Wall clock time and date at job start Tue Mar 31 2020 12:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34716 * 116.99831 * 2 1 4 4 O 1.21478 * 120.00153 * 359.97438 * 3 2 1 5 5 C 1.47659 * 119.99969 * 180.02562 * 3 2 1 6 6 C 1.39633 * 120.13451 * 0.02562 * 5 3 2 7 7 C 1.38378 * 119.80437 * 179.97438 * 6 5 3 8 8 O 1.35934 * 119.96476 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00078 * 0.16094 * 8 7 6 10 10 H 1.09002 * 109.47100 * 23.89985 * 9 8 7 11 11 C 1.50700 * 109.47117 * 143.89445 * 9 8 7 12 12 H 1.08001 * 119.99800 * 25.54369 * 11 9 8 13 13 C 1.37880 * 120.00252 * 205.53162 * 11 9 8 14 14 N 1.31515 * 119.99818 * 185.07712 * 13 11 9 15 15 Si 1.86802 * 119.99732 * 5.07754 * 13 11 9 16 16 H 1.48506 * 109.46774 * 94.53188 * 15 13 11 17 17 H 1.48494 * 109.46931 * 214.52630 * 15 13 11 18 18 H 1.48496 * 109.47371 * 334.53343 * 15 13 11 19 19 C 1.53000 * 109.47527 * 263.90152 * 9 8 7 20 20 Cl 1.80295 * 109.47112 * 63.50741 * 19 9 8 21 21 C 1.38888 * 120.06991 * 359.72351 * 7 6 5 22 22 C 1.38200 * 120.27440 * 0.55682 * 21 7 6 23 23 C 1.38154 * 120.19685 * 359.43994 * 22 21 7 24 24 Cl 1.73601 * 120.03870 * 180.25665 * 23 22 21 25 25 H 1.09000 * 109.47035 * 299.99814 * 1 2 3 26 26 H 1.09005 * 109.47085 * 59.99659 * 1 2 3 27 27 H 1.08998 * 109.47106 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.09903 * 359.95878 * 6 5 3 29 29 H 0.97006 * 119.99506 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47099 * 183.51143 * 19 9 8 31 31 H 1.08995 * 109.46784 * 303.50905 * 19 9 8 32 32 H 1.08002 * 119.86387 * 180.29310 * 21 7 6 33 33 H 1.08000 * 119.89815 * 179.72226 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5382 1.2777 -0.0006 6 6 4.3014 0.1084 -0.0017 7 6 5.6829 0.1888 -0.0027 8 8 6.4291 -0.9474 -0.0043 9 6 5.7211 -2.1886 -0.0084 10 1 4.7255 -2.0376 -0.4259 11 6 6.4705 -3.1917 -0.8469 12 1 7.5369 -3.0908 -0.9849 13 6 5.7949 -4.2384 -1.4376 14 7 6.4612 -5.1689 -2.0857 15 14 3.9333 -4.3349 -1.3174 16 1 3.3267 -3.7151 -2.5230 17 1 3.5160 -5.7573 -1.2290 18 1 3.4772 -3.6089 -0.1050 19 6 5.5992 -2.7110 1.4245 20 17 4.6143 -1.5600 2.4022 21 6 6.3078 1.4292 -0.0085 22 6 5.5554 2.5884 -0.0016 23 6 4.1755 2.5212 -0.0006 24 17 3.2344 3.9800 0.0013 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.8151 -0.8559 -0.0014 29 1 5.9858 -5.9051 -2.5016 30 1 5.1145 -3.6872 1.4153 31 1 6.5927 -2.8028 1.8634 32 1 7.3862 1.4881 -0.0141 33 1 6.0476 3.5497 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233969879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:50 Heat of formation + Delta-G solvation = -102.632960 kcal Electronic energy + Delta-G solvation = -22471.864030 eV Core-core repulsion = 18743.552180 eV Total energy + Delta-G solvation = -3728.311850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55466 -39.54627 -37.52611 -36.23710 -36.00075 -35.24847 -33.38498 -31.70360 -30.71467 -29.16677 -27.72182 -25.43255 -24.26532 -23.00422 -21.09384 -20.47887 -18.64011 -17.29810 -17.19613 -16.32311 -16.28286 -16.13722 -15.46579 -15.07129 -14.51306 -14.22951 -13.59913 -13.54494 -13.46113 -13.20644 -12.91005 -12.73388 -12.37687 -12.32036 -11.91683 -11.78635 -11.35231 -11.26654 -11.16244 -11.07416 -10.75278 -10.70855 -10.15673 -9.95278 -9.86718 -9.67827 -9.46394 -9.03852 -8.98123 -7.74502 -6.54662 -4.62422 0.70556 1.38805 2.27402 2.64532 2.73080 2.85486 3.01594 3.07630 3.12806 3.78659 3.79946 3.99457 4.64335 4.76433 4.85343 5.09467 5.16860 5.21414 5.24246 5.46523 5.49418 5.65284 5.74154 5.81889 5.88108 6.05876 6.17200 6.28686 6.38494 6.48287 6.69138 7.02993 7.69819 7.80470 8.16437 8.58050 9.00543 10.55626 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.005525 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.141087 B = 5066.668669 C = 5814.778459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.351 6.351 3 C 0.506 3.494 4 O -0.489 6.489 5 C -0.085 4.085 6 C -0.135 4.135 7 C 0.150 3.850 8 O -0.291 6.291 9 C 0.175 3.825 10 H 0.051 0.949 11 C -0.528 4.528 12 H 0.093 0.907 13 C 0.088 3.912 14 N -0.867 5.867 15 Si 0.854 3.146 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.253 1.253 19 C -0.041 4.041 20 Cl -0.227 7.227 21 C -0.118 4.118 22 C -0.086 4.086 23 C -0.034 4.034 24 Cl -0.049 7.049 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.154 0.846 29 H 0.274 0.726 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 10.156 4.616 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.350 3.650 4 O -0.377 6.377 5 C -0.087 4.087 6 C -0.154 4.154 7 C 0.102 3.898 8 O -0.203 6.203 9 C 0.120 3.880 10 H 0.069 0.931 11 C -0.565 4.565 12 H 0.111 0.889 13 C -0.119 4.119 14 N -0.502 5.502 15 Si 0.678 3.322 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.176 1.176 19 C -0.104 4.104 20 Cl -0.201 7.201 21 C -0.137 4.137 22 C -0.105 4.105 23 C -0.061 4.061 24 Cl -0.020 7.020 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.172 0.828 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.162 0.838 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.591 10.411 4.573 13.143 hybrid contribution -1.474 -0.245 0.068 1.496 sum -8.065 10.167 4.641 13.782 Atomic orbital electron populations 1.23264 0.76144 1.03730 1.02438 1.86608 1.23379 1.32521 1.84220 1.21055 0.88931 0.81641 0.73328 1.90889 1.66621 1.35330 1.44882 1.18553 0.89454 0.92668 1.08052 1.21762 0.93495 0.98878 1.01303 1.19113 0.89570 0.88499 0.92624 1.86290 1.35624 1.12524 1.85843 1.20949 0.94889 0.80586 0.91588 0.93128 1.20674 0.97585 1.07633 1.30589 0.88905 1.24894 0.98513 0.94806 0.93690 1.69834 1.36431 1.11282 1.32635 0.87179 0.85619 0.78917 0.80456 1.19033 1.19983 1.17647 1.26067 0.96991 0.94046 0.93273 1.98680 1.76452 1.68099 1.76893 1.20624 1.01047 0.88971 1.03025 1.20701 0.90572 0.99029 1.00177 1.20678 0.91980 0.86676 1.06754 1.98372 1.72700 1.34293 1.96646 0.91870 0.91852 0.88050 0.82824 0.91513 0.88364 0.88428 0.83783 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.35 -5.58 9.82 -40.54 -0.40 -5.98 16 3 C 0.51 8.60 7.89 34.58 0.27 8.87 16 4 O -0.49 -8.59 13.75 -19.25 -0.26 -8.86 16 5 C -0.09 -1.45 5.87 -104.97 -0.62 -2.07 16 6 C -0.14 -2.43 6.75 -39.01 -0.26 -2.69 16 7 C 0.15 2.67 6.03 -39.29 -0.24 2.43 16 8 O -0.29 -5.89 9.69 -19.53 -0.19 -6.08 16 9 C 0.18 3.73 1.70 -27.88 -0.05 3.68 16 10 H 0.05 1.09 2.91 -51.93 -0.15 0.94 16 11 C -0.53 -13.20 9.23 -34.44 -0.32 -13.52 16 12 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 13 C 0.09 2.23 5.47 -17.82 -0.10 2.13 16 14 N -0.87 -23.54 13.96 55.43 0.77 -22.76 16 15 Si 0.85 18.49 26.37 -169.99 -4.48 14.01 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.25 -5.11 5.97 56.52 0.34 -4.77 16 19 C -0.04 -0.78 5.95 37.16 0.22 -0.56 16 20 Cl -0.23 -4.04 25.78 -51.86 -1.34 -5.38 16 21 C -0.12 -1.73 9.98 -39.35 -0.39 -2.12 16 22 C -0.09 -1.15 9.81 -39.63 -0.39 -1.54 16 23 C -0.03 -0.52 6.35 -39.05 -0.25 -0.77 16 24 Cl -0.05 -0.73 26.01 -51.86 -1.35 -2.08 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.15 2.92 4.63 -52.49 -0.24 2.68 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 31 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -27.59 310.66 -6.52 -34.12 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -2.91 Total: 2.97 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.05 Total: -4.63 kcal Atomic # 7 Polarization: -23.54 SS G_CDS: 0.77 Total: -22.76 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.85 Total: -20.92 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -4.48 Total: 14.01 kcal Atomic # 17 Polarization: -4.77 SS G_CDS: -2.69 Total: -7.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.59 -6.52 -34.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233969879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.517 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds