Wall clock time and date at job start Tue Mar 31 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38159 * 119.97921 * 2 1 4 4 C 1.38709 * 119.95683 * 180.02562 * 3 2 1 5 5 O 1.35909 * 120.04905 * 179.97438 * 4 3 2 6 6 C 1.42895 * 117.00300 * 176.53141 * 5 4 3 7 7 H 1.09000 * 109.47186 * 26.94588 * 6 5 4 8 8 C 1.50701 * 109.47231 * 146.94346 * 6 5 4 9 9 H 1.07998 * 120.00077 * 0.02562 * 8 6 5 10 10 C 1.37877 * 120.00019 * 180.02562 * 8 6 5 11 11 N 1.31516 * 120.00191 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 120.00098 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46873 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47089 * 119.99806 * 12 10 8 15 15 H 1.48495 * 109.46991 * 240.00174 * 12 10 8 16 16 C 1.53001 * 109.47245 * 266.94524 * 6 5 4 17 17 Cl 1.80301 * 109.46969 * 65.00218 * 16 6 5 18 18 C 1.38745 * 119.90624 * 359.97438 * 4 3 2 19 19 C 1.38124 * 119.95438 * 0.02562 * 18 4 3 20 20 C 1.38327 * 119.97479 * 180.02562 * 2 1 3 21 21 Br 1.89099 * 119.95475 * 0.27074 * 20 2 1 22 22 H 1.08996 * 109.47221 * 270.00352 * 1 2 3 23 23 H 1.09005 * 109.47149 * 30.00291 * 1 2 3 24 24 H 1.08995 * 109.47262 * 149.99900 * 1 2 3 25 25 H 1.08000 * 120.02415 * 359.97438 * 3 2 1 26 26 H 0.96996 * 120.00018 * 179.97438 * 11 10 8 27 27 H 1.09006 * 109.46915 * 184.99459 * 16 6 5 28 28 H 1.08995 * 109.47549 * 304.99878 * 16 6 5 29 29 H 1.07997 * 120.02648 * 180.02562 * 18 4 3 30 30 H 1.08001 * 119.97927 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1967 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2654 2.3724 -0.0011 6 6 5.6904 2.2970 0.0754 7 1 6.0272 1.3493 -0.3446 8 6 6.2962 3.4355 -0.7043 9 1 5.6570 4.1458 -1.2075 10 6 7.6665 3.5703 -0.7752 11 7 8.4450 2.7051 -0.1628 12 14 8.4174 4.9819 -1.7411 13 1 7.3346 5.8084 -2.3323 14 1 9.2409 5.8202 -0.8331 15 1 9.2737 4.4390 -2.8261 16 6 6.1283 2.3909 1.5384 17 17 5.5255 0.9504 2.4397 18 6 4.2757 -0.0068 -0.0005 19 6 3.5817 -1.2010 -0.0005 20 6 2.1981 -1.1983 -0.0005 21 35 1.2506 -2.8347 -0.0090 22 1 -0.3633 0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8899 -0.5138 25 1 1.6574 2.1321 -0.0004 26 1 9.4090 2.7998 -0.2130 27 1 7.2166 2.4228 1.5906 28 1 5.7165 3.2965 1.9836 29 1 5.3557 -0.0095 -0.0005 30 1 4.1194 -2.1377 -0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225752535.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:23 Heat of formation + Delta-G solvation = -43.345460 kcal Electronic energy + Delta-G solvation = -16630.841693 eV Core-core repulsion = 13690.673057 eV Total energy + Delta-G solvation = -2940.168637 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.976 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13499 -38.83041 -36.61967 -35.41080 -33.59304 -32.81867 -31.44406 -29.49986 -27.76806 -27.27496 -23.99336 -23.44553 -21.39639 -19.15041 -18.54822 -17.22098 -16.79591 -16.33550 -16.16106 -15.44618 -15.17288 -14.79148 -14.52833 -14.11861 -13.88807 -13.73829 -13.14009 -13.04365 -12.99563 -12.78912 -12.60694 -12.58415 -12.27871 -11.89926 -11.69065 -11.38843 -11.18586 -11.00407 -10.78029 -10.57308 -9.76853 -8.89635 -8.38940 -6.54626 0.28653 0.33550 0.72771 1.38452 1.43732 1.55768 1.58988 2.25428 2.62070 2.70724 2.96442 3.82501 3.85475 4.13764 4.25830 4.37504 4.41479 4.47041 4.70717 4.78399 4.81885 4.92603 5.13300 5.17677 5.27316 5.38879 5.45253 5.55480 5.75210 5.82498 6.44920 6.77088 7.18059 8.67947 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.003855 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.893034 B = 7262.074365 C = 7528.193910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.021 4.021 3 C -0.170 4.170 4 C 0.148 3.852 5 O -0.323 6.323 6 C 0.210 3.790 7 H 0.035 0.965 8 C -0.548 4.548 9 H 0.067 0.933 10 C 0.028 3.972 11 N -0.909 5.909 12 Si 0.977 3.023 13 H -0.268 1.268 14 H -0.271 1.271 15 H -0.275 1.275 16 C -0.027 4.027 17 Cl -0.221 7.221 18 C -0.206 4.206 19 C -0.053 4.053 20 C -0.149 4.149 21 Br -0.043 7.043 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.276 0.724 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 -8.141 0.789 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.023 4.023 3 C -0.189 4.189 4 C 0.101 3.899 5 O -0.237 6.237 6 C 0.155 3.845 7 H 0.052 0.948 8 C -0.586 4.586 9 H 0.085 0.915 10 C -0.173 4.173 11 N -0.546 5.546 12 Si 0.800 3.200 13 H -0.192 1.192 14 H -0.197 1.197 15 H -0.201 1.201 16 C -0.090 4.090 17 Cl -0.195 7.195 18 C -0.225 4.225 19 C -0.072 4.072 20 C -0.228 4.228 21 Br 0.042 6.958 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.162 0.838 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.948 -8.699 0.883 15.623 hybrid contribution 1.329 0.823 -0.205 1.576 sum -11.619 -7.876 0.678 14.053 Atomic orbital electron populations 1.21027 0.87840 1.04554 1.04050 1.19780 0.97783 0.89971 0.94786 1.20419 0.90331 0.99126 1.09057 1.19513 0.92638 0.85583 0.92127 1.86092 1.22921 1.28122 1.86538 1.20336 0.73774 0.98845 0.91566 0.94777 1.21265 0.92164 1.12384 1.32740 0.91470 1.25702 0.96621 0.99005 0.95999 1.69881 1.05537 1.36486 1.42679 0.85204 0.78205 0.78270 0.78270 1.19209 1.19659 1.20057 1.25425 1.03951 0.86359 0.93268 1.98641 1.90778 1.50258 1.79842 1.21368 1.00798 0.92241 1.08099 1.20934 0.92402 0.98028 0.95871 1.21563 0.94261 0.91705 1.15289 1.96548 1.74998 1.26215 1.98015 0.89292 0.89569 0.89884 0.83798 0.91431 0.86404 0.90528 0.85717 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 9.55 71.24 0.68 -1.75 16 2 C -0.02 -0.61 5.88 -19.86 -0.12 -0.72 16 3 C -0.17 -5.68 9.64 22.36 0.22 -5.46 16 4 C 0.15 5.94 5.96 22.50 0.13 6.07 16 5 O -0.32 -14.86 9.73 -92.52 -0.90 -15.76 16 6 C 0.21 10.20 2.19 29.85 0.07 10.27 16 7 H 0.03 1.78 5.39 -2.39 -0.01 1.77 16 8 C -0.55 -28.48 8.89 25.60 0.23 -28.25 16 9 H 0.07 3.54 7.81 -2.91 -0.02 3.51 16 10 C 0.03 1.41 5.29 84.65 0.45 1.86 16 11 N -0.91 -46.72 11.30 21.45 0.24 -46.48 16 12 Si 0.98 39.88 29.54 68.60 2.03 41.91 16 13 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 14 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 15 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 16 C -0.03 -1.23 6.17 71.98 0.44 -0.79 16 17 Cl -0.22 -8.99 25.62 -2.72 -0.07 -9.06 16 18 C -0.21 -7.91 7.05 22.36 0.16 -7.76 16 19 C -0.05 -1.72 9.78 22.27 0.22 -1.50 16 20 C -0.15 -4.40 6.22 22.32 0.14 -4.27 16 21 Br -0.04 -1.01 31.77 -20.37 -0.65 -1.66 16 22 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.09 1.52 8.09 -2.38 -0.02 1.50 16 24 H 0.08 1.58 6.63 -2.39 -0.02 1.57 16 25 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 27 H 0.12 5.76 5.96 -2.38 -0.01 5.74 16 28 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.13 5.27 5.11 -2.91 -0.01 5.25 16 30 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -53.01 285.59 4.43 -48.58 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.16 Total: 14.78 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 2.61 Total: -32.31 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.24 Total: -46.48 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.90 Total: -15.76 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 17 Polarization: -8.99 SS G_CDS: -0.07 Total: -9.06 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.65 Total: -1.66 kcal Total: -53.01 4.43 -48.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225752535.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.232 kcal (2) G-P(sol) polarization free energy of solvation -53.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds