Wall clock time and date at job start Tue Mar 31 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38281 * 119.94321 * 2 1 4 4 C 1.38145 * 120.07236 * 180.02562 * 3 2 1 5 5 C 1.38718 * 119.95232 * 359.97438 * 4 3 2 6 6 O 1.35919 * 120.05367 * 179.97438 * 5 4 3 7 7 C 1.42892 * 117.00419 * 5.57573 * 6 5 4 8 8 H 1.09002 * 109.47289 * 20.94539 * 7 6 5 9 9 C 1.50698 * 109.47306 * 140.94835 * 7 6 5 10 10 H 1.07997 * 120.00424 * 5.49138 * 9 7 6 11 11 C 1.37884 * 120.00216 * 185.49575 * 9 7 6 12 12 N 1.31509 * 120.00180 * 186.12421 * 11 9 7 13 13 Si 1.86801 * 119.99768 * 6.12030 * 11 9 7 14 14 H 1.48502 * 109.47447 * 270.00425 * 13 11 9 15 15 H 1.48505 * 109.47200 * 30.00380 * 13 11 9 16 16 H 1.48501 * 109.46771 * 150.00245 * 13 11 9 17 17 C 1.53002 * 109.47384 * 260.94859 * 7 6 5 18 18 Cl 1.80297 * 109.47142 * 64.63988 * 17 7 6 19 19 C 1.38783 * 119.88439 * 0.24637 * 5 4 3 20 20 Br 1.89103 * 120.03873 * 179.74935 * 19 5 4 21 21 C 1.38236 * 119.92774 * 359.49715 * 19 5 4 22 22 H 1.08997 * 109.47367 * 89.99963 * 1 2 3 23 23 H 1.09001 * 109.47746 * 210.00276 * 1 2 3 24 24 H 1.09008 * 109.47146 * 330.00248 * 1 2 3 25 25 H 1.08002 * 119.96236 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.02503 * 179.97438 * 4 3 2 27 27 H 0.97001 * 119.99905 * 354.97661 * 12 11 9 28 28 H 1.08998 * 109.47448 * 184.64252 * 17 7 6 29 29 H 1.09001 * 109.46847 * 304.64568 * 17 7 6 30 30 H 1.08000 * 119.97846 * 180.23448 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5786 1.2014 -0.0005 5 6 4.2739 0.0010 -0.0005 6 8 5.6331 0.0017 -0.0016 7 6 6.2814 1.2691 0.1210 8 1 5.5912 1.9893 0.5607 9 6 7.4933 1.1300 1.0059 10 1 7.7945 0.1552 1.3598 11 6 8.2176 2.2474 1.3637 12 7 9.3413 2.1157 2.0342 13 14 7.6028 3.9482 0.8960 14 1 8.1498 4.3244 -0.4324 15 1 6.1190 3.9390 0.8357 16 1 8.0508 4.9333 1.9129 17 6 6.7139 1.7569 -1.2632 18 17 5.2542 2.0538 -2.2789 19 6 3.5793 -1.2005 -0.0052 20 35 4.5227 -2.8393 -0.0124 21 6 2.1969 -1.1979 0.0007 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5138 25 1 1.6556 2.1327 0.0004 26 1 4.1169 2.1376 -0.0010 27 1 9.6236 1.2396 2.3403 28 1 7.2803 2.6826 -1.1617 29 1 7.3380 0.9991 -1.7368 30 1 1.6556 -2.1325 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225816583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:26 Heat of formation + Delta-G solvation = -28.790376 kcal Electronic energy + Delta-G solvation = -16843.068757 eV Core-core repulsion = 13903.531276 eV Total energy + Delta-G solvation = -2939.537481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.976 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.81655 -37.47827 -35.29856 -33.58721 -32.33207 -31.35372 -30.29848 -28.94526 -26.14685 -24.90550 -23.07169 -21.31782 -20.24081 -18.14475 -17.52160 -15.77379 -15.11788 -14.88008 -14.55755 -14.12627 -13.62345 -13.49358 -13.24044 -13.12864 -12.63357 -12.57452 -12.21259 -11.97197 -11.45703 -11.21808 -11.00610 -10.80931 -10.53515 -10.45279 -10.09942 -9.88065 -9.79228 -9.60586 -9.05652 -8.80258 -8.49652 -7.57950 -6.84359 -4.53350 1.41115 1.67278 2.07027 2.86652 3.08719 3.16585 3.28167 3.86906 3.92289 4.11340 4.87302 4.95580 5.07668 5.28289 5.37391 5.50100 5.61302 5.63734 5.75656 5.85556 5.90212 6.02335 6.08046 6.32761 6.47888 6.62633 6.72936 6.99765 7.31126 7.92396 8.09630 8.60835 9.17666 10.56291 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.006404 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.244865 B = 4370.899003 C = 5314.291928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.140 4.140 3 C -0.067 4.067 4 C -0.191 4.191 5 C 0.177 3.823 6 O -0.283 6.283 7 C 0.179 3.821 8 H 0.050 0.950 9 C -0.599 4.599 10 H 0.078 0.922 11 C 0.038 3.962 12 N -0.886 5.886 13 Si 1.032 2.968 14 H -0.274 1.274 15 H -0.272 1.272 16 H -0.274 1.274 17 C -0.049 4.049 18 Cl -0.225 7.225 19 C -0.133 4.133 20 Br -0.051 7.051 21 C -0.059 4.059 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.123 0.877 26 H 0.142 0.858 27 H 0.276 0.724 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.002 -4.260 -4.768 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.142 4.142 3 C -0.086 4.086 4 C -0.211 4.211 5 C 0.127 3.873 6 O -0.194 6.194 7 C 0.123 3.877 8 H 0.067 0.933 9 C -0.636 4.636 10 H 0.096 0.904 11 C -0.170 4.170 12 N -0.518 5.518 13 Si 0.859 3.141 14 H -0.201 1.201 15 H -0.197 1.197 16 H -0.200 1.200 17 C -0.112 4.112 18 Cl -0.199 7.199 19 C -0.213 4.213 20 Br 0.034 6.966 21 C -0.079 4.079 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.141 0.859 26 H 0.159 0.841 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.166 -3.409 -4.785 14.418 hybrid contribution -0.443 -1.008 -0.179 1.115 sum -13.609 -4.416 -4.964 15.144 Atomic orbital electron populations 1.20634 0.91056 1.02339 1.01819 1.19627 0.95915 0.92538 1.06086 1.20874 0.93369 0.97474 0.96853 1.21490 0.94992 0.97908 1.06687 1.18789 0.84941 0.92160 0.91364 1.86280 1.13477 1.34656 1.85000 1.21057 0.94288 0.81291 0.91032 0.93295 1.22013 1.11844 0.97570 1.32215 0.90404 1.25747 0.93428 1.03216 0.94602 1.70781 1.18652 1.28225 1.34118 0.84175 0.76619 0.75886 0.77421 1.20075 1.19733 1.19980 1.26208 0.87743 1.03664 0.93579 1.98668 1.48876 1.97246 1.75083 1.20939 0.93918 0.90025 1.16456 1.96603 1.76699 1.25334 1.97947 1.20657 0.90898 0.98220 0.98079 0.91754 0.91930 0.91841 0.85878 0.84054 0.91310 0.88778 0.88318 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.14 -1.92 5.88 -104.61 -0.62 -2.54 16 3 C -0.07 -1.00 9.69 -39.60 -0.38 -1.38 16 4 C -0.19 -3.43 7.26 -39.44 -0.29 -3.72 16 5 C 0.18 3.50 6.20 -39.20 -0.24 3.26 16 6 O -0.28 -6.33 9.01 -19.49 -0.18 -6.50 16 7 C 0.18 4.09 1.72 -27.88 -0.05 4.04 16 8 H 0.05 1.11 3.91 -51.93 -0.20 0.91 16 9 C -0.60 -15.85 9.24 -34.44 -0.32 -16.17 16 10 H 0.08 2.27 8.04 -52.49 -0.42 1.85 16 11 C 0.04 1.01 5.43 -17.82 -0.10 0.91 16 12 N -0.89 -25.25 13.70 55.43 0.76 -24.49 16 13 Si 1.03 22.73 25.37 -169.99 -4.31 18.41 16 14 H -0.27 -5.65 6.76 56.52 0.38 -5.26 16 15 H -0.27 -5.50 6.36 56.52 0.36 -5.14 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C -0.05 -1.01 5.94 37.16 0.22 -0.79 16 18 Cl -0.22 -4.15 25.80 -51.86 -1.34 -5.48 16 19 C -0.13 -2.37 6.24 -39.38 -0.25 -2.61 16 20 Br -0.05 -0.86 33.16 -68.01 -2.26 -3.12 16 21 C -0.06 -0.87 9.44 -39.58 -0.37 -1.24 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 24 H 0.06 0.56 8.08 -51.92 -0.42 0.14 16 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.14 2.62 4.89 -52.49 -0.26 2.36 16 27 H 0.28 7.87 8.72 -40.82 -0.36 7.51 16 28 H 0.09 1.92 4.45 -51.93 -0.23 1.69 16 29 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 282.89 15.07 4.26 4.26 Total: -1.00 -27.34 282.89 -7.95 -35.28 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -2.86 Total: 2.53 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.03 Total: -20.90 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.76 Total: -24.49 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.18 Total: -6.50 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.31 Total: 18.41 kcal Atomic # 17 Polarization: -4.15 SS G_CDS: -1.34 Total: -5.48 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.26 Total: -3.12 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.34 -7.95 -35.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225816583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.492 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds