Wall clock time and date at job start Tue Mar 31 2020 12:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00010 * 2 1 4 4 C 1.50701 * 109.47004 * 293.95271 * 3 2 1 5 5 H 1.08004 * 120.00046 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99955 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99942 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99938 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46973 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46955 * 119.99774 * 8 6 4 11 11 H 1.48492 * 109.47071 * 239.99677 * 8 6 4 12 12 C 1.46900 * 110.99902 * 123.95123 * 2 1 3 13 13 C 1.50699 * 109.47057 * 75.72518 * 12 2 1 14 14 C 1.38604 * 120.41793 * 254.61162 * 13 12 2 15 15 C 1.38761 * 118.42557 * 180.02562 * 14 13 12 16 16 Cl 1.73596 * 120.42568 * 179.97438 * 15 14 13 17 17 C 1.38323 * 119.15698 * 0.02562 * 15 14 13 18 18 N 1.31869 * 120.75450 * 359.97438 * 17 15 14 19 19 C 1.31952 * 121.72666 * 0.02562 * 18 17 15 20 20 Br 1.89100 * 119.61602 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47265 * 300.71891 * 1 2 3 22 22 H 1.09003 * 109.46786 * 60.71785 * 1 2 3 23 23 H 1.09002 * 109.46572 * 180.71261 * 1 2 3 24 24 H 1.08996 * 109.46925 * 53.94997 * 3 2 1 25 25 H 1.08997 * 109.47308 * 173.95118 * 3 2 1 26 26 H 0.96999 * 119.99679 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47252 * 315.72522 * 12 2 1 28 28 H 1.09005 * 109.47045 * 195.72855 * 12 2 1 29 29 H 1.08000 * 120.78484 * 0.04675 * 14 13 12 30 30 H 1.08000 * 119.62624 * 179.72673 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0489 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0016 -0.6154 8 14 1.5840 4.1864 -3.1387 9 1 0.8167 3.2437 -3.9919 10 1 0.7569 5.3879 -2.8602 11 1 2.8259 4.5929 -3.8440 12 6 1.9954 -0.7659 1.1376 13 6 1.8484 -2.2401 0.8618 14 6 0.8687 -2.9801 1.5050 15 6 0.7705 -4.3347 1.2204 16 17 -0.4369 -5.3108 1.9968 17 6 1.6477 -4.8976 0.3110 18 7 2.5678 -4.1624 -0.2822 19 6 2.6900 -2.8719 -0.0358 20 35 4.0305 -1.8743 -0.9211 21 1 -0.3633 0.5249 0.8834 22 1 -0.3633 0.5027 -0.8964 23 1 -0.3632 -1.0276 0.0128 24 1 1.5611 1.9274 0.8308 25 1 3.0797 1.3445 0.1083 26 1 2.9874 4.9177 -0.7774 27 1 1.4387 -0.5075 2.0384 28 1 3.0492 -0.5263 1.2805 29 1 0.1976 -2.5134 2.2108 30 1 1.5809 -5.9520 0.0872 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232960548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:05 Heat of formation + Delta-G solvation = 36.222156 kcal Electronic energy + Delta-G solvation = -16396.840009 eV Core-core repulsion = 13492.414435 eV Total energy + Delta-G solvation = -2904.425575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46321 -37.01475 -36.64623 -33.24383 -32.50177 -32.04192 -29.66108 -27.38097 -26.88878 -24.26233 -23.48202 -22.07294 -20.34784 -17.17845 -17.08404 -16.41273 -15.64882 -15.17889 -14.59866 -14.16300 -13.93357 -13.80761 -13.42312 -12.83483 -12.46672 -12.12689 -11.98156 -11.72108 -11.30900 -11.22337 -10.96482 -10.67488 -10.56045 -10.49471 -10.06839 -9.92603 -9.78733 -9.65743 -9.22998 -8.71054 -8.45043 -7.35596 -6.04449 -4.04989 0.61490 0.95686 1.50983 1.87268 3.30224 3.36715 3.38357 3.43278 4.26591 4.41768 4.51659 4.62818 4.72009 5.05750 5.25870 5.32213 5.49642 5.64976 5.89233 5.97839 6.04869 6.17221 6.26043 6.66733 7.20860 7.26771 7.49236 7.75717 8.01380 8.11883 8.47849 9.02420 9.59167 11.06497 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.004729 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.559348 B = 5920.004164 C = 6888.697179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.527 5.527 3 C 0.196 3.804 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.084 3.916 13 C -0.068 4.068 14 C -0.061 4.061 15 C -0.081 4.081 16 Cl -0.055 7.055 17 C 0.111 3.889 18 N -0.449 5.449 19 C 0.142 3.858 20 Br 0.028 6.972 21 H 0.015 0.985 22 H 0.077 0.923 23 H 0.040 0.960 24 H -0.008 1.008 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 -16.698 5.129 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.251 5.251 3 C 0.072 3.928 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.045 4.045 13 C -0.074 4.074 14 C -0.089 4.089 15 C -0.110 4.110 16 Cl -0.027 7.027 17 C -0.049 4.049 18 N -0.159 5.159 19 C -0.075 4.075 20 Br 0.113 6.887 21 H 0.033 0.967 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.009 0.991 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.167 0.833 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.291 -16.821 3.850 17.259 hybrid contribution -1.518 0.955 0.759 1.947 sum -1.808 -15.866 4.609 16.621 Atomic orbital electron populations 1.22257 0.88731 0.98916 1.01278 1.62116 1.06883 1.18071 1.38024 1.19766 0.95579 0.80681 0.96781 1.21154 1.34650 0.96757 1.01568 0.91784 1.24954 0.95329 0.97349 0.96874 1.69962 1.38491 1.11413 1.33992 0.86484 0.78183 0.79337 0.83703 1.19643 1.21169 1.21033 1.21114 1.02261 0.87111 0.93992 1.20898 0.93533 0.98359 0.94582 1.21493 0.97112 0.91480 0.98768 1.22097 0.95657 0.93175 1.00101 1.98379 1.54463 1.70109 1.79721 1.22725 0.89868 1.00358 0.91993 1.67691 1.19709 1.05541 1.22979 1.23013 0.97071 0.91368 0.96059 1.96911 1.46760 1.68328 1.76686 0.96653 0.90474 0.94165 0.99063 0.94783 0.93005 0.93843 0.88944 0.83260 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.17 60.07 0.55 1.23 16 2 N -0.53 -10.59 4.40 -245.82 -1.08 -11.68 16 3 C 0.20 4.82 4.70 -4.97 -0.02 4.80 16 4 C -0.50 -13.60 8.52 -34.44 -0.29 -13.90 16 5 H 0.06 1.74 7.10 -52.48 -0.37 1.37 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.08 1.40 4.42 -4.98 -0.02 1.38 16 13 C -0.07 -1.02 4.82 -104.46 -0.50 -1.53 16 14 C -0.06 -0.76 9.13 -39.25 -0.36 -1.12 16 15 C -0.08 -0.93 6.34 -39.36 -0.25 -1.18 16 16 Cl -0.06 -0.54 28.99 -51.86 -1.50 -2.04 16 17 C 0.11 1.33 10.99 -17.50 -0.19 1.14 16 18 N -0.45 -6.65 10.32 -11.62 -0.12 -6.77 16 19 C 0.14 2.25 7.16 -17.47 -0.13 2.12 16 20 Br 0.03 0.47 32.09 -68.01 -2.18 -1.71 16 21 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.08 1.54 6.88 -51.93 -0.36 1.19 16 23 H 0.04 0.65 7.12 -51.93 -0.37 0.28 16 24 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 25 H 0.03 0.89 7.83 -51.93 -0.41 0.48 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.04 0.66 7.85 -51.93 -0.41 0.25 16 28 H 0.09 1.57 7.02 -51.93 -0.36 1.21 16 29 H 0.15 1.59 8.04 -52.49 -0.42 1.16 16 30 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -28.85 295.14 -9.14 -38.00 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -3.10 Total: -5.67 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.31 Total: -5.60 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.47 Total: -43.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Atomic # 35 Polarization: 0.47 SS G_CDS: -2.18 Total: -1.71 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.85 -9.14 -38.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232960548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.218 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds