Wall clock time and date at job start Tue Mar 31 2020 11:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 119.96317 * 2 1 4 4 C 1.38246 * 120.11740 * 180.27841 * 3 2 1 5 5 C 1.38230 * 120.04626 * 0.02562 * 4 3 2 6 6 Br 1.89102 * 120.03608 * 180.02562 * 5 4 3 7 7 C 1.38792 * 119.92913 * 359.97438 * 5 4 3 8 8 O 1.35916 * 120.05939 * 179.97438 * 7 5 4 9 9 C 1.42902 * 116.99969 * 176.05409 * 8 7 5 10 10 H 1.08994 * 109.47105 * 27.75615 * 9 8 7 11 11 C 1.50702 * 109.46831 * 147.75730 * 9 8 7 12 12 H 1.07998 * 120.00351 * 5.04169 * 11 9 8 13 13 C 1.37880 * 119.99700 * 185.04631 * 11 9 8 14 14 N 1.31511 * 120.00147 * 5.61661 * 13 11 9 15 15 Si 1.86797 * 119.99761 * 185.61535 * 13 11 9 16 16 H 1.48502 * 109.47512 * 94.99596 * 15 13 11 17 17 H 1.48505 * 109.47142 * 214.99609 * 15 13 11 18 18 H 1.48503 * 109.47429 * 334.99625 * 15 13 11 19 19 C 1.53004 * 109.47261 * 267.75301 * 9 8 7 20 20 Cl 1.80300 * 109.46776 * 65.49849 * 19 9 8 21 21 C 1.38145 * 119.96821 * 180.28284 * 2 1 3 22 22 H 1.09003 * 109.46631 * 269.71668 * 1 2 3 23 23 H 1.08994 * 109.47131 * 29.72309 * 1 2 3 24 24 H 1.09001 * 109.46820 * 149.72672 * 1 2 3 25 25 H 1.08000 * 119.93947 * 0.25673 * 3 2 1 26 26 H 1.08002 * 119.97252 * 179.97438 * 4 3 2 27 27 H 0.97000 * 120.00368 * 180.02562 * 14 13 11 28 28 H 1.08996 * 109.46906 * 185.49366 * 19 9 8 29 29 H 1.08995 * 109.47306 * 305.50094 * 19 9 8 30 30 H 1.08004 * 120.02006 * 359.73515 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5801 1.2018 -0.0058 5 6 4.2754 0.0071 -0.0122 6 35 6.1664 0.0125 -0.0194 7 6 3.5842 -1.1964 -0.0122 8 8 4.2652 -2.3727 -0.0190 9 6 3.4914 -3.5708 0.0691 10 1 2.5015 -3.3958 -0.3522 11 6 4.1779 -4.6698 -0.7005 12 1 5.1502 -4.4969 -1.1376 13 6 3.5645 -5.8959 -0.8466 14 7 2.3362 -6.0728 -0.4112 15 14 4.4782 -7.3059 -1.6631 16 1 5.1205 -8.1483 -0.6223 17 1 3.5210 -8.1292 -2.4450 18 1 5.5195 -6.7612 -2.5710 19 6 3.3556 -3.9837 1.5361 20 17 2.3934 -2.7433 2.4228 21 6 2.1971 -1.1967 -0.0059 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 0.8924 -0.5095 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6561 2.1324 0.0042 26 1 4.1172 2.1388 -0.0062 27 1 1.9048 -6.9356 -0.5136 28 1 2.8502 -4.9474 1.5970 29 1 4.3460 -4.0638 1.9842 30 1 1.6569 -2.1320 -0.0062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228051651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:47 Heat of formation + Delta-G solvation = -44.071554 kcal Electronic energy + Delta-G solvation = -16887.878967 eV Core-core repulsion = 13947.678845 eV Total energy + Delta-G solvation = -2940.200122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.976 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.10365 -38.68237 -36.63866 -35.38098 -34.08681 -31.70194 -31.22645 -30.53319 -27.25882 -27.23172 -24.55168 -22.30184 -22.14019 -18.84628 -18.61452 -17.12007 -16.75927 -16.37281 -16.19879 -15.46474 -15.08106 -14.58010 -14.42686 -14.03080 -13.97689 -13.73224 -13.31504 -13.04956 -12.98450 -12.82833 -12.44177 -12.32217 -12.21909 -11.87017 -11.57798 -11.39202 -11.19443 -11.03628 -10.99499 -10.58763 -9.51145 -8.90296 -8.39100 -6.52921 0.22196 0.53873 0.84555 1.37343 1.42294 1.52107 1.56145 2.25585 2.64194 2.74991 2.95708 3.89389 3.94711 4.16512 4.27387 4.36113 4.38343 4.64068 4.70505 4.79860 4.85168 4.90598 5.10123 5.19169 5.30423 5.38046 5.53853 5.65946 5.82363 5.91895 6.45028 6.77741 7.18875 8.68766 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.006463 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.520714 B = 4331.514683 C = 5510.972642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.040 4.040 3 C -0.159 4.159 4 C -0.054 4.054 5 C -0.160 4.160 6 Br -0.055 7.055 7 C 0.153 3.847 8 O -0.314 6.314 9 C 0.211 3.789 10 H 0.038 0.962 11 C -0.547 4.547 12 H 0.064 0.936 13 C 0.031 3.969 14 N -0.906 5.906 15 Si 0.971 3.029 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.271 1.271 19 C -0.021 4.021 20 Cl -0.216 7.216 21 C -0.205 4.205 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.164 0.836 26 H 0.159 0.841 27 H 0.275 0.725 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 12.771 1.428 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.041 4.041 3 C -0.177 4.177 4 C -0.074 4.074 5 C -0.240 4.240 6 Br 0.030 6.970 7 C 0.105 3.895 8 O -0.227 6.227 9 C 0.156 3.844 10 H 0.055 0.945 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.172 4.172 14 N -0.542 5.542 15 Si 0.795 3.205 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.195 1.195 19 C -0.084 4.084 20 Cl -0.190 7.190 21 C -0.225 4.225 22 H 0.098 0.902 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.181 0.819 26 H 0.176 0.824 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.473 12.664 1.498 12.761 hybrid contribution -0.171 -1.246 -0.184 1.271 sum 0.301 11.419 1.314 11.498 Atomic orbital electron populations 1.20865 0.88980 1.03802 1.03219 1.20162 0.97674 0.91937 0.94332 1.21198 0.93063 0.98390 1.05094 1.21163 0.94712 0.95628 0.95884 1.21207 0.90445 0.93999 1.18310 1.96545 1.03195 1.99189 1.98064 1.19037 0.91150 0.86355 0.92985 1.86183 1.37350 1.12908 1.86296 1.20282 0.92744 0.80157 0.91221 0.94488 1.21169 1.05487 0.96635 1.35176 0.91808 1.25671 0.95371 1.00692 0.95423 1.69979 1.12358 1.25733 1.46164 0.85326 0.78388 0.78140 0.78638 1.19325 1.20080 1.19503 1.25296 0.96102 0.93107 0.93906 1.98639 1.77373 1.62646 1.80321 1.21320 0.92531 0.99987 1.08618 0.90178 0.88625 0.92096 0.81860 0.82389 0.91533 0.87815 0.90354 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 10.01 71.24 0.71 -1.86 16 2 C -0.04 -1.21 5.88 -19.87 -0.12 -1.33 16 3 C -0.16 -4.03 9.70 22.28 0.22 -3.81 16 4 C -0.05 -1.52 9.78 22.27 0.22 -1.30 16 5 C -0.16 -5.70 6.24 22.40 0.14 -5.56 16 6 Br -0.05 -1.84 33.16 -20.37 -0.68 -2.52 16 7 C 0.15 6.33 5.95 22.52 0.13 6.47 16 8 O -0.31 -14.87 9.07 -92.60 -0.84 -15.71 16 9 C 0.21 10.44 2.07 29.85 0.06 10.50 16 10 H 0.04 1.97 5.40 -2.39 -0.01 1.96 16 11 C -0.55 -29.10 8.82 25.60 0.23 -28.88 16 12 H 0.06 3.48 7.82 -2.91 -0.02 3.45 16 13 C 0.03 1.56 5.22 84.66 0.44 2.00 16 14 N -0.91 -47.37 11.95 21.45 0.26 -47.11 16 15 Si 0.97 40.79 29.54 68.60 2.03 42.81 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 C -0.02 -0.96 6.22 71.98 0.45 -0.51 16 20 Cl -0.22 -8.74 25.53 -2.72 -0.07 -8.81 16 21 C -0.21 -7.85 6.65 22.36 0.15 -7.70 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 24 H 0.06 1.50 8.08 -2.39 -0.02 1.48 16 25 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 26 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 28 H 0.10 5.04 6.60 -2.39 -0.02 5.02 16 29 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.12 5.18 5.09 -2.91 -0.01 5.17 16 Total: -1.00 -56.38 288.89 4.49 -51.89 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.16 Total: 11.43 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 2.63 Total: -31.98 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.26 Total: -47.11 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.84 Total: -15.71 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 17 Polarization: -8.74 SS G_CDS: -0.07 Total: -8.81 kcal Atomic # 35 Polarization: -1.84 SS G_CDS: -0.68 Total: -2.52 kcal Total: -56.38 4.49 -51.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228051651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.819 kcal (2) G-P(sol) polarization free energy of solvation -56.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds