Wall clock time and date at job start Tue Mar 31 2020 12:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48495 * 109.46964 * 274.99161 * 3 2 1 5 5 H 1.48497 * 109.47055 * 34.99313 * 3 2 1 6 6 H 1.48502 * 109.47072 * 154.99171 * 3 2 1 7 7 C 1.37870 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00104 * 185.60667 * 7 2 1 9 9 C 1.50705 * 119.99910 * 5.61455 * 7 2 1 10 10 H 1.08997 * 109.46822 * 305.05077 * 9 7 2 11 11 C 1.52998 * 109.47236 * 65.05789 * 9 7 2 12 12 Cl 1.80298 * 109.46912 * 185.51688 * 11 9 7 13 13 O 1.42901 * 109.46954 * 185.05846 * 9 7 2 14 14 C 1.36000 * 116.99973 * 147.84997 * 13 9 7 15 15 C 1.38024 * 119.99055 * 356.04447 * 14 13 9 16 16 C 1.40041 * 119.82509 * 180.02562 * 15 14 13 17 17 C 1.46864 * 120.09617 * 180.02562 * 16 15 14 18 18 O 1.21293 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99826 * 179.97438 * 17 16 15 20 20 Cl 1.80300 * 109.47039 * 179.97438 * 19 17 16 21 21 C 1.40012 * 119.80354 * 359.97438 * 16 15 14 22 22 C 1.37670 * 119.97648 * 359.97438 * 21 16 15 23 23 C 1.38917 * 120.17876 * 0.28030 * 22 21 16 24 24 O 1.35752 * 119.90082 * 179.70246 * 23 22 21 25 25 H 0.97005 * 119.99818 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46806 * 305.52271 * 11 9 7 27 27 H 1.08997 * 109.47189 * 65.52110 * 11 9 7 28 28 H 1.08001 * 120.08767 * 359.97438 * 15 14 13 29 29 H 1.09004 * 109.47256 * 299.99987 * 19 17 16 30 30 H 1.08996 * 109.47151 * 59.99844 * 19 17 16 31 31 H 1.07994 * 120.00577 * 179.97438 * 21 16 15 32 32 H 1.08007 * 119.91017 * 179.97438 * 22 21 16 33 33 H 0.96694 * 114.00394 * 90.00083 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0807 -1.1962 0.0919 9 6 1.2564 -2.4960 -0.1266 10 1 0.4949 -2.5549 0.6510 11 6 0.5885 -2.5684 -1.5012 12 17 -0.4374 -4.0482 -1.5936 13 8 2.1693 -3.5859 0.0174 14 6 1.6883 -4.7230 0.5878 15 6 0.3961 -4.7590 1.0715 16 6 -0.0954 -5.9315 1.6586 17 6 -1.4697 -5.9765 2.1747 18 8 -2.1805 -4.9971 2.0932 19 6 -1.9966 -7.2396 2.8055 20 17 -3.7000 -6.9807 3.3368 21 6 0.7267 -7.0610 1.7511 22 6 2.0140 -7.0165 1.2650 23 6 2.5025 -5.8513 0.6876 24 8 3.7747 -5.8117 0.2156 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0329 -1.6854 -1.6501 27 1 1.3544 -2.6084 -2.2756 28 1 -0.2340 -3.8849 0.9981 29 1 -1.9617 -8.0509 2.0784 30 1 -1.3827 -7.4983 3.6682 31 1 0.3511 -7.9668 2.2036 32 1 2.6474 -7.8883 1.3373 33 1 3.8585 -6.0727 -0.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227082381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:15 Heat of formation + Delta-G solvation = -129.932779 kcal Electronic energy + Delta-G solvation = -22158.074330 eV Core-core repulsion = 18428.578671 eV Total energy + Delta-G solvation = -3729.495659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55625 -40.27740 -38.93051 -37.27966 -36.91495 -36.67353 -35.36188 -32.23817 -31.57549 -31.18829 -29.09303 -27.31086 -24.87414 -24.28660 -22.23988 -21.15531 -19.82023 -18.72812 -18.48486 -17.45679 -17.22576 -16.65852 -16.45567 -16.35469 -16.02333 -15.91566 -15.29761 -15.06995 -14.50270 -14.28578 -14.14476 -14.04744 -13.94418 -13.20803 -13.08476 -13.03833 -12.98012 -12.79863 -12.43114 -12.14845 -11.94798 -11.61999 -11.48663 -11.47103 -11.20822 -11.11790 -10.82945 -10.63248 -9.77951 -8.98273 -8.42062 -6.58556 -0.46192 0.45557 1.12923 1.28479 1.34772 1.39292 1.49105 1.52924 2.22332 2.60095 2.69266 2.77185 2.92306 3.28277 3.83416 3.99756 4.14668 4.16644 4.21551 4.24090 4.28603 4.31693 4.63297 4.78904 4.83259 5.06026 5.19400 5.26519 5.33318 5.49149 5.73086 5.77676 6.36823 6.41787 6.65894 6.93040 7.14715 8.65653 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.004622 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.564512 B = 6056.543392 C = 7141.785045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.210 3.790 10 H 0.026 0.974 11 C -0.020 4.020 12 Cl -0.217 7.217 13 O -0.318 6.318 14 C 0.078 3.922 15 C -0.139 4.139 16 C -0.161 4.161 17 C 0.381 3.619 18 O -0.474 6.474 19 C -0.074 4.074 20 Cl -0.176 7.176 21 C -0.081 4.081 22 C -0.113 4.113 23 C 0.092 3.908 24 O -0.496 6.496 25 H 0.275 0.725 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.190 0.810 32 H 0.181 0.819 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 -18.228 2.420 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.086 0.914 9 C 0.155 3.845 10 H 0.043 0.957 11 C -0.083 4.083 12 Cl -0.191 7.191 13 O -0.233 6.233 14 C 0.032 3.968 15 C -0.158 4.158 16 C -0.162 4.162 17 C 0.259 3.741 18 O -0.350 6.350 19 C -0.136 4.136 20 Cl -0.149 7.149 21 C -0.099 4.099 22 C -0.131 4.131 23 C 0.046 3.954 24 O -0.309 6.309 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.185 0.815 30 H 0.185 0.815 31 H 0.207 0.793 32 H 0.198 0.802 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 0.772 -17.442 2.885 17.695 hybrid contribution -0.284 1.438 -0.717 1.632 sum 0.488 -16.003 2.167 16.157 Atomic orbital electron populations 1.70034 1.07351 1.29087 1.48168 1.25802 0.95822 1.02874 0.93113 0.85237 0.78469 0.77367 0.78879 1.18937 1.20338 1.19107 1.21197 0.94560 0.89422 1.53528 0.91445 1.20232 0.88756 0.83344 0.92186 0.95691 1.25299 0.94628 0.86959 1.01439 1.98639 1.74466 1.47204 1.98817 1.86146 1.40822 1.21036 1.75247 1.19869 0.92628 0.88694 0.95649 1.21486 0.95178 0.99660 0.99465 1.20248 0.96019 0.95348 1.04611 1.22920 0.86470 0.89370 0.75323 1.90657 1.58974 1.38390 1.46985 1.25063 0.84062 0.98354 1.06125 1.98747 1.26427 1.97770 1.91973 1.21576 0.92419 0.97572 0.98354 1.21509 0.96348 0.96561 0.98723 1.18429 0.84324 0.91076 1.01592 1.84735 1.22208 1.90876 1.33044 0.91571 0.88303 0.89508 0.86976 0.81531 0.81476 0.79324 0.80219 0.73631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.44 11.95 21.45 0.26 -50.19 16 2 C 0.03 1.36 5.22 84.65 0.44 1.80 16 3 Si 0.98 41.79 29.54 68.60 2.03 43.82 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.55 -30.05 8.82 25.60 0.23 -29.82 16 8 H 0.07 3.71 7.82 -2.91 -0.02 3.69 16 9 C 0.21 10.79 2.07 29.85 0.06 10.85 16 10 H 0.03 1.45 5.40 -2.39 -0.01 1.44 16 11 C -0.02 -0.95 6.22 71.98 0.45 -0.50 16 12 Cl -0.22 -9.09 25.51 -2.72 -0.07 -9.16 16 13 O -0.32 -15.07 9.52 -79.53 -0.76 -15.82 16 14 C 0.08 3.11 5.98 22.52 0.13 3.24 16 15 C -0.14 -5.49 6.53 22.66 0.15 -5.35 16 16 C -0.16 -4.66 5.87 -20.15 -0.12 -4.78 16 17 C 0.38 10.72 7.15 27.94 0.20 10.92 16 18 O -0.47 -18.67 15.99 -3.07 -0.05 -18.72 16 19 C -0.07 -1.16 5.74 71.24 0.41 -0.75 16 20 Cl -0.18 -4.07 28.37 -2.72 -0.08 -4.14 16 21 C -0.08 -1.49 9.46 22.57 0.21 -1.28 16 22 C -0.11 -2.31 9.96 22.30 0.22 -2.09 16 23 C 0.09 2.80 6.73 22.73 0.15 2.95 16 24 O -0.50 -14.18 13.26 -76.75 -1.02 -15.20 16 25 H 0.28 14.35 8.31 -92.70 -0.77 13.58 16 26 H 0.10 5.03 6.60 -2.39 -0.02 5.01 16 27 H 0.09 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.11 5.43 4.65 -2.91 -0.01 5.42 16 29 H 0.17 1.30 8.08 -2.38 -0.02 1.28 16 30 H 0.17 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.19 1.20 7.03 -2.91 -0.02 1.18 16 32 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.41 7.81 9.06 -74.06 -0.67 7.13 16 Total: -1.00 -73.21 316.43 3.36 -69.84 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.51 Total: 14.38 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 2.54 Total: -14.81 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.26 Total: -50.19 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -1.82 Total: -49.75 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 17 Polarization: -13.16 SS G_CDS: -0.15 Total: -13.30 kcal Total: -73.21 3.36 -69.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227082381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.088 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds