Wall clock time and date at job start Tue Mar 31 2020 12:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 H 1.08003 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99809 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99969 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47271 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.47155 * 119.99875 * 8 6 4 11 11 H 1.48499 * 109.47180 * 239.99883 * 8 6 4 12 12 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 13 13 C 1.50701 * 109.46965 * 293.95399 * 12 2 1 14 14 C 1.38614 * 120.78847 * 259.72061 * 13 12 2 15 15 C 1.38308 * 119.16652 * 179.73440 * 14 13 12 16 16 Br 1.89099 * 119.61497 * 180.27530 * 15 14 13 17 17 N 1.31952 * 120.76955 * 0.55429 * 15 14 13 18 18 C 1.31860 * 121.72550 * 359.71811 * 17 15 14 19 19 C 1.38324 * 120.75833 * 0.02562 * 18 17 15 20 20 Cl 1.73598 * 120.42356 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 22 22 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 23 23 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 24 24 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 25 25 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 26 26 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47164 * 53.95342 * 12 2 1 28 28 H 1.08996 * 109.46920 * 173.95376 * 12 2 1 29 29 H 1.08000 * 120.41057 * 0.02562 * 14 13 12 30 30 H 1.08007 * 119.62286 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0270 3.3493 1.5286 7 7 2.7121 4.0018 0.6151 8 14 1.5820 4.1870 3.1378 9 1 0.8150 3.2443 3.9912 10 1 2.8236 4.5946 3.8436 11 1 0.7545 5.3880 2.8585 12 6 1.9954 -0.7660 -1.1377 13 6 1.6368 -2.2204 -0.9730 14 6 2.5662 -3.1305 -0.4942 15 6 2.1995 -4.4564 -0.3511 16 35 3.4550 -5.7073 0.3083 17 7 0.9854 -4.8596 -0.6744 18 6 0.0774 -4.0233 -1.1378 19 6 0.3703 -2.6815 -1.3029 20 17 -0.8315 -1.5882 -1.9143 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3632 0.5739 0.8525 23 1 -0.3633 0.4513 -0.9231 24 1 3.0798 1.3443 -0.1082 25 1 1.5611 1.9273 -0.8308 26 1 2.9867 4.9179 0.7771 27 1 1.5610 -0.3872 -2.0628 28 1 3.0796 -0.6611 -1.1758 29 1 3.5628 -2.8074 -0.2319 30 1 -0.9060 -4.3902 -1.3923 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233425205.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:26 Heat of formation + Delta-G solvation = 46.871865 kcal Electronic energy + Delta-G solvation = -16426.144915 eV Core-core repulsion = 13522.181146 eV Total energy + Delta-G solvation = -2903.963769 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56605 -37.24308 -36.42975 -33.37106 -32.51198 -32.15840 -29.72609 -27.69669 -27.02827 -24.53989 -23.51075 -21.95151 -20.36580 -17.21248 -17.01143 -16.39785 -15.88634 -15.46465 -14.72106 -14.25428 -14.16540 -13.94481 -13.66186 -12.50570 -12.40232 -12.24613 -12.03934 -11.73715 -11.31808 -11.08366 -10.98561 -10.75888 -10.71006 -10.59065 -10.09244 -10.03906 -9.83536 -9.60582 -9.25354 -8.90076 -8.48970 -7.37655 -6.08358 -4.09696 0.53364 0.92487 1.12285 1.93787 3.28110 3.29812 3.35900 3.40952 4.17100 4.37086 4.44450 4.64347 4.74353 5.03025 5.24669 5.28330 5.45980 5.57016 5.87637 5.98112 6.08357 6.17765 6.31995 6.72334 7.15699 7.23287 7.37176 7.70716 7.95546 8.06996 8.42830 8.97708 9.54820 11.02577 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.003944 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.486229 B = 7098.333053 C = 8268.268911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.082 3.918 13 C 0.001 3.999 14 C -0.110 4.110 15 C 0.122 3.878 16 Br -0.004 7.004 17 N -0.455 5.455 18 C 0.120 3.880 19 C -0.077 4.077 20 Cl -0.035 7.035 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.020 0.980 24 H 0.032 0.968 25 H -0.006 1.006 26 H 0.261 0.739 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.390 -18.518 -5.167 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.255 5.255 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.046 4.046 13 C -0.009 4.009 14 C -0.133 4.133 15 C -0.094 4.094 16 Br 0.080 6.920 17 N -0.165 5.165 18 C -0.040 4.040 19 C -0.107 4.107 20 Cl -0.006 7.006 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.012 0.988 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.173 0.827 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.985 -19.807 -4.469 20.329 hybrid contribution -0.660 2.194 -0.182 2.298 sum -1.644 -17.613 -4.651 18.291 Atomic orbital electron populations 1.22903 0.88442 1.00182 1.00779 1.62266 1.07547 1.18056 1.37636 1.19783 0.95448 0.80895 0.97017 1.21158 1.34902 0.96911 1.01582 0.91754 1.24973 0.95231 0.97291 0.97021 1.69963 1.38340 1.11459 1.34021 0.86443 0.78207 0.79323 0.83475 1.19635 1.20951 1.21081 1.21149 1.01528 0.87038 0.94880 1.20435 0.90750 0.97729 0.91985 1.21943 1.01833 0.90837 0.98698 1.22812 0.93309 0.92127 1.01174 1.96787 1.51620 1.58283 1.85343 1.67541 1.00686 1.37480 1.10837 1.22724 0.98828 0.87369 0.95066 1.22143 0.92161 0.92763 1.03592 1.98400 1.54784 1.62010 1.85399 0.92971 0.91042 0.96127 0.95024 0.98809 0.92916 0.93266 0.89305 0.82671 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 7.50 60.07 0.45 0.93 16 2 N -0.53 -10.94 4.74 -245.83 -1.17 -12.11 16 3 C 0.19 4.83 4.72 -4.98 -0.02 4.81 16 4 C -0.51 -13.90 8.46 -34.44 -0.29 -14.20 16 5 H 0.06 1.77 7.12 -52.48 -0.37 1.39 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.08 1.37 4.98 -4.97 -0.02 1.35 16 13 C 0.00 0.01 5.18 -104.29 -0.54 -0.53 16 14 C -0.11 -1.48 9.50 -39.42 -0.37 -1.85 16 15 C 0.12 1.61 7.16 -17.47 -0.13 1.48 16 16 Br 0.00 -0.05 33.87 -68.01 -2.30 -2.35 16 17 N -0.45 -6.12 10.32 -11.62 -0.12 -6.24 16 18 C 0.12 1.46 10.99 -17.51 -0.19 1.27 16 19 C -0.08 -1.03 5.26 -39.36 -0.21 -1.23 16 20 Cl -0.03 -0.46 22.83 -51.86 -1.18 -1.64 16 21 H 0.05 0.89 4.65 -51.93 -0.24 0.64 16 22 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 23 H 0.02 0.38 6.76 -51.93 -0.35 0.03 16 24 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 25 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.05 0.81 7.44 -51.93 -0.39 0.42 16 28 H 0.09 1.41 7.83 -51.93 -0.41 1.00 16 29 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -29.16 286.16 -9.09 -38.26 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: -2.92 Total: -4.65 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.43 Total: -6.50 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.55 Total: -43.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.18 Total: -1.64 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -2.30 Total: -2.35 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.16 -9.09 -38.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233425205.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.128 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds