Wall clock time and date at job start Tue Mar 31 2020 11:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00155 * 2 1 4 4 C 1.52994 * 109.47039 * 66.04408 * 3 2 1 5 5 N 1.46899 * 109.47039 * 179.97438 * 4 3 2 6 6 C 1.46961 * 110.99839 * 46.18217 * 5 4 3 7 7 C 1.53055 * 109.36236 * 183.16593 * 6 5 4 8 8 N 1.46957 * 109.38102 * 301.63164 * 7 6 5 9 9 C 1.46902 * 110.99592 * 183.18149 * 8 7 6 10 10 C 1.46956 * 110.88162 * 59.31533 * 8 7 6 11 11 C 1.46962 * 111.00207 * 170.00507 * 5 4 3 12 12 C 1.46907 * 110.99626 * 236.04627 * 2 1 3 13 13 C 1.50704 * 109.47105 * 287.74541 * 12 2 1 14 14 C 1.37641 * 120.12384 * 104.11316 * 13 12 2 15 15 C 1.38614 * 120.24466 * 179.97438 * 14 13 12 16 16 C 1.38661 * 120.50095 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.25016 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12686 * 283.83819 * 13 12 2 19 19 C 1.41389 * 120.24578 * 359.97438 * 18 13 12 20 20 H 1.08002 * 120.00230 * 28.12217 * 19 18 13 21 21 C 1.39944 * 119.99997 * 208.12806 * 19 18 13 22 22 N 1.30820 * 120.00138 * 13.82648 * 21 19 18 23 23 Si 1.86805 * 120.00096 * 193.82786 * 21 19 18 24 24 H 1.48497 * 109.47068 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47070 * 119.99257 * 23 21 19 26 26 H 1.48500 * 109.47104 * 239.99886 * 23 21 19 27 27 H 1.08993 * 109.47366 * 55.70035 * 1 2 3 28 28 H 1.09003 * 109.47382 * 175.70041 * 1 2 3 29 29 H 1.09004 * 109.46977 * 295.69467 * 1 2 3 30 30 H 1.09003 * 109.46710 * 306.04877 * 3 2 1 31 31 H 1.08995 * 109.47340 * 186.05094 * 3 2 1 32 32 H 1.09003 * 109.46987 * 60.00638 * 4 3 2 33 33 H 1.08995 * 109.47614 * 300.00518 * 4 3 2 34 34 H 1.08995 * 109.46889 * 63.21098 * 6 5 4 35 35 H 1.08998 * 109.50475 * 303.14648 * 6 5 4 36 36 H 1.08995 * 109.48125 * 181.65249 * 7 6 5 37 37 H 1.09002 * 109.49045 * 61.61167 * 7 6 5 38 38 H 1.09000 * 109.47690 * 59.99577 * 9 8 7 39 39 H 1.08997 * 109.46843 * 180.02562 * 9 8 7 40 40 H 1.09010 * 109.47078 * 299.99820 * 9 8 7 41 41 H 1.08991 * 109.49057 * 60.64068 * 10 8 7 42 42 H 1.09003 * 109.48925 * 180.69107 * 10 8 7 43 43 H 1.08997 * 109.48985 * 56.84164 * 11 5 4 44 44 H 1.09003 * 109.48380 * 296.78246 * 11 5 4 45 45 H 1.08996 * 109.47253 * 47.74577 * 12 2 1 46 46 H 1.08996 * 109.46441 * 167.74904 * 12 2 1 47 47 H 1.07995 * 119.87528 * 0.02562 * 14 13 12 48 48 H 1.07993 * 119.75034 * 179.97438 * 15 14 13 49 49 H 1.08003 * 119.87340 * 180.02562 * 16 15 14 50 50 H 1.08003 * 120.12782 * 179.97438 * 17 16 15 51 51 H 0.97001 * 120.00108 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1585 3.4286 1.3184 6 6 1.8632 4.1065 0.0484 7 6 2.4954 5.5003 0.0582 8 7 1.9688 6.2666 1.1963 9 6 2.4958 7.6379 1.1964 10 6 2.2646 5.5886 2.4661 11 6 1.6320 4.1950 2.4565 12 6 1.9954 -0.7660 -1.1377 13 6 1.7711 -2.2371 -0.8996 14 6 0.7672 -2.9000 -1.5685 15 6 0.5590 -4.2532 -1.3518 16 6 1.3570 -4.9541 -0.4604 17 6 2.3657 -4.3117 0.2201 18 6 2.5907 -2.9395 0.0030 19 6 3.6290 -2.2704 0.6910 20 1 3.5437 -1.2149 0.9030 21 6 4.7674 -2.9759 1.0970 22 7 5.0028 -4.1698 0.6170 23 14 5.9506 -2.2128 2.3247 24 1 5.4615 -0.8651 2.7116 25 1 6.0357 -3.0742 3.5313 26 1 7.2955 -2.0921 1.7066 27 1 -0.3634 0.5791 -0.8489 28 1 -0.3634 -1.0248 -0.0770 29 1 -0.3633 0.4456 0.9261 30 1 1.5611 1.9273 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.0659 1.5015 2.1491 33 1 0.5473 2.0844 1.4265 34 1 0.7838 4.1976 -0.0724 35 1 2.2743 3.5265 -0.7779 36 1 2.2529 6.0160 -0.8709 37 1 3.5775 5.4082 0.1513 38 1 2.2052 8.1390 0.2731 39 1 2.0906 8.1827 2.0491 40 1 3.5832 7.6093 1.2675 41 1 3.3440 5.4971 2.5867 42 1 1.8541 6.1690 3.2924 43 1 1.8744 3.6792 3.3856 44 1 0.5499 4.2874 2.3632 45 1 1.4805 -0.4629 -2.0492 46 1 3.0631 -0.5736 -1.2422 47 1 0.1400 -2.3639 -2.2653 48 1 -0.2312 -4.7652 -1.8806 49 1 1.1861 -6.0083 -0.2996 50 1 2.9858 -4.8595 0.9142 51 1 5.7917 -4.6590 0.8987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235529450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:53 Heat of formation + Delta-G solvation = 42.748343 kcal Electronic energy + Delta-G solvation = -27131.968061 eV Core-core repulsion = 23645.027894 eV Total energy + Delta-G solvation = -3486.940167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.53488 -38.10155 -36.71307 -35.13836 -33.51516 -31.28145 -30.82887 -29.58184 -29.19882 -27.11199 -26.40900 -25.11173 -24.26198 -23.62049 -22.52132 -20.86439 -20.49698 -19.69367 -19.33929 -17.05455 -16.54569 -15.54856 -15.29833 -15.21835 -15.12727 -15.03184 -14.81903 -14.46464 -14.35512 -13.81699 -13.56573 -13.45489 -13.02426 -12.74119 -12.67191 -12.50295 -12.21927 -12.10433 -11.66659 -11.53116 -11.46516 -11.40755 -11.18397 -11.10935 -10.98217 -10.88463 -10.78790 -10.69834 -10.62543 -10.35514 -10.26952 -9.43769 -9.22603 -9.10909 -8.62659 -8.29504 -7.64354 -7.29279 -7.20374 -6.63470 -4.23428 2.84150 3.01438 3.15345 3.22746 3.30966 3.69171 3.80877 4.03910 4.61227 4.73006 4.80376 4.82207 4.94425 5.12683 5.13840 5.24765 5.31627 5.33211 5.35201 5.47424 5.57006 5.61063 5.69830 5.75790 5.79530 5.80942 5.84809 5.86738 5.89637 6.08833 6.15542 6.25275 6.29154 6.36285 6.45560 6.54113 6.59028 6.73422 6.75922 6.90488 7.05507 7.08288 7.20518 7.34518 7.45640 7.66268 7.69197 7.77916 8.01424 8.15183 8.24296 8.41328 8.78257 9.04222 9.10619 10.31810 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.003392 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.862759 B = 8252.316750 C = 9731.069987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.062 3.938 5 N -0.539 5.539 6 C 0.051 3.949 7 C 0.056 3.944 8 N -0.547 5.547 9 C 0.025 3.975 10 C 0.057 3.943 11 C 0.058 3.942 12 C 0.129 3.871 13 C -0.190 4.190 14 C -0.088 4.088 15 C -0.245 4.245 16 C -0.108 4.108 17 C -0.161 4.161 18 C 0.132 3.868 19 C -0.445 4.445 20 H 0.092 0.908 21 C 0.072 3.928 22 N -0.802 5.802 23 Si 0.902 3.098 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.278 1.278 27 H 0.011 0.989 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.025 0.975 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.015 0.985 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.115 0.885 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 17.194 1.516 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.248 5.248 3 C -0.073 4.073 4 C -0.066 4.066 5 N -0.265 5.265 6 C -0.077 4.077 7 C -0.072 4.072 8 N -0.272 5.272 9 C -0.123 4.123 10 C -0.071 4.071 11 C -0.070 4.070 12 C 0.003 3.997 13 C -0.192 4.192 14 C -0.107 4.107 15 C -0.264 4.264 16 C -0.127 4.127 17 C -0.180 4.180 18 C 0.129 3.871 19 C -0.475 4.475 20 H 0.110 0.890 21 C -0.144 4.144 22 N -0.429 5.429 23 Si 0.727 3.273 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.203 1.203 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.033 0.967 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.133 0.867 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.597 16.796 1.955 17.288 hybrid contribution 0.303 0.524 -0.223 0.645 sum -3.294 17.320 1.732 17.716 Atomic orbital electron populations 1.22351 0.88501 1.02160 0.98937 1.61877 1.06819 1.11105 1.45007 1.22207 1.01003 0.89060 0.95018 1.22122 0.97313 0.87399 0.99759 1.62178 1.59392 1.02428 1.02464 1.22261 0.98792 0.93633 0.93014 1.22195 0.97724 0.93563 0.93682 1.62172 1.59295 1.02525 1.03237 1.22338 0.97554 0.89784 1.02605 1.22171 0.99160 0.94247 0.91525 1.22126 0.97337 0.92945 0.94587 1.20613 0.99170 0.91516 0.88440 1.19479 1.02588 0.93630 1.03526 1.20366 0.97102 0.94300 0.98963 1.20291 1.04423 0.94747 1.06975 1.20670 0.96766 0.97312 0.97909 1.21342 0.98265 0.95997 1.02413 1.17378 0.90276 0.91224 0.88230 1.19772 0.99888 0.97522 1.30273 0.89031 1.25952 0.98846 0.94442 0.95161 1.69835 1.25388 1.11819 1.35838 0.86349 0.79660 0.80617 0.80648 1.18161 1.20043 1.20328 0.97062 0.90763 0.92506 0.95676 0.90113 0.89445 0.94868 0.94284 0.89551 0.90507 0.93868 0.91431 0.91474 0.95600 0.93886 0.90461 0.90101 0.94156 0.96697 0.90775 0.90048 0.89900 0.89781 0.86720 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.11 60.07 0.55 1.02 16 2 N -0.52 -9.57 4.15 -244.37 -1.01 -10.58 16 3 C 0.06 0.86 4.21 -3.83 -0.02 0.84 16 4 C 0.06 0.87 5.20 -3.83 -0.02 0.85 16 5 N -0.54 -6.93 4.86 -234.46 -1.14 -8.07 16 6 C 0.05 0.60 4.93 -3.76 -0.02 0.58 16 7 C 0.06 0.59 5.62 -3.76 -0.02 0.56 16 8 N -0.55 -5.60 4.97 -242.75 -1.21 -6.81 16 9 C 0.03 0.20 9.60 60.07 0.58 0.78 16 10 C 0.06 0.57 5.62 -3.77 -0.02 0.55 16 11 C 0.06 0.66 5.58 -3.76 -0.02 0.63 16 12 C 0.13 2.60 4.30 -4.97 -0.02 2.57 16 13 C -0.19 -4.45 4.77 -103.91 -0.50 -4.94 16 14 C -0.09 -1.98 8.88 -39.66 -0.35 -2.33 16 15 C -0.24 -5.56 10.05 -39.29 -0.39 -5.96 16 16 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 17 C -0.16 -4.21 8.66 -38.87 -0.34 -4.54 16 18 C 0.13 3.43 5.54 -106.83 -0.59 2.84 16 19 C -0.44 -11.49 8.17 -37.74 -0.31 -11.80 16 20 H 0.09 2.32 6.76 -52.49 -0.35 1.97 16 21 C 0.07 1.81 5.19 -17.34 -0.09 1.72 16 22 N -0.80 -20.88 10.99 55.55 0.61 -20.27 16 23 Si 0.90 19.03 29.58 -169.99 -5.03 14.01 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 27 H 0.01 0.17 8.09 -51.93 -0.42 -0.25 16 28 H 0.07 1.35 6.70 -51.93 -0.35 1.01 16 29 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 30 H 0.03 0.36 6.20 -51.93 -0.32 0.04 16 31 H 0.08 1.34 7.86 -51.93 -0.41 0.93 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.46 6.58 -51.93 -0.34 0.12 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.01 6.00 -51.93 -0.31 0.70 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 40 H 0.03 0.20 8.14 -51.92 -0.42 -0.22 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.01 0.28 7.86 -51.93 -0.41 -0.13 16 46 H 0.07 1.56 7.25 -51.93 -0.38 1.19 16 47 H 0.08 1.62 8.00 -52.49 -0.42 1.20 16 48 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.08 1.82 8.06 -52.48 -0.42 1.39 16 50 H 0.11 3.11 6.31 -52.48 -0.33 2.78 16 51 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -27.35 389.57 -12.91 -40.25 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -9.02 Total: 5.18 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.98 Total: -19.59 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -2.75 Total: -45.72 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.35 -12.91 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.002 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds