Wall clock time and date at job start Tue Mar 31 2020 11:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48496 * 109.47664 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.46976 * 300.00382 * 3 2 1 6 6 H 1.48501 * 109.46893 * 59.99547 * 3 2 1 7 7 C 1.37881 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00008 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47061 * 300.00718 * 9 7 2 11 11 C 1.53007 * 109.46770 * 60.00536 * 9 7 2 12 12 Cl 1.80292 * 109.46945 * 185.00030 * 11 9 7 13 13 O 1.42897 * 109.47015 * 179.97438 * 9 7 2 14 14 C 1.35903 * 116.99343 * 146.94450 * 13 9 7 15 15 C 1.38726 * 120.06029 * 356.51409 * 14 13 9 16 16 C 1.38141 * 119.94593 * 179.75170 * 15 14 13 17 17 C 1.38273 * 120.05705 * 0.25014 * 16 15 14 18 18 C 1.50694 * 119.94609 * 179.97438 * 17 16 15 19 19 Br 1.96595 * 109.47519 * 89.99755 * 18 17 16 20 20 C 1.38262 * 120.10888 * 0.02562 * 17 16 15 21 21 C 1.38148 * 120.05825 * 0.02562 * 20 17 16 22 22 H 0.96996 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46616 * 304.99483 * 11 9 7 24 24 H 1.08994 * 109.47009 * 64.99621 * 11 9 7 25 25 H 1.07998 * 120.02927 * 0.02562 * 15 14 13 26 26 H 1.08003 * 119.97331 * 180.27480 * 16 15 14 27 27 H 1.09001 * 109.47350 * 210.00161 * 18 17 16 28 28 H 1.09002 * 109.46836 * 329.99847 * 18 17 16 29 29 H 1.07994 * 119.97440 * 180.02562 * 20 17 16 30 30 H 1.07993 * 120.02879 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5800 -1.2496 12 17 -0.6394 -4.0714 -1.1774 13 8 2.1797 -3.5853 -0.0017 14 6 1.8096 -4.7140 0.6586 15 6 0.6104 -4.7501 1.3551 16 6 0.2341 -5.9003 2.0212 17 6 1.0541 -7.0135 1.9984 18 6 0.6414 -8.2667 2.7264 19 35 -0.3994 -9.4149 1.5166 20 6 2.2524 -6.9783 1.3097 21 6 2.6337 -5.8301 0.6428 22 1 -0.4850 0.8400 0.0004 23 1 -0.2764 -1.7043 -1.2950 24 1 1.0025 -2.6115 -2.1375 25 1 -0.0306 -3.8811 1.3730 26 1 -0.7015 -5.9303 2.5599 27 1 1.5301 -8.8022 3.0605 28 1 0.0312 -8.0012 3.5897 29 1 2.8909 -7.8491 1.2929 30 1 3.5697 -5.8032 0.1047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205185070.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:38 Heat of formation + Delta-G solvation = -45.649553 kcal Electronic energy + Delta-G solvation = -16534.061506 eV Core-core repulsion = 13593.792956 eV Total energy + Delta-G solvation = -2940.268550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.976 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.00276 -38.71567 -36.59917 -35.41181 -33.49289 -32.03159 -31.26861 -30.19382 -27.30721 -26.41289 -24.42048 -22.92073 -21.59143 -19.18055 -18.67667 -17.12933 -16.51968 -16.22395 -16.09685 -15.48891 -15.12374 -14.61385 -14.45905 -14.26987 -13.94140 -13.84434 -13.40627 -13.07865 -13.01967 -12.71189 -12.68918 -12.28328 -12.14906 -11.79784 -11.39652 -11.17288 -10.91602 -10.72337 -10.69864 -10.56674 -9.79241 -8.77985 -8.38237 -6.54089 0.22600 0.52212 1.23190 1.38396 1.43269 1.55663 1.60366 2.27370 2.72953 2.96605 2.98468 3.70520 3.88004 4.04245 4.24783 4.30362 4.37630 4.47537 4.58451 4.62999 4.85286 4.92795 5.15727 5.21224 5.40985 5.52051 5.61420 5.64118 5.85397 5.97413 6.48378 6.84453 7.19065 8.68532 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.031903 B = 0.003563 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.450251 B = 7857.687959 C = 8253.144825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.027 3.973 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.212 3.788 10 H 0.033 0.967 11 C -0.027 4.027 12 Cl -0.220 7.220 13 O -0.330 6.330 14 C 0.130 3.870 15 C -0.205 4.205 16 C -0.067 4.067 17 C -0.147 4.147 18 C -0.014 4.014 19 Br -0.184 7.184 20 C -0.060 4.060 21 C -0.175 4.175 22 H 0.276 0.724 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.156 0.844 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -15.588 5.117 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.157 3.843 10 H 0.051 0.949 11 C -0.090 4.090 12 Cl -0.194 7.194 13 O -0.244 6.244 14 C 0.084 3.916 15 C -0.224 4.224 16 C -0.086 4.086 17 C -0.148 4.148 18 C -0.128 4.128 19 Br -0.104 7.104 20 C -0.078 4.078 21 C -0.193 4.193 22 H 0.085 0.915 23 H 0.135 0.865 24 H 0.092 0.908 25 H 0.132 0.868 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.174 0.826 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.015 -15.936 4.616 16.591 hybrid contribution 0.063 1.433 0.029 1.435 sum 0.078 -14.502 4.645 15.228 Atomic orbital electron populations 1.69888 1.07071 1.28948 1.48742 1.25717 0.95931 1.02614 0.93134 0.85199 0.78705 0.77759 0.78236 1.19229 1.19690 1.19948 1.21286 0.94141 0.89419 1.53769 0.91598 1.20269 0.87379 0.83111 0.93588 0.94927 1.25410 0.95204 0.87015 1.01408 1.98640 1.75142 1.46611 1.99000 1.86071 1.46487 1.22319 1.69513 1.19549 0.93596 0.87410 0.91076 1.21349 0.97825 1.00537 1.02710 1.20900 0.99032 0.91597 0.97093 1.19506 0.96449 0.94986 1.03876 1.23568 1.01785 0.92165 0.95293 1.97420 1.75617 1.68803 1.68566 1.20982 0.95748 0.96937 0.94174 1.20594 1.01246 0.91813 1.05694 0.91463 0.86526 0.90796 0.86758 0.84789 0.85115 0.86070 0.82600 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.36 11.29 21.45 0.24 -47.12 16 2 C 0.03 1.39 5.29 84.66 0.45 1.83 16 3 Si 0.98 40.31 29.54 68.60 2.03 42.34 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.55 -29.01 8.89 25.60 0.23 -28.78 16 8 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 10.50 2.19 29.85 0.07 10.57 16 10 H 0.03 1.74 5.39 -2.39 -0.01 1.73 16 11 C -0.03 -1.28 6.17 71.98 0.44 -0.83 16 12 Cl -0.22 -9.18 25.62 -2.72 -0.07 -9.25 16 13 O -0.33 -15.52 9.73 -92.46 -0.90 -16.42 16 14 C 0.13 5.24 5.96 22.51 0.13 5.37 16 15 C -0.21 -7.84 7.05 22.36 0.16 -7.68 16 16 C -0.07 -2.04 9.69 22.25 0.22 -1.82 16 17 C -0.15 -3.70 5.19 -19.85 -0.10 -3.80 16 18 C -0.01 -0.25 6.73 71.23 0.48 0.22 16 19 Br -0.18 -4.03 33.92 -20.37 -0.69 -4.72 16 20 C -0.06 -1.54 9.69 22.25 0.22 -1.33 16 21 C -0.17 -5.75 9.99 22.37 0.22 -5.53 16 22 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 23 H 0.12 5.83 5.95 -2.39 -0.01 5.81 16 24 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 25 H 0.11 4.89 5.12 -2.91 -0.01 4.88 16 26 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 27 H 0.13 1.64 8.08 -2.39 -0.02 1.62 16 28 H 0.12 1.75 8.08 -2.39 -0.02 1.73 16 29 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -56.20 289.33 4.27 -51.92 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.16 Total: 15.02 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 2.51 Total: -31.77 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.24 Total: -47.12 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.90 Total: -16.42 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 17 Polarization: -9.18 SS G_CDS: -0.07 Total: -9.25 kcal Atomic # 35 Polarization: -4.03 SS G_CDS: -0.69 Total: -4.72 kcal Total: -56.20 4.27 -51.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205185070.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.273 kcal (2) G-P(sol) polarization free energy of solvation -56.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds