Wall clock time and date at job start Tue Mar 31 2020 12:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48495 * 109.46964 * 274.99161 * 3 2 1 5 5 H 1.48497 * 109.47055 * 34.99313 * 3 2 1 6 6 H 1.48502 * 109.47072 * 154.99171 * 3 2 1 7 7 C 1.37870 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00104 * 185.60667 * 7 2 1 9 9 C 1.50705 * 119.99910 * 5.61455 * 7 2 1 10 10 H 1.08997 * 109.46822 * 305.05077 * 9 7 2 11 11 C 1.52998 * 109.47236 * 65.05789 * 9 7 2 12 12 Cl 1.80298 * 109.46912 * 185.51688 * 11 9 7 13 13 O 1.42901 * 109.46954 * 185.05846 * 9 7 2 14 14 C 1.36000 * 116.99973 * 147.84997 * 13 9 7 15 15 C 1.38024 * 119.99055 * 356.04447 * 14 13 9 16 16 C 1.40041 * 119.82509 * 180.02562 * 15 14 13 17 17 C 1.46864 * 120.09617 * 180.02562 * 16 15 14 18 18 O 1.21293 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99826 * 179.97438 * 17 16 15 20 20 Cl 1.80300 * 109.47039 * 179.97438 * 19 17 16 21 21 C 1.40012 * 119.80354 * 359.97438 * 16 15 14 22 22 C 1.37670 * 119.97648 * 359.97438 * 21 16 15 23 23 C 1.38917 * 120.17876 * 0.28030 * 22 21 16 24 24 O 1.35752 * 119.90082 * 179.70246 * 23 22 21 25 25 H 0.97005 * 119.99818 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46806 * 305.52271 * 11 9 7 27 27 H 1.08997 * 109.47189 * 65.52110 * 11 9 7 28 28 H 1.08001 * 120.08767 * 359.97438 * 15 14 13 29 29 H 1.09004 * 109.47256 * 299.99987 * 19 17 16 30 30 H 1.08996 * 109.47151 * 59.99844 * 19 17 16 31 31 H 1.07994 * 120.00577 * 179.97438 * 21 16 15 32 32 H 1.08007 * 119.91017 * 179.97438 * 22 21 16 33 33 H 0.96694 * 114.00394 * 90.00083 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0807 -1.1962 0.0919 9 6 1.2564 -2.4960 -0.1266 10 1 0.4949 -2.5549 0.6510 11 6 0.5885 -2.5684 -1.5012 12 17 -0.4374 -4.0482 -1.5936 13 8 2.1693 -3.5859 0.0174 14 6 1.6883 -4.7230 0.5878 15 6 0.3961 -4.7590 1.0715 16 6 -0.0954 -5.9315 1.6586 17 6 -1.4697 -5.9765 2.1747 18 8 -2.1805 -4.9971 2.0932 19 6 -1.9966 -7.2396 2.8055 20 17 -3.7000 -6.9807 3.3368 21 6 0.7267 -7.0610 1.7511 22 6 2.0140 -7.0165 1.2650 23 6 2.5025 -5.8513 0.6876 24 8 3.7747 -5.8117 0.2156 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0329 -1.6854 -1.6501 27 1 1.3544 -2.6084 -2.2756 28 1 -0.2340 -3.8849 0.9981 29 1 -1.9617 -8.0509 2.0784 30 1 -1.3827 -7.4983 3.6682 31 1 0.3511 -7.9668 2.2036 32 1 2.6474 -7.8883 1.3373 33 1 3.8585 -6.0727 -0.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227082381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:15 Heat of formation + Delta-G solvation = -110.161392 kcal Electronic energy + Delta-G solvation = -22157.216979 eV Core-core repulsion = 18428.578671 eV Total energy + Delta-G solvation = -3728.638307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.27815 -38.99467 -37.51076 -36.12578 -35.97085 -34.97674 -33.46658 -30.98898 -30.24854 -29.66055 -27.95339 -25.36477 -23.57926 -22.95815 -20.73348 -19.91495 -18.52377 -17.22896 -16.93510 -16.01285 -15.90399 -15.53043 -15.22140 -14.85547 -14.60862 -14.48554 -13.86073 -13.60726 -13.32613 -13.09655 -13.00414 -12.59543 -12.22338 -11.89365 -11.76382 -11.47111 -11.16330 -11.08768 -10.96899 -10.82190 -10.62133 -10.52661 -10.17929 -9.81850 -9.72044 -9.51428 -9.33886 -8.72841 -8.56933 -7.59979 -6.46376 -4.54395 0.72260 1.63037 1.94647 2.42687 3.09573 3.19321 3.23148 3.27040 3.77121 3.85938 3.92674 4.25991 4.43536 4.79404 4.81388 4.89147 4.95070 5.19633 5.24709 5.49055 5.76735 5.96428 6.06624 6.12683 6.29589 6.36173 6.46571 6.66071 6.83623 7.02155 7.48993 7.50002 7.67708 7.79838 8.21334 8.61897 9.13316 10.61516 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.004622 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.564512 B = 6056.543392 C = 7141.785045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.078 0.922 9 C 0.200 3.800 10 H 0.057 0.943 11 C -0.031 4.031 12 Cl -0.237 7.237 13 O -0.297 6.297 14 C 0.124 3.876 15 C -0.115 4.115 16 C -0.146 4.146 17 C 0.382 3.618 18 O -0.416 6.416 19 C -0.084 4.084 20 Cl -0.151 7.151 21 C -0.118 4.118 22 C -0.125 4.125 23 C 0.089 3.911 24 O -0.485 6.485 25 H 0.273 0.727 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -14.854 1.771 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.096 0.904 9 C 0.146 3.854 10 H 0.075 0.925 11 C -0.094 4.094 12 Cl -0.211 7.211 13 O -0.210 6.210 14 C 0.076 3.924 15 C -0.134 4.134 16 C -0.147 4.147 17 C 0.257 3.743 18 O -0.288 6.288 19 C -0.147 4.147 20 Cl -0.124 7.124 21 C -0.136 4.136 22 C -0.144 4.144 23 C 0.044 3.956 24 O -0.294 6.294 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.097 0.903 28 H 0.174 0.826 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.315 -14.021 2.248 14.203 hybrid contribution 0.005 0.612 -0.556 0.827 sum -0.310 -13.409 1.693 13.519 Atomic orbital electron populations 1.69924 1.06004 1.28275 1.47567 1.25008 0.95132 0.99848 0.93877 0.86193 0.79854 0.81485 0.78414 1.20150 1.20704 1.19280 1.20938 0.94829 0.87797 1.52763 0.90424 1.20630 0.89379 0.82986 0.92438 0.92527 1.25707 0.94707 0.86901 1.02086 1.98652 1.75066 1.48559 1.98817 1.86251 1.40939 1.20164 1.73599 1.19457 0.91352 0.88533 0.93088 1.21754 0.95460 0.99271 0.96913 1.19955 0.94844 0.95369 1.04580 1.22226 0.87143 0.88351 0.76627 1.90659 1.57746 1.35877 1.44505 1.24806 0.85403 1.00628 1.03870 1.98739 1.24220 1.97676 1.91784 1.20929 0.93660 0.97324 1.01704 1.20995 0.95655 0.96843 1.00895 1.18061 0.84563 0.91122 1.01891 1.84801 1.22687 1.90571 1.31328 0.91732 0.86154 0.90330 0.82604 0.85665 0.85611 0.85442 0.84784 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.29 11.95 55.43 0.66 -22.63 16 2 C 0.07 1.68 5.22 -17.82 -0.09 1.59 16 3 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.53 -13.62 8.82 -34.44 -0.30 -13.92 16 8 H 0.08 2.03 7.82 -52.48 -0.41 1.62 16 9 C 0.20 4.80 2.07 -27.88 -0.06 4.75 16 10 H 0.06 1.48 5.40 -51.93 -0.28 1.20 16 11 C -0.03 -0.69 6.22 37.16 0.23 -0.46 16 12 Cl -0.24 -4.76 25.51 -51.86 -1.32 -6.08 16 13 O -0.30 -6.66 9.52 -34.41 -0.33 -6.98 16 14 C 0.12 2.41 5.98 -39.19 -0.23 2.17 16 15 C -0.12 -2.20 6.53 -38.98 -0.25 -2.45 16 16 C -0.15 -2.24 5.87 -105.07 -0.62 -2.86 16 17 C 0.38 5.64 7.15 -30.82 -0.22 5.42 16 18 O -0.42 -7.91 15.99 5.55 0.09 -7.82 16 19 C -0.08 -0.83 5.74 36.00 0.21 -0.63 16 20 Cl -0.15 -1.89 28.37 -51.86 -1.47 -3.36 16 21 C -0.12 -1.40 9.46 -39.12 -0.37 -1.77 16 22 C -0.13 -1.59 9.96 -39.54 -0.39 -1.99 16 23 C 0.09 1.45 6.73 -38.86 -0.26 1.19 16 24 O -0.48 -7.36 13.26 -33.63 -0.45 -7.81 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.12 2.87 6.60 -51.93 -0.34 2.52 16 27 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.16 3.44 4.65 -52.49 -0.24 3.20 16 29 H 0.13 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.13 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.13 0.97 7.03 -52.49 -0.37 0.60 16 32 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.39 4.08 9.06 45.56 0.41 4.49 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -29.95 316.43 -7.49 -37.44 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -2.05 Total: 6.54 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.37 Total: -8.96 kcal Atomic # 7 Polarization: -23.29 SS G_CDS: 0.66 Total: -22.63 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.68 Total: -22.61 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: -6.65 SS G_CDS: -2.79 Total: -9.44 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.95 -7.49 -37.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227082381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.720 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds