Wall clock time and date at job start Tue Mar 31 2020 12:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00010 * 2 1 4 4 C 1.50701 * 109.47004 * 293.95271 * 3 2 1 5 5 H 1.08004 * 120.00046 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99955 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99942 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99938 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46973 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46955 * 119.99774 * 8 6 4 11 11 H 1.48492 * 109.47071 * 239.99677 * 8 6 4 12 12 C 1.46900 * 110.99902 * 123.95123 * 2 1 3 13 13 C 1.50699 * 109.47057 * 75.72518 * 12 2 1 14 14 C 1.38604 * 120.41793 * 254.61162 * 13 12 2 15 15 C 1.38761 * 118.42557 * 180.02562 * 14 13 12 16 16 Cl 1.73596 * 120.42568 * 179.97438 * 15 14 13 17 17 C 1.38323 * 119.15698 * 0.02562 * 15 14 13 18 18 N 1.31869 * 120.75450 * 359.97438 * 17 15 14 19 19 C 1.31952 * 121.72666 * 0.02562 * 18 17 15 20 20 Br 1.89100 * 119.61602 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47265 * 300.71891 * 1 2 3 22 22 H 1.09003 * 109.46786 * 60.71785 * 1 2 3 23 23 H 1.09002 * 109.46572 * 180.71261 * 1 2 3 24 24 H 1.08996 * 109.46925 * 53.94997 * 3 2 1 25 25 H 1.08997 * 109.47308 * 173.95118 * 3 2 1 26 26 H 0.96999 * 119.99679 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47252 * 315.72522 * 12 2 1 28 28 H 1.09005 * 109.47045 * 195.72855 * 12 2 1 29 29 H 1.08000 * 120.78484 * 0.04675 * 14 13 12 30 30 H 1.08000 * 119.62624 * 179.72673 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0489 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0016 -0.6154 8 14 1.5840 4.1864 -3.1387 9 1 0.8167 3.2437 -3.9919 10 1 0.7569 5.3879 -2.8602 11 1 2.8259 4.5929 -3.8440 12 6 1.9954 -0.7659 1.1376 13 6 1.8484 -2.2401 0.8618 14 6 0.8687 -2.9801 1.5050 15 6 0.7705 -4.3347 1.2204 16 17 -0.4369 -5.3108 1.9968 17 6 1.6477 -4.8976 0.3110 18 7 2.5678 -4.1624 -0.2822 19 6 2.6900 -2.8719 -0.0358 20 35 4.0305 -1.8743 -0.9211 21 1 -0.3633 0.5249 0.8834 22 1 -0.3633 0.5027 -0.8964 23 1 -0.3632 -1.0276 0.0128 24 1 1.5611 1.9274 0.8308 25 1 3.0797 1.3445 0.1083 26 1 2.9874 4.9177 -0.7774 27 1 1.4387 -0.5075 2.0384 28 1 3.0492 -0.5263 1.2805 29 1 0.1976 -2.5134 2.2108 30 1 1.5809 -5.9520 0.0872 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232960548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:05 Heat of formation + Delta-G solvation = 18.510526 kcal Electronic energy + Delta-G solvation = -16397.608043 eV Core-core repulsion = 13492.414435 eV Total energy + Delta-G solvation = -2905.193609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53613 -38.36215 -37.71054 -34.94289 -33.76684 -33.45024 -30.84691 -29.21186 -28.26441 -25.91455 -24.55322 -23.49987 -21.91738 -18.54561 -18.17552 -18.04980 -16.93640 -16.64712 -16.16712 -15.68934 -15.30560 -15.26934 -14.41615 -14.26086 -13.80365 -13.48725 -13.40432 -13.13438 -12.96044 -12.66765 -12.57149 -12.30433 -12.22871 -11.83341 -11.66170 -11.30298 -11.21160 -10.86135 -10.77387 -10.56580 -9.79716 -8.98709 -8.15957 -6.23452 -0.43747 -0.07237 0.39294 0.92055 1.41440 1.43560 1.55582 2.30442 2.44057 3.17739 3.21154 3.40525 3.58640 3.59250 3.76382 4.11574 4.34487 4.50499 4.65378 4.68776 4.74116 4.84236 5.10751 5.14462 5.24549 5.37803 5.69713 6.09405 6.34182 6.44866 6.62239 6.92250 7.45390 8.95008 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.004729 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.559348 B = 5920.004164 C = 6888.697179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.534 5.534 3 C 0.215 3.785 4 C -0.513 4.513 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.282 1.282 12 C 0.088 3.912 13 C -0.080 4.080 14 C -0.053 4.053 15 C -0.074 4.074 16 Cl -0.031 7.031 17 C 0.118 3.882 18 N -0.468 5.468 19 C 0.127 3.873 20 Br 0.002 6.998 21 H 0.020 0.980 22 H 0.057 0.943 23 H 0.067 0.933 24 H -0.033 1.033 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -18.398 5.284 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.258 5.258 3 C 0.089 3.911 4 C -0.551 4.551 5 H 0.078 0.922 6 C -0.192 4.192 7 N -0.574 5.574 8 Si 0.785 3.215 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.208 1.208 12 C -0.041 4.041 13 C -0.085 4.085 14 C -0.080 4.080 15 C -0.103 4.103 16 Cl -0.002 7.002 17 C -0.043 4.043 18 N -0.178 5.178 19 C -0.089 4.089 20 Br 0.087 6.913 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.086 0.914 24 H -0.016 1.016 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.189 0.811 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.898 -18.543 4.009 19.066 hybrid contribution -1.101 1.298 0.803 1.882 sum -2.999 -17.245 4.813 18.153 Atomic orbital electron populations 1.22212 0.87547 1.00417 1.00487 1.61956 1.07953 1.15529 1.40354 1.19351 0.93999 0.82881 0.94858 1.21448 1.34212 0.97114 1.02334 0.92184 1.25761 0.95266 0.98125 1.00086 1.70073 1.39635 1.11804 1.35899 0.85484 0.77955 0.78343 0.79764 1.18965 1.20524 1.20784 1.21048 1.01708 0.87969 0.93336 1.20654 0.94865 0.97230 0.95781 1.21693 0.96249 0.91838 0.98247 1.22115 0.95685 0.93030 0.99474 1.98399 1.53308 1.69328 1.79156 1.23268 0.88625 1.01418 0.90976 1.67666 1.20991 1.05176 1.23961 1.22899 0.97236 0.91971 0.96772 1.96876 1.48053 1.69110 1.77285 0.96194 0.92465 0.91407 1.01566 0.97149 0.92869 0.92145 0.90082 0.81082 0.78337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.17 127.69 1.17 2.67 16 2 N -0.53 -21.50 4.40 -931.62 -4.10 -25.60 16 3 C 0.21 10.84 4.70 85.56 0.40 11.24 16 4 C -0.51 -28.17 8.52 25.60 0.22 -27.95 16 5 H 0.06 3.29 7.10 -2.91 -0.02 3.27 16 6 C 0.01 0.31 5.46 84.65 0.46 0.77 16 7 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.09 2.89 4.42 85.56 0.38 3.26 16 13 C -0.08 -2.28 4.82 -19.76 -0.10 -2.37 16 14 C -0.05 -1.16 9.13 22.48 0.21 -0.96 16 15 C -0.07 -1.45 6.34 22.42 0.14 -1.30 16 16 Cl -0.03 -0.49 28.99 -2.72 -0.08 -0.56 16 17 C 0.12 2.47 10.99 84.71 0.93 3.40 16 18 N -0.47 -13.08 10.32 -190.66 -1.97 -15.05 16 19 C 0.13 3.93 7.16 84.69 0.61 4.54 16 20 Br 0.00 0.07 32.09 -20.37 -0.65 -0.59 16 21 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.06 2.26 6.88 -2.39 -0.02 2.25 16 23 H 0.07 2.04 7.12 -2.39 -0.02 2.02 16 24 H -0.03 -1.82 8.12 -2.39 -0.02 -1.84 16 25 H 0.01 0.57 7.83 -2.39 -0.02 0.55 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.06 1.76 7.85 -2.39 -0.02 1.74 16 28 H 0.08 2.83 7.02 -2.38 -0.02 2.81 16 29 H 0.17 2.98 8.04 -2.91 -0.02 2.95 16 30 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -62.21 295.14 1.09 -61.12 By element: Atomic # 1 Polarization: -5.04 SS G_CDS: 1.16 Total: -3.88 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 4.42 Total: -6.71 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -5.78 Total: -95.43 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.56 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -0.65 Total: -0.59 kcal Total: -62.21 1.09 -61.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232960548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.629 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds