Wall clock time and date at job start Tue Mar 31 2020 12:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 H 1.08003 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99809 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99969 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47271 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.47155 * 119.99875 * 8 6 4 11 11 H 1.48499 * 109.47180 * 239.99883 * 8 6 4 12 12 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 13 13 C 1.50701 * 109.46965 * 293.95399 * 12 2 1 14 14 C 1.38614 * 120.78847 * 259.72061 * 13 12 2 15 15 C 1.38308 * 119.16652 * 179.73440 * 14 13 12 16 16 Br 1.89099 * 119.61497 * 180.27530 * 15 14 13 17 17 N 1.31952 * 120.76955 * 0.55429 * 15 14 13 18 18 C 1.31860 * 121.72550 * 359.71811 * 17 15 14 19 19 C 1.38324 * 120.75833 * 0.02562 * 18 17 15 20 20 Cl 1.73598 * 120.42356 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 22 22 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 23 23 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 24 24 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 25 25 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 26 26 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47164 * 53.95342 * 12 2 1 28 28 H 1.08996 * 109.46920 * 173.95376 * 12 2 1 29 29 H 1.08000 * 120.41057 * 0.02562 * 14 13 12 30 30 H 1.08007 * 119.62286 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0270 3.3493 1.5286 7 7 2.7121 4.0018 0.6151 8 14 1.5820 4.1870 3.1378 9 1 0.8150 3.2443 3.9912 10 1 2.8236 4.5946 3.8436 11 1 0.7545 5.3880 2.8585 12 6 1.9954 -0.7660 -1.1377 13 6 1.6368 -2.2204 -0.9730 14 6 2.5662 -3.1305 -0.4942 15 6 2.1995 -4.4564 -0.3511 16 35 3.4550 -5.7073 0.3083 17 7 0.9854 -4.8596 -0.6744 18 6 0.0774 -4.0233 -1.1378 19 6 0.3703 -2.6815 -1.3029 20 17 -0.8315 -1.5882 -1.9143 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3632 0.5739 0.8525 23 1 -0.3633 0.4513 -0.9231 24 1 3.0798 1.3443 -0.1082 25 1 1.5611 1.9273 -0.8308 26 1 2.9867 4.9179 0.7771 27 1 1.5610 -0.3872 -2.0628 28 1 3.0796 -0.6611 -1.1758 29 1 3.5628 -2.8074 -0.2319 30 1 -0.9060 -4.3902 -1.3923 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233425205.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:26 Heat of formation + Delta-G solvation = 28.550296 kcal Electronic energy + Delta-G solvation = -16426.939398 eV Core-core repulsion = 13522.181146 eV Total energy + Delta-G solvation = -2904.758252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.62981 -38.62170 -37.67456 -35.04681 -33.80399 -33.49884 -30.72724 -29.48090 -28.55634 -26.18688 -24.62023 -23.42643 -21.93114 -18.67635 -18.20652 -17.92616 -17.01813 -16.94140 -16.48022 -15.70368 -15.33249 -15.26588 -15.13736 -14.11225 -13.79598 -13.63028 -13.58254 -13.19724 -12.80866 -12.72870 -12.57052 -12.35025 -11.98616 -11.97140 -11.57693 -11.38613 -11.31197 -10.87516 -10.80864 -10.60387 -9.92627 -9.05900 -8.20736 -6.29846 -0.50638 -0.13793 0.13892 0.88426 1.41106 1.42489 1.55259 2.25177 2.41345 3.12598 3.14693 3.31066 3.49621 3.61063 3.65764 4.09039 4.39258 4.45812 4.54217 4.60845 4.68207 4.84738 5.05901 5.13805 5.18547 5.28165 5.63707 6.01875 6.23226 6.36401 6.53114 6.85216 7.39620 8.90371 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.003944 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.486229 B = 7098.333053 C = 8268.268911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.539 5.539 3 C 0.208 3.792 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.006 3.994 7 N -0.932 5.932 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.085 3.915 13 C -0.012 4.012 14 C -0.112 4.112 15 C 0.115 3.885 16 Br 0.012 6.988 17 N -0.463 5.463 18 C 0.129 3.871 19 C -0.080 4.080 20 Cl -0.033 7.033 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.023 0.977 24 H 0.012 0.988 25 H -0.032 1.032 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.165 0.835 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -19.714 -4.603 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.263 5.263 3 C 0.082 3.918 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.573 5.573 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.205 1.205 12 C -0.043 4.043 13 C -0.022 4.022 14 C -0.134 4.134 15 C -0.101 4.101 16 Br 0.097 6.903 17 N -0.174 5.174 18 C -0.031 4.031 19 C -0.110 4.110 20 Cl -0.004 7.004 21 H 0.095 0.905 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.030 0.970 25 H -0.014 1.014 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.183 0.817 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.625 -21.028 -3.910 21.450 hybrid contribution -0.449 2.467 -0.407 2.541 sum -2.074 -18.561 -4.317 19.169 Atomic orbital electron populations 1.22894 0.87515 1.01261 0.99868 1.62127 1.08431 1.15669 1.40059 1.19420 0.94102 0.83038 0.95198 1.21454 1.34789 0.97449 1.02334 0.92134 1.25824 0.95029 0.97988 1.00431 1.70073 1.39326 1.11904 1.35978 0.85396 0.78085 0.78229 0.79283 1.18966 1.20376 1.20476 1.21102 1.01651 0.88033 0.93470 1.20229 0.91838 0.96447 0.93694 1.22043 1.02131 0.90897 0.98353 1.23018 0.93669 0.92447 1.00943 1.96801 1.50945 1.57524 1.85073 1.67637 1.00916 1.37804 1.11016 1.23184 0.99704 0.86582 0.93646 1.22226 0.91726 0.93405 1.03666 1.98402 1.54587 1.62146 1.85296 0.90543 0.93254 0.95896 0.96960 1.01446 0.92666 0.93098 0.88957 0.81704 0.78120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.24 7.50 127.69 0.96 2.19 16 2 N -0.54 -22.30 4.74 -931.66 -4.42 -26.72 16 3 C 0.21 10.68 4.72 85.56 0.40 11.09 16 4 C -0.52 -28.98 8.46 25.60 0.22 -28.76 16 5 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 6 C 0.01 0.31 5.46 84.65 0.46 0.77 16 7 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 8 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.09 2.82 4.98 85.56 0.43 3.24 16 13 C -0.01 -0.34 5.18 -19.65 -0.10 -0.44 16 14 C -0.11 -2.83 9.50 22.38 0.21 -2.62 16 15 C 0.11 2.83 7.16 84.69 0.61 3.43 16 16 Br 0.01 0.26 33.87 -20.37 -0.69 -0.43 16 17 N -0.46 -11.39 10.32 -190.67 -1.97 -13.36 16 18 C 0.13 2.79 10.99 84.71 0.93 3.72 16 19 C -0.08 -2.00 5.26 22.42 0.12 -1.88 16 20 Cl -0.03 -0.82 22.83 -2.72 -0.06 -0.88 16 21 H 0.08 2.51 4.65 -2.38 -0.01 2.50 16 22 H 0.05 2.07 6.76 -2.39 -0.02 2.05 16 23 H 0.02 0.85 6.76 -2.39 -0.02 0.83 16 24 H 0.01 0.67 7.93 -2.39 -0.02 0.65 16 25 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.05 1.67 7.44 -2.39 -0.02 1.65 16 28 H 0.09 2.94 7.83 -2.39 -0.02 2.92 16 29 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -61.52 286.16 0.57 -60.95 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 1.16 Total: -1.46 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.23 Total: -9.25 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -6.10 Total: -94.67 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.06 Total: -0.88 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -0.69 Total: -0.43 kcal Total: -61.52 0.57 -60.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233425205.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.502 kcal (2) G-P(sol) polarization free energy of solvation -61.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds