Wall clock time and date at job start Tue Mar 31 2020 11:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00184 * 2 1 4 4 C 1.50705 * 109.46994 * 269.99731 * 3 2 1 5 5 H 1.07998 * 120.00121 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99944 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 120.00460 * 0.02562 * 6 4 3 9 9 H 1.48491 * 109.47419 * 89.99441 * 8 6 4 10 10 H 1.48497 * 109.47134 * 209.99996 * 8 6 4 11 11 H 1.48503 * 109.46709 * 329.99763 * 8 6 4 12 12 C 1.39678 * 120.00138 * 179.97438 * 2 1 3 13 13 C 1.38915 * 120.06984 * 0.02562 * 12 2 1 14 14 C 1.38104 * 119.92359 * 179.97438 * 13 12 2 15 15 C 1.38288 * 120.07208 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.92272 * 180.02562 * 15 14 13 17 17 N 1.46904 * 109.47158 * 269.99826 * 16 15 14 18 18 C 1.46899 * 111.00193 * 293.95943 * 17 16 15 19 19 C 1.46898 * 111.00162 * 170.00150 * 17 16 15 20 20 H 1.08994 * 110.28901 * 57.87092 * 19 17 16 21 21 C 1.54259 * 110.32526 * 180.02562 * 19 17 16 22 22 C 1.54380 * 105.06299 * 118.89677 * 21 19 17 23 23 N 1.48562 * 104.59395 * 23.84858 * 22 21 19 24 24 C 1.46895 * 110.99738 * 200.96097 * 23 22 21 25 25 C 1.48564 * 104.22431 * 320.51958 * 23 22 21 26 26 C 1.38290 * 120.15288 * 0.02562 * 15 14 13 27 27 C 1.38100 * 120.07105 * 359.97438 * 26 15 14 28 28 H 1.09001 * 109.47288 * 270.00009 * 1 2 3 29 29 H 1.08994 * 109.46748 * 30.00133 * 1 2 3 30 30 H 1.09004 * 109.46919 * 150.00058 * 1 2 3 31 31 H 1.08995 * 109.47144 * 29.99687 * 3 2 1 32 32 H 1.09000 * 109.47505 * 149.99538 * 3 2 1 33 33 H 0.97001 * 120.00260 * 180.02562 * 7 6 4 34 34 H 1.07998 * 120.03739 * 359.69591 * 13 12 2 35 35 H 1.08001 * 119.96576 * 179.97438 * 14 13 12 36 36 H 1.08996 * 109.47616 * 29.99912 * 16 15 14 37 37 H 1.09001 * 109.46889 * 150.00715 * 16 15 14 38 38 H 1.08995 * 109.47351 * 60.00104 * 18 17 16 39 39 H 1.09003 * 109.47008 * 180.02562 * 18 17 16 40 40 H 1.08997 * 109.46949 * 299.99458 * 18 17 16 41 41 H 1.09008 * 110.31850 * 237.78941 * 21 19 17 42 42 H 1.08993 * 110.32406 * 359.97438 * 21 19 17 43 43 H 1.08997 * 110.41193 * 142.62625 * 22 21 19 44 44 H 1.08998 * 110.40972 * 265.07184 * 22 21 19 45 45 H 1.08994 * 109.47582 * 59.87749 * 24 23 22 46 46 H 1.09000 * 109.46955 * 179.87576 * 24 23 22 47 47 H 1.09002 * 109.47557 * 299.87343 * 24 23 22 48 48 H 1.08997 * 110.40736 * 280.70117 * 25 23 22 49 49 H 1.08994 * 110.41008 * 158.26253 * 25 23 22 50 50 H 1.07997 * 119.96313 * 180.02562 * 26 15 14 51 51 H 1.08007 * 120.03349 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.3449 3.2577 -2.9127 8 14 3.7331 3.9292 -0.2530 9 1 5.1065 3.5081 0.1230 10 1 3.7479 5.3559 -0.6646 11 1 2.8271 3.7593 0.9113 12 6 2.1634 -1.2096 0.0005 13 6 1.4703 -2.4135 0.0005 14 6 2.1639 -3.6078 0.0005 15 6 3.5468 -3.6059 0.0000 16 6 4.3003 -4.9111 -0.0006 17 7 4.5457 -5.3355 1.3843 18 6 5.4566 -4.4063 2.0661 19 6 5.0639 -6.7093 1.4299 20 1 5.9828 -6.7861 0.8488 21 6 5.3152 -7.1388 2.8900 22 6 4.3882 -8.3524 3.1164 23 7 4.1523 -8.9021 1.7566 24 6 2.9347 -9.7232 1.7247 25 6 4.0060 -7.6993 0.8969 26 6 4.2399 -2.4092 0.0000 27 6 3.5525 -1.2115 0.0000 28 1 -0.3634 0.0000 1.0277 29 1 -0.3632 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.8218 4.0836 -3.0900 34 1 0.3904 -2.4156 0.0051 35 1 1.6258 -4.5441 0.0010 36 1 3.7111 -5.6706 -0.5143 37 1 5.2526 -4.7806 -0.5146 38 1 5.0160 -3.4094 2.0790 39 1 5.6215 -4.7443 3.0892 40 1 6.4085 -4.3761 1.5360 41 1 6.3575 -7.4282 3.0254 42 1 5.0546 -6.3302 3.5728 43 1 4.8796 -9.0939 3.7462 44 1 3.4478 -8.0336 3.5660 45 1 2.0776 -9.1136 2.0106 46 1 2.7845 -10.1113 0.7173 47 1 3.0384 -10.5542 2.4224 48 1 3.0057 -7.2784 0.9991 49 1 4.2096 -7.9492 -0.1443 50 1 5.3198 -2.4114 -0.0008 51 1 4.0944 -0.2772 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231817342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:42 Heat of formation + Delta-G solvation = 38.596862 kcal Electronic energy + Delta-G solvation = -26683.070513 eV Core-core repulsion = 23195.950324 eV Total energy + Delta-G solvation = -3487.120189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.79954 -40.08573 -37.96361 -36.55582 -34.71855 -32.67964 -32.00152 -31.09559 -30.06550 -29.87985 -27.95312 -26.43082 -26.18690 -24.69915 -23.22529 -22.90989 -22.00568 -20.96749 -20.72788 -19.08686 -18.16511 -17.50059 -17.00782 -16.84912 -16.28535 -16.05340 -15.82293 -15.31896 -15.17276 -15.13631 -14.99724 -14.75473 -14.36669 -14.35890 -14.23287 -13.91390 -13.72247 -13.36399 -13.22847 -13.13557 -12.81912 -12.70443 -12.59681 -12.46050 -12.41762 -12.35809 -12.17154 -12.03204 -11.83244 -11.77286 -11.71977 -11.69744 -11.42978 -10.83197 -10.40605 -9.66918 -9.47669 -9.23022 -8.34205 -7.91082 -6.39472 0.69442 0.82069 1.33603 1.34241 1.44995 2.29630 2.53911 2.77983 2.99638 3.15922 3.43043 3.64627 3.76586 4.00806 4.08162 4.17527 4.22262 4.33548 4.36515 4.42496 4.47881 4.50791 4.58554 4.60420 4.61651 4.68095 4.72512 4.75352 4.77556 4.80488 4.82846 4.89771 4.93603 5.00007 5.01356 5.04325 5.05530 5.07768 5.15713 5.22185 5.28997 5.44893 5.59023 5.64474 5.77896 5.89210 6.02187 6.08621 6.14948 6.20628 6.28791 6.59266 6.69349 6.86781 7.26027 8.83214 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.023385 B = 0.002565 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.049464 B =10912.562583 C =11425.052225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.535 4.535 5 H 0.024 0.976 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.243 1.243 12 C 0.212 3.788 13 C -0.216 4.216 14 C -0.050 4.050 15 C -0.151 4.151 16 C 0.112 3.888 17 N -0.534 5.534 18 C 0.021 3.979 19 C 0.078 3.922 20 H 0.047 0.953 21 C -0.118 4.118 22 C 0.036 3.964 23 N -0.528 5.528 24 C 0.014 3.986 25 C 0.042 3.958 26 C -0.066 4.066 27 C -0.216 4.216 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.268 0.732 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.028 0.972 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.052 0.948 49 H 0.080 0.920 50 H 0.121 0.879 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -23.308 13.437 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.574 4.574 5 H 0.043 0.957 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.769 3.231 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.167 1.167 12 C 0.108 3.892 13 C -0.239 4.239 14 C -0.069 4.069 15 C -0.154 4.154 16 C -0.015 4.015 17 N -0.259 5.259 18 C -0.127 4.127 19 C -0.030 4.030 20 H 0.065 0.935 21 C -0.156 4.156 22 C -0.092 4.092 23 N -0.253 5.253 24 C -0.135 4.135 25 C -0.086 4.086 26 C -0.085 4.085 27 C -0.238 4.238 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.139 0.861 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.947 -23.343 13.409 26.937 hybrid contribution 0.386 1.708 -0.451 1.808 sum 1.334 -21.636 12.958 25.255 Atomic orbital electron populations 1.21629 0.79179 1.02495 1.01271 1.46691 1.05611 1.03306 1.78098 1.19330 0.92569 0.82429 0.94744 1.21654 1.36414 1.06649 0.92640 0.95725 1.25873 0.95539 0.98789 0.98471 1.70065 1.42732 1.24426 1.21382 0.85736 0.79856 0.77816 0.79725 1.19023 1.20557 1.16684 1.18190 0.91657 0.86429 0.92948 1.20801 1.00052 0.90795 1.12262 1.20826 0.93423 0.97027 0.95632 1.19447 0.93841 0.93893 1.08227 1.20823 0.98021 0.93662 0.88952 1.62168 1.46499 1.01570 1.15639 1.22460 0.93908 0.96885 0.99444 1.22368 0.95882 0.87607 0.97169 0.93455 1.22453 1.00308 0.97547 0.95293 1.23105 0.98716 0.96382 0.90975 1.65389 1.35461 1.17069 1.07342 1.22532 0.89945 0.97808 1.03203 1.23126 0.98174 0.89475 0.97827 1.20804 0.99188 0.91328 0.97174 1.20764 0.93081 0.98630 1.11344 0.92082 0.92572 0.90805 0.94698 0.95326 0.92320 0.85074 0.84488 0.89430 0.94474 0.92093 0.90130 0.95540 0.90283 0.90058 0.89262 0.93857 0.95318 0.90852 0.90386 0.93009 0.90144 0.86145 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.26 10.19 127.77 1.30 4.56 16 2 N -0.63 -26.42 2.99 -726.56 -2.17 -28.60 16 3 C 0.23 11.02 3.98 85.63 0.34 11.36 16 4 C -0.53 -30.82 9.94 25.60 0.25 -30.56 16 5 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 6 C 0.01 0.65 5.47 84.65 0.46 1.11 16 7 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 8 Si 0.95 42.99 27.47 68.60 1.88 44.88 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 12 C 0.21 8.42 6.55 38.21 0.25 8.67 16 13 C -0.22 -7.09 9.20 22.40 0.21 -6.89 16 14 C -0.05 -1.42 9.69 22.25 0.22 -1.21 16 15 C -0.15 -4.31 4.89 -19.84 -0.10 -4.41 16 16 C 0.11 2.53 5.00 85.56 0.43 2.95 16 17 N -0.53 -11.04 4.55 -896.34 -4.08 -15.12 16 18 C 0.02 0.43 8.83 127.69 1.13 1.55 16 19 C 0.08 1.39 2.79 45.81 0.13 1.51 16 20 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 21 C -0.12 -1.78 6.09 31.49 0.19 -1.59 16 22 C 0.04 0.53 6.49 86.45 0.56 1.09 16 23 N -0.53 -8.64 5.66 -907.63 -5.14 -13.78 16 24 C 0.01 0.18 9.53 127.69 1.22 1.40 16 25 C 0.04 0.72 4.85 86.45 0.42 1.14 16 26 C -0.07 -2.16 7.95 22.25 0.18 -1.99 16 27 C -0.22 -8.65 9.21 22.40 0.21 -8.44 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 30 H 0.07 2.19 6.20 -2.39 -0.01 2.17 16 31 H 0.04 1.60 7.13 -2.39 -0.02 1.58 16 32 H 0.03 1.35 5.63 -2.39 -0.01 1.34 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.13 3.76 6.15 -2.91 -0.02 3.74 16 35 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.09 1.76 6.90 -2.39 -0.02 1.74 16 37 H 0.04 0.84 8.06 -2.39 -0.02 0.82 16 38 H 0.06 1.48 6.16 -2.39 -0.01 1.46 16 39 H 0.08 1.40 6.00 -2.39 -0.01 1.38 16 40 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 42 H 0.08 1.26 6.16 -2.39 -0.01 1.25 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 0.66 7.97 -2.39 -0.02 0.65 16 45 H 0.03 0.39 7.97 -2.39 -0.02 0.37 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.05 0.97 7.79 -2.39 -0.02 0.95 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.12 3.55 8.03 -2.91 -0.02 3.53 16 51 H 0.10 4.48 6.14 -2.91 -0.02 4.46 16 Total: -1.00 -67.19 389.95 -0.98 -68.18 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.83 Total: 22.91 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 7.39 Total: -19.73 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -11.09 Total: -116.24 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Total: -67.19 -0.98 -68.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231817342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.774 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds