Wall clock time and date at job start Tue Mar 31 2020 12:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34760 * 116.99546 * 2 1 4 4 O 1.21512 * 120.00538 * 0.02562 * 3 2 1 5 5 C 1.47336 * 119.99600 * 180.02562 * 3 2 1 6 6 C 1.39810 * 120.18585 * 0.22924 * 5 3 2 7 7 C 1.37708 * 119.91317 * 180.27082 * 6 5 3 8 8 C 1.38715 * 120.29808 * 359.75444 * 7 6 5 9 9 Cl 1.73592 * 119.81418 * 180.02562 * 8 7 6 10 10 C 1.38209 * 120.37445 * 359.97438 * 8 7 6 11 11 C 1.38646 * 120.07529 * 0.02562 * 10 8 7 12 12 O 1.35639 * 120.14365 * 179.97438 * 11 10 8 13 13 C 1.42898 * 117.00416 * 4.86706 * 12 11 10 14 14 H 1.09002 * 109.46950 * 21.78455 * 13 12 11 15 15 C 1.50701 * 109.47179 * 141.78933 * 13 12 11 16 16 H 1.07999 * 120.00254 * 95.35824 * 15 13 12 17 17 C 1.37881 * 119.99428 * 275.35311 * 15 13 12 18 18 N 1.31512 * 120.00199 * 355.27898 * 17 15 13 19 19 Si 1.86804 * 119.99626 * 175.27689 * 17 15 13 20 20 H 1.48498 * 109.46933 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46924 * 120.00004 * 19 17 15 22 22 H 1.48497 * 109.47004 * 240.00263 * 19 17 15 23 23 C 1.53007 * 109.47010 * 261.79011 * 13 12 11 24 24 Cl 1.80298 * 109.47342 * 64.65327 * 23 13 12 25 25 H 1.08993 * 109.47228 * 59.99530 * 1 2 3 26 26 H 1.08996 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46939 * 299.99737 * 1 2 3 28 28 H 1.07997 * 120.04551 * 0.02937 * 6 5 3 29 29 H 1.08003 * 119.84952 * 179.72250 * 7 6 5 30 30 H 1.07994 * 119.96496 * 180.02562 * 10 8 7 31 31 H 0.96996 * 120.00371 * 5.24851 * 18 17 15 32 32 H 1.09001 * 109.46913 * 184.65750 * 23 13 12 33 33 H 1.09004 * 109.46529 * 304.65637 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5351 1.2779 -0.0006 6 6 4.3004 0.1078 -0.0059 7 6 5.6752 0.1864 -0.0008 8 6 6.3055 1.4221 0.0046 9 17 8.0394 1.5065 0.0103 10 6 5.5609 2.5865 0.0043 11 6 4.1758 2.5254 -0.0009 12 8 3.4436 3.6672 -0.0006 13 6 4.1617 4.8984 -0.1030 14 1 5.1409 4.7123 -0.5442 15 6 3.3923 5.8578 -0.9740 16 1 2.7321 6.5847 -0.5245 17 6 3.5314 5.8075 -2.3449 18 7 4.4037 4.9865 -2.8876 19 14 2.4806 6.9055 -3.4311 20 1 1.5850 7.7309 -2.5816 21 1 3.3589 7.7944 -4.2333 22 1 1.6632 6.0643 -4.3418 23 6 4.3373 5.5038 1.2912 24 17 5.3733 4.4190 2.2914 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.8140 -0.8564 -0.0102 29 1 6.2653 -0.7181 -0.0004 30 1 6.0584 3.5449 0.0080 31 1 4.8946 4.3627 -2.3303 32 1 4.8114 6.4816 1.2056 33 1 3.3618 5.6132 1.7652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225382628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:57 Heat of formation + Delta-G solvation = -118.131194 kcal Electronic energy + Delta-G solvation = -22664.350989 eV Core-core repulsion = 18935.367085 eV Total energy + Delta-G solvation = -3728.983904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30688 -39.14806 -37.32615 -36.16554 -35.85209 -35.28124 -33.43837 -31.12752 -30.39310 -29.23252 -27.42405 -24.90509 -23.74060 -23.06402 -20.96466 -20.61117 -18.15838 -17.60967 -17.10668 -16.34511 -15.99982 -15.34099 -15.10275 -14.72864 -14.48347 -13.95943 -13.92763 -13.37215 -13.23717 -13.06202 -12.76449 -12.48386 -12.19063 -12.09555 -11.76188 -11.62106 -11.24803 -11.00644 -10.80178 -10.71709 -10.59376 -10.47556 -10.29575 -9.97552 -9.89945 -9.54184 -9.19230 -8.70922 -8.58146 -7.65969 -6.82257 -4.65391 0.95058 1.72955 2.25883 2.82904 2.92702 3.01947 3.26497 3.32572 3.46034 3.93803 4.05261 4.27818 4.98939 5.09645 5.16285 5.26328 5.30594 5.34924 5.40484 5.57126 5.63861 5.66962 5.82566 5.89327 6.09402 6.26559 6.33245 6.42628 6.53921 6.74131 6.89356 7.45079 7.97115 8.23841 8.29153 8.37561 9.12773 10.54569 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.009009 B = 0.006954 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.232741 B = 4025.760959 C = 5461.593306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.505 3.495 4 O -0.475 6.475 5 C -0.186 4.186 6 C -0.017 4.017 7 C -0.188 4.188 8 C 0.041 3.959 9 Cl -0.072 7.072 10 C -0.206 4.206 11 C 0.234 3.766 12 O -0.272 6.272 13 C 0.164 3.836 14 H 0.058 0.942 15 C -0.590 4.590 16 H 0.068 0.932 17 C 0.037 3.963 18 N -0.873 5.873 19 Si 1.082 2.918 20 H -0.283 1.283 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.029 4.029 24 Cl -0.217 7.217 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.273 0.727 32 H 0.101 0.899 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 -8.475 5.638 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.349 3.651 4 O -0.361 6.361 5 C -0.189 4.189 6 C -0.036 4.036 7 C -0.207 4.207 8 C 0.014 3.986 9 Cl -0.043 7.043 10 C -0.226 4.226 11 C 0.182 3.818 12 O -0.182 6.182 13 C 0.111 3.889 14 H 0.076 0.924 15 C -0.626 4.626 16 H 0.086 0.914 17 C -0.173 4.173 18 N -0.506 5.506 19 Si 0.908 3.092 20 H -0.209 1.209 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.092 4.092 24 Cl -0.191 7.191 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.168 0.832 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.196 -7.707 4.185 8.772 hybrid contribution 0.473 -0.451 1.687 1.809 sum 0.278 -8.158 5.872 10.055 Atomic orbital electron populations 1.23157 0.76807 1.02974 1.02532 1.86510 1.22915 1.33459 1.85519 1.20846 0.88784 0.81377 0.74089 1.90942 1.66081 1.35283 1.43752 1.18485 0.89543 0.92304 1.18537 1.21069 0.92625 0.97230 0.92647 1.20661 0.94333 0.96050 1.09651 1.20879 0.84073 0.94640 0.99054 1.98355 1.10625 1.98798 1.96560 1.21254 0.92804 0.99135 1.09361 1.19132 0.89317 0.87903 0.85479 1.86945 1.37099 1.12269 1.81861 1.21002 0.95997 0.81088 0.90782 0.92438 1.21914 1.31524 1.16180 0.93030 0.91380 1.26205 0.95952 0.98567 0.96566 1.70769 1.20374 1.19298 1.40185 0.83362 0.75486 0.75198 0.75170 1.20889 1.20742 1.20733 1.25248 0.95958 0.94776 0.93205 1.98679 1.73507 1.71474 1.75406 0.92013 0.88535 0.92171 0.83883 0.84825 0.83184 0.91532 0.88014 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.57 101.05 1.07 1.56 16 2 O -0.37 -5.86 9.81 -40.66 -0.40 -6.26 16 3 C 0.51 10.05 7.89 34.43 0.27 10.33 16 4 O -0.47 -11.10 14.95 -26.60 -0.40 -11.50 16 5 C -0.19 -3.64 5.89 -104.86 -0.62 -4.25 16 6 C -0.02 -0.27 9.61 -39.19 -0.38 -0.64 16 7 C -0.19 -2.81 9.80 -39.60 -0.39 -3.20 16 8 C 0.04 0.69 6.32 -39.42 -0.25 0.44 16 9 Cl -0.07 -1.09 28.94 -51.86 -1.50 -2.60 16 10 C -0.21 -4.06 6.98 -39.44 -0.28 -4.33 16 11 C 0.23 5.05 6.20 -38.68 -0.24 4.81 16 12 O -0.27 -6.64 7.76 -40.51 -0.31 -6.96 16 13 C 0.16 3.87 1.87 -27.88 -0.05 3.82 16 14 H 0.06 1.40 4.00 -51.93 -0.21 1.20 16 15 C -0.59 -15.39 8.69 -34.44 -0.30 -15.69 16 16 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.04 0.98 5.46 -17.82 -0.10 0.89 16 18 N -0.87 -24.58 13.62 55.43 0.76 -23.82 16 19 Si 1.08 23.78 29.91 -169.99 -5.08 18.70 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.03 -0.58 6.31 37.16 0.23 -0.34 16 24 Cl -0.22 -3.99 25.72 -51.86 -1.33 -5.32 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.14 1.79 7.61 -52.49 -0.40 1.39 16 29 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.15 3.07 4.88 -52.49 -0.26 2.81 16 31 H 0.27 7.66 6.66 -40.82 -0.27 7.39 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 317.33 15.07 4.78 4.78 Total: -1.00 -29.93 317.33 -7.39 -37.32 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -2.88 Total: 2.29 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.02 Total: -6.63 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.76 Total: -23.82 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.11 Total: -24.72 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.08 Total: 18.70 kcal Atomic # 17 Polarization: -5.08 SS G_CDS: -2.83 Total: -7.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.93 -7.39 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225382628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.813 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds