Wall clock time and date at job start Tue Mar 31 2020 12:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34716 * 116.99831 * 2 1 4 4 O 1.21478 * 120.00153 * 359.97438 * 3 2 1 5 5 C 1.47659 * 119.99969 * 180.02562 * 3 2 1 6 6 C 1.39633 * 120.13451 * 0.02562 * 5 3 2 7 7 C 1.38378 * 119.80437 * 179.97438 * 6 5 3 8 8 O 1.35934 * 119.96476 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00078 * 0.16094 * 8 7 6 10 10 H 1.09002 * 109.47100 * 23.89985 * 9 8 7 11 11 C 1.50700 * 109.47117 * 143.89445 * 9 8 7 12 12 H 1.08001 * 119.99800 * 25.54369 * 11 9 8 13 13 C 1.37880 * 120.00252 * 205.53162 * 11 9 8 14 14 N 1.31515 * 119.99818 * 185.07712 * 13 11 9 15 15 Si 1.86802 * 119.99732 * 5.07754 * 13 11 9 16 16 H 1.48506 * 109.46774 * 94.53188 * 15 13 11 17 17 H 1.48494 * 109.46931 * 214.52630 * 15 13 11 18 18 H 1.48496 * 109.47371 * 334.53343 * 15 13 11 19 19 C 1.53000 * 109.47527 * 263.90152 * 9 8 7 20 20 Cl 1.80295 * 109.47112 * 63.50741 * 19 9 8 21 21 C 1.38888 * 120.06991 * 359.72351 * 7 6 5 22 22 C 1.38200 * 120.27440 * 0.55682 * 21 7 6 23 23 C 1.38154 * 120.19685 * 359.43994 * 22 21 7 24 24 Cl 1.73601 * 120.03870 * 180.25665 * 23 22 21 25 25 H 1.09000 * 109.47035 * 299.99814 * 1 2 3 26 26 H 1.09005 * 109.47085 * 59.99659 * 1 2 3 27 27 H 1.08998 * 109.47106 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.09903 * 359.95878 * 6 5 3 29 29 H 0.97006 * 119.99506 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47099 * 183.51143 * 19 9 8 31 31 H 1.08995 * 109.46784 * 303.50905 * 19 9 8 32 32 H 1.08002 * 119.86387 * 180.29310 * 21 7 6 33 33 H 1.08000 * 119.89815 * 179.72226 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5382 1.2777 -0.0006 6 6 4.3014 0.1084 -0.0017 7 6 5.6829 0.1888 -0.0027 8 8 6.4291 -0.9474 -0.0043 9 6 5.7211 -2.1886 -0.0084 10 1 4.7255 -2.0376 -0.4259 11 6 6.4705 -3.1917 -0.8469 12 1 7.5369 -3.0908 -0.9849 13 6 5.7949 -4.2384 -1.4376 14 7 6.4612 -5.1689 -2.0857 15 14 3.9333 -4.3349 -1.3174 16 1 3.3267 -3.7151 -2.5230 17 1 3.5160 -5.7573 -1.2290 18 1 3.4772 -3.6089 -0.1050 19 6 5.5992 -2.7110 1.4245 20 17 4.6143 -1.5600 2.4022 21 6 6.3078 1.4292 -0.0085 22 6 5.5554 2.5884 -0.0016 23 6 4.1755 2.5212 -0.0006 24 17 3.2344 3.9800 0.0013 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.8151 -0.8559 -0.0014 29 1 5.9858 -5.9051 -2.5016 30 1 5.1145 -3.6872 1.4153 31 1 6.5927 -2.8028 1.8634 32 1 7.3862 1.4881 -0.0141 33 1 6.0476 3.5497 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233969879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:50 Heat of formation + Delta-G solvation = -117.521329 kcal Electronic energy + Delta-G solvation = -22472.509638 eV Core-core repulsion = 18743.552180 eV Total energy + Delta-G solvation = -3728.957458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81124 -40.88800 -38.85167 -37.48447 -37.22274 -36.71793 -35.21692 -33.03218 -32.26868 -30.50968 -28.70946 -27.22638 -25.50884 -24.36482 -22.40756 -21.93942 -20.04413 -18.92877 -18.59606 -17.70780 -17.46676 -17.34800 -16.88598 -16.56369 -16.02789 -15.49958 -15.08253 -14.84579 -14.73549 -14.63692 -14.50382 -13.98053 -13.74355 -13.47987 -13.29821 -12.98520 -12.90930 -12.80204 -12.59280 -12.42938 -12.10843 -11.88517 -11.83586 -11.54007 -11.24196 -11.16653 -10.99925 -10.83218 -10.24834 -9.08879 -8.49170 -6.61954 -0.54404 0.15425 1.07451 1.24693 1.33930 1.38270 1.39556 1.39762 1.61605 2.17971 2.33962 2.54596 2.88768 3.43757 3.63427 3.91907 4.04425 4.07032 4.14226 4.24142 4.29919 4.35657 4.41603 4.59024 4.65957 4.76921 4.86597 4.98174 5.11447 5.18975 5.25704 5.44997 5.91926 6.46082 6.57350 6.62194 7.05794 8.65387 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.005525 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.141087 B = 5066.668669 C = 5814.778459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.504 3.496 4 O -0.502 6.502 5 C -0.100 4.100 6 C -0.143 4.143 7 C 0.123 3.877 8 O -0.307 6.307 9 C 0.182 3.818 10 H 0.052 0.948 11 C -0.535 4.535 12 H 0.051 0.949 13 C 0.042 3.958 14 N -0.916 5.916 15 Si 0.909 3.091 16 H -0.265 1.265 17 H -0.269 1.269 18 H -0.231 1.231 19 C -0.038 4.038 20 Cl -0.209 7.209 21 C -0.106 4.106 22 C -0.070 4.070 23 C -0.035 4.035 24 Cl -0.042 7.042 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.277 0.723 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 11.831 5.514 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.349 3.651 4 O -0.391 6.391 5 C -0.102 4.102 6 C -0.162 4.162 7 C 0.076 3.924 8 O -0.220 6.220 9 C 0.127 3.873 10 H 0.069 0.931 11 C -0.572 4.572 12 H 0.070 0.930 13 C -0.160 4.160 14 N -0.552 5.552 15 Si 0.731 3.269 16 H -0.190 1.190 17 H -0.193 1.193 18 H -0.153 1.153 19 C -0.101 4.101 20 Cl -0.183 7.183 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.063 4.063 24 Cl -0.012 7.012 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.158 0.842 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.186 0.814 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.845 12.105 5.488 15.434 hybrid contribution -1.067 -0.595 -0.195 1.237 sum -8.912 11.510 5.293 15.490 Atomic orbital electron populations 1.23607 0.73976 1.05742 1.03042 1.86591 1.25626 1.32029 1.83864 1.21108 0.89029 0.81848 0.73105 1.90870 1.66874 1.35660 1.45705 1.18689 0.89694 0.93056 1.08773 1.21588 0.93544 0.98650 1.02443 1.19408 0.89735 0.88567 0.94692 1.86215 1.36025 1.12862 1.86909 1.20674 0.94098 0.80408 0.92165 0.93058 1.20775 0.96075 1.08882 1.31475 0.93023 1.25619 1.02978 0.94237 0.93188 1.69954 1.38460 1.12381 1.34452 0.86293 0.80046 0.79370 0.81228 1.19036 1.19342 1.15343 1.25719 0.97774 0.94138 0.92446 1.98679 1.75901 1.67566 1.76136 1.20965 1.02422 0.87978 1.01097 1.21103 0.89660 1.00189 0.97892 1.20945 0.92909 0.86520 1.05885 1.98379 1.72769 1.33574 1.96527 0.91268 0.91298 0.85414 0.84214 0.91285 0.87954 0.87906 0.81382 0.80021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.05 9.82 -56.26 -0.55 -11.60 16 3 C 0.50 16.43 7.89 70.31 0.55 16.99 16 4 O -0.50 -16.86 13.75 19.91 0.27 -16.59 16 5 C -0.10 -3.25 5.87 -20.09 -0.12 -3.36 16 6 C -0.14 -4.96 6.75 22.64 0.15 -4.81 16 7 C 0.12 4.22 6.03 22.46 0.14 4.35 16 8 O -0.31 -12.38 9.69 -92.80 -0.90 -13.28 16 9 C 0.18 7.73 1.70 29.85 0.05 7.79 16 10 H 0.05 2.18 2.91 -2.39 -0.01 2.17 16 11 C -0.53 -27.51 9.23 25.60 0.24 -27.28 16 12 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 13 C 0.04 2.19 5.47 84.66 0.46 2.65 16 14 N -0.92 -51.22 13.96 21.45 0.30 -50.92 16 15 Si 0.91 37.91 26.37 68.60 1.81 39.72 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.23 -8.69 5.97 99.48 0.59 -8.10 16 19 C -0.04 -1.40 5.95 71.98 0.43 -0.98 16 20 Cl -0.21 -7.08 25.78 -2.72 -0.07 -7.15 16 21 C -0.11 -2.82 9.98 22.42 0.22 -2.60 16 22 C -0.07 -1.64 9.81 22.24 0.22 -1.42 16 23 C -0.04 -1.00 6.35 22.61 0.14 -0.86 16 24 Cl -0.04 -1.13 26.01 -2.72 -0.07 -1.20 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.14 5.19 4.63 -2.91 -0.01 5.18 16 29 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 30 H 0.10 3.70 6.91 -2.39 -0.02 3.68 16 31 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -60.51 310.66 5.53 -54.98 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.05 Total: 13.75 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 3.69 Total: -7.71 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.30 Total: -50.92 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -1.18 Total: -41.47 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.81 Total: 39.72 kcal Atomic # 17 Polarization: -8.22 SS G_CDS: -0.14 Total: -8.36 kcal Total: -60.51 5.53 -54.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233969879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.537 kcal (2) G-P(sol) polarization free energy of solvation -60.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds