H 0.96996 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46616 * 304.99483 * 11 9 7 24 24 H 1.08994 * 109.47009 * 64.99621 * 11 9 7 25 25 H 1.07998 * 120.02927 * 0.02562 * 15 14 13 26 26 H 1.08003 * 119.97331 * 180.27480 * 16 15 14 27 27 H 1.09001 * 109.47350 * 210.00161 * 18 17 16 28 28 H 1.09002 * 109.46836 * 329.99847 * 18 17 16 29 29 H 1.07994 * 119.97440 * 180.02562 * 20 17 16 30 30 H 1.07993 * 120.02879 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5800 -1.2496 12 17 -0.6394 -4.0714 -1.1774 13 8 2.1797 -3.5853 -0.0017 14 6 1.8096 -4.7140 0.6586 15 6 0.6104 -4.7501 1.3551 16 6 0.2341 -5.9003 2.0212 17 6 1.0541 -7.0135 1.9984 18 6 0.6414 -8.2667 2.7264 19 35 -0.3994 -9.4149 1.5166 20 6 2.2524 -6.9783 1.3097 21 6 2.6337 -5.8301 0.6428 22 1 -0.4850 0.8400 0.0004 23 1 -0.2764 -1.7043 -1.2950 24 1 1.0025 -2.6115 -2.1375 25 1 -0.0306 -3.8811 1.3730 26 1 -0.7015 -5.9303 2.5599 27 1 1.5301 -8.8022 3.0605 28 1 0.0312 -8.0012 3.5897 29 1 2.8909 -7.8491 1.2929 30 1 3.5697 -5.8032 0.1047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205185070.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:38 Heat of formation + Delta-G solvation = -33.934846 kcal Electronic energy + Delta-G solvation = -16533.553518 eV Core-core repulsion = 13593.792956 eV Total energy + Delta-G solvation = -2939.760562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.976 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56042 -37.25734 -34.87488 -33.58668 -32.30018 -30.67135 -29.72162 -28.91497 -25.47820 -25.19938 -22.94902 -21.48083 -20.15304 -17.58458 -16.88585 -15.46395 -15.22553 -14.70473 -14.50951 -14.07912 -13.59981 -13.41900 -13.24828 -12.74935 -12.67554 -12.11483 -11.91123 -11.55032 -11.47591 -11.16249 -11.00701 -10.68912 -10.62119 -10.21537 -9.79632 -9.77707 -9.65395 -9.43161 -9.16541 -8.71559 -8.48986 -7.35801 -6.47934 -4.55625 1.34992 1.82096 2.32217 3.08608 3.18310 3.23461 3.38005 3.99690 4.24964 4.39001 4.77038 4.82129 4.88795 5.28863 5.38534 5.42555 5.77827 5.92589 6.05313 6.22374 6.25438 6.43017 6.57217 6.76922 6.89849 6.94493 7.10469 7.27395 7.51025 7.71697 8.28122 8.63097 9.12520 10.59248 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.031903 B = 0.003563 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.450251 B = 7857.687959 C = 8253.144825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.077 0.923 9 C 0.204 3.796 10 H 0.052 0.948 11 C -0.037 4.037 12 Cl -0.238 7.238 13 O -0.309 6.309 14 C 0.169 3.831 15 C -0.191 4.191 16 C -0.063 4.063 17 C -0.161 4.161 18 C -0.018 4.018 19 Br -0.174 7.174 20 C -0.067 4.067 21 C -0.170 4.170 22 H 0.272 0.728 23 H 0.134 0.866 24 H 0.074 0.926 25 H 0.140 0.860 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -14.031 4.323 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.560 4.560 8 H 0.095 0.905 9 C 0.149 3.851 10 H 0.070 0.930 11 C -0.100 4.100 12 Cl -0.212 7.212 13 O -0.222 6.222 14 C 0.121 3.879 15 C -0.210 4.210 16 C -0.082 4.082 17 C -0.162 4.162 18 C -0.132 4.132 19 Br -0.093 7.093 20 C -0.086 4.086 21 C -0.189 4.189 22 H 0.082 0.918 23 H 0.151 0.849 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.135 0.865 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.403 -14.354 3.817 14.859 hybrid contribution 0.229 1.128 0.205 1.170 sum -0.174 -13.226 4.023 13.825 Atomic orbital electron populations 1.69802 1.06007 1.28036 1.48720 1.24983 0.95182 0.99862 0.93904 0.86127 0.80019 0.81616 0.77992 1.19254 1.20492 1.20477 1.21064 0.94402 0.87887 1.52638 0.90486 1.20567 0.87472 0.82942 0.94073 0.93020 1.25750 0.95485 0.86834 1.01916 1.98651 1.75726 1.47823 1.98986 1.86146 1.46434 1.21535 1.68097 1.19206 0.92034 0.87359 0.89313 1.21480 0.98076 1.00129 1.01269 1.20657 0.98012 0.92008 0.97512 1.19162 0.97337 0.94426 1.05321 1.23427 1.00288 0.93799 0.95699 1.97396 1.75225 1.68753 1.67962 1.20568 0.95349 0.96907 0.95764 1.20322 1.01254 0.91900 1.05384 0.91816 0.84871 0.90734 0.84282 0.86541 0.88062 0.88044 0.86244 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.69 11.29 55.43 0.63 -22.07 16 2 C 0.06 1.60 5.29 -17.82 -0.09 1.50 16 3 Si 0.92 19.55 29.54 -169.99 -5.02 14.52 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.52 -13.34 8.89 -34.44 -0.31 -13.65 16 8 H 0.08 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.20 4.85 2.19 -27.88 -0.06 4.79 16 10 H 0.05 1.29 5.39 -51.93 -0.28 1.01 16 11 C -0.04 -0.84 6.17 37.16 0.23 -0.61 16 12 Cl -0.24 -4.89 25.62 -51.86 -1.33 -6.22 16 13 O -0.31 -7.01 9.73 -19.44 -0.19 -7.20 16 14 C 0.17 3.35 5.96 -39.21 -0.23 3.11 16 15 C -0.19 -3.59 7.05 -39.44 -0.28 -3.87 16 16 C -0.06 -0.99 9.69 -39.60 -0.38 -1.38 16 17 C -0.16 -2.27 5.19 -104.60 -0.54 -2.82 16 18 C -0.02 -0.20 6.73 36.00 0.24 0.05 16 19 Br -0.17 -2.16 33.92 -68.01 -2.31 -4.46 16 20 C -0.07 -0.96 9.69 -39.61 -0.38 -1.35 16 21 C -0.17 -2.88 9.99 -39.43 -0.39 -3.28 16 22 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 23 H 0.13 3.21 5.95 -51.93 -0.31 2.90 16 24 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 25 H 0.14 2.83 5.12 -52.49 -0.27 2.56 16 26 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 27 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -25.64 289.33 -9.00 -34.64 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -2.93 Total: 3.92 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.21 Total: -17.49 kcal Atomic # 7 Polarization: -22.69 SS G_CDS: 0.63 Total: -22.07 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.19 Total: -7.20 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 17 Polarization: -4.89 SS G_CDS: -1.33 Total: -6.22 kcal Atomic # 35 Polarization: -2.16 SS G_CDS: -2.31 Total: -4.46 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.64 -9.00 -34.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205185070.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.704 kcal (2) G-P(sol) polarization free energy of solvation -25.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds