Wall clock time and date at job start Tue Mar 31 2020 11:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00155 * 2 1 4 4 C 1.52994 * 109.47039 * 66.04408 * 3 2 1 5 5 N 1.46899 * 109.47039 * 179.97438 * 4 3 2 6 6 C 1.46961 * 110.99839 * 46.18217 * 5 4 3 7 7 C 1.53055 * 109.36236 * 183.16593 * 6 5 4 8 8 N 1.46957 * 109.38102 * 301.63164 * 7 6 5 9 9 C 1.46902 * 110.99592 * 183.18149 * 8 7 6 10 10 C 1.46956 * 110.88162 * 59.31533 * 8 7 6 11 11 C 1.46962 * 111.00207 * 170.00507 * 5 4 3 12 12 C 1.46907 * 110.99626 * 236.04627 * 2 1 3 13 13 C 1.50704 * 109.47105 * 287.74541 * 12 2 1 14 14 C 1.37641 * 120.12384 * 104.11316 * 13 12 2 15 15 C 1.38614 * 120.24466 * 179.97438 * 14 13 12 16 16 C 1.38661 * 120.50095 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.25016 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12686 * 283.83819 * 13 12 2 19 19 C 1.41389 * 120.24578 * 359.97438 * 18 13 12 20 20 H 1.08002 * 120.00230 * 28.12217 * 19 18 13 21 21 C 1.39944 * 119.99997 * 208.12806 * 19 18 13 22 22 N 1.30820 * 120.00138 * 13.82648 * 21 19 18 23 23 Si 1.86805 * 120.00096 * 193.82786 * 21 19 18 24 24 H 1.48497 * 109.47068 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47070 * 119.99257 * 23 21 19 26 26 H 1.48500 * 109.47104 * 239.99886 * 23 21 19 27 27 H 1.08993 * 109.47366 * 55.70035 * 1 2 3 28 28 H 1.09003 * 109.47382 * 175.70041 * 1 2 3 29 29 H 1.09004 * 109.46977 * 295.69467 * 1 2 3 30 30 H 1.09003 * 109.46710 * 306.04877 * 3 2 1 31 31 H 1.08995 * 109.47340 * 186.05094 * 3 2 1 32 32 H 1.09003 * 109.46987 * 60.00638 * 4 3 2 33 33 H 1.08995 * 109.47614 * 300.00518 * 4 3 2 34 34 H 1.08995 * 109.46889 * 63.21098 * 6 5 4 35 35 H 1.08998 * 109.50475 * 303.14648 * 6 5 4 36 36 H 1.08995 * 109.48125 * 181.65249 * 7 6 5 37 37 H 1.09002 * 109.49045 * 61.61167 * 7 6 5 38 38 H 1.09000 * 109.47690 * 59.99577 * 9 8 7 39 39 H 1.08997 * 109.46843 * 180.02562 * 9 8 7 40 40 H 1.09010 * 109.47078 * 299.99820 * 9 8 7 41 41 H 1.08991 * 109.49057 * 60.64068 * 10 8 7 42 42 H 1.09003 * 109.48925 * 180.69107 * 10 8 7 43 43 H 1.08997 * 109.48985 * 56.84164 * 11 5 4 44 44 H 1.09003 * 109.48380 * 296.78246 * 11 5 4 45 45 H 1.08996 * 109.47253 * 47.74577 * 12 2 1 46 46 H 1.08996 * 109.46441 * 167.74904 * 12 2 1 47 47 H 1.07995 * 119.87528 * 0.02562 * 14 13 12 48 48 H 1.07993 * 119.75034 * 179.97438 * 15 14 13 49 49 H 1.08003 * 119.87340 * 180.02562 * 16 15 14 50 50 H 1.08003 * 120.12782 * 179.97438 * 17 16 15 51 51 H 0.97001 * 120.00108 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1585 3.4286 1.3184 6 6 1.8632 4.1065 0.0484 7 6 2.4954 5.5003 0.0582 8 7 1.9688 6.2666 1.1963 9 6 2.4958 7.6379 1.1964 10 6 2.2646 5.5886 2.4661 11 6 1.6320 4.1950 2.4565 12 6 1.9954 -0.7660 -1.1377 13 6 1.7711 -2.2371 -0.8996 14 6 0.7672 -2.9000 -1.5685 15 6 0.5590 -4.2532 -1.3518 16 6 1.3570 -4.9541 -0.4604 17 6 2.3657 -4.3117 0.2201 18 6 2.5907 -2.9395 0.0030 19 6 3.6290 -2.2704 0.6910 20 1 3.5437 -1.2149 0.9030 21 6 4.7674 -2.9759 1.0970 22 7 5.0028 -4.1698 0.6170 23 14 5.9506 -2.2128 2.3247 24 1 5.4615 -0.8651 2.7116 25 1 6.0357 -3.0742 3.5313 26 1 7.2955 -2.0921 1.7066 27 1 -0.3634 0.5791 -0.8489 28 1 -0.3634 -1.0248 -0.0770 29 1 -0.3633 0.4456 0.9261 30 1 1.5611 1.9273 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.0659 1.5015 2.1491 33 1 0.5473 2.0844 1.4265 34 1 0.7838 4.1976 -0.0724 35 1 2.2743 3.5265 -0.7779 36 1 2.2529 6.0160 -0.8709 37 1 3.5775 5.4082 0.1513 38 1 2.2052 8.1390 0.2731 39 1 2.0906 8.1827 2.0491 40 1 3.5832 7.6093 1.2675 41 1 3.3440 5.4971 2.5867 42 1 1.8541 6.1690 3.2924 43 1 1.8744 3.6792 3.3856 44 1 0.5499 4.2874 2.3632 45 1 1.4805 -0.4629 -2.0492 46 1 3.0631 -0.5736 -1.2422 47 1 0.1400 -2.3639 -2.2653 48 1 -0.2312 -4.7652 -1.8806 49 1 1.1861 -6.0083 -0.2996 50 1 2.9858 -4.8595 0.9142 51 1 5.7917 -4.6590 0.8987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235529450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:51 Heat of formation + Delta-G solvation = 26.189941 kcal Electronic energy + Delta-G solvation = -27132.686088 eV Core-core repulsion = 23645.027894 eV Total energy + Delta-G solvation = -3487.658193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.49420 -39.73177 -38.08760 -36.22222 -35.39787 -32.58857 -31.94999 -31.30631 -30.51852 -28.22162 -27.91371 -26.84288 -25.26348 -24.57530 -23.75584 -22.73525 -21.67916 -21.08294 -20.64885 -18.94588 -17.55154 -17.18529 -16.56582 -16.46889 -16.15205 -16.03223 -15.89025 -15.80280 -15.66426 -15.40049 -14.93596 -14.65401 -14.50482 -14.31266 -13.90786 -13.45884 -13.34221 -13.32352 -13.03363 -12.98732 -12.86184 -12.71629 -12.55670 -12.46250 -12.41609 -12.31736 -12.19242 -12.01001 -11.83842 -11.71208 -11.63888 -11.26916 -11.02844 -10.98834 -9.43481 -9.26377 -9.19084 -9.12579 -8.96329 -8.51026 -6.18739 1.03645 1.16832 1.41160 1.54991 1.55950 2.27004 2.71570 2.87411 2.97176 3.37948 3.87217 3.92747 3.95000 4.04015 4.11205 4.23299 4.32488 4.35029 4.38669 4.43304 4.48537 4.54593 4.58957 4.61547 4.62565 4.67451 4.69458 4.77950 4.81681 4.87469 4.88556 4.95133 4.97888 5.00387 5.04814 5.12425 5.13058 5.18294 5.31441 5.44557 5.59620 5.85004 5.92072 5.95409 6.06647 6.12553 6.15032 6.22381 6.28338 6.37045 6.40537 6.54128 6.85838 7.12598 7.19629 8.46301 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.003392 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.862759 B = 8252.316750 C = 9731.069987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.543 5.543 3 C 0.064 3.936 4 C 0.073 3.927 5 N -0.549 5.549 6 C 0.053 3.947 7 C 0.060 3.940 8 N -0.558 5.558 9 C 0.026 3.974 10 C 0.061 3.939 11 C 0.058 3.942 12 C 0.138 3.862 13 C -0.192 4.192 14 C -0.092 4.092 15 C -0.243 4.243 16 C -0.116 4.116 17 C -0.191 4.191 18 C 0.102 3.898 19 C -0.467 4.467 20 H 0.088 0.912 21 C 0.032 3.968 22 N -0.837 5.837 23 Si 0.969 3.031 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.039 0.961 45 H 0.032 0.968 46 H 0.057 0.943 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.102 0.898 50 H 0.093 0.907 51 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 19.229 1.179 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.267 5.267 3 C -0.064 4.064 4 C -0.054 4.054 5 N -0.275 5.275 6 C -0.075 4.075 7 C -0.068 4.068 8 N -0.283 5.283 9 C -0.122 4.122 10 C -0.067 4.067 11 C -0.070 4.070 12 C 0.011 3.989 13 C -0.194 4.194 14 C -0.111 4.111 15 C -0.263 4.263 16 C -0.135 4.135 17 C -0.211 4.211 18 C 0.099 3.901 19 C -0.497 4.497 20 H 0.106 0.894 21 C -0.181 4.181 22 N -0.464 5.464 23 Si 0.791 3.209 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.076 0.924 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.120 0.880 50 H 0.111 0.889 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.605 18.843 1.614 19.464 hybrid contribution 0.499 -0.100 -0.190 0.543 sum -4.106 18.742 1.424 19.240 Atomic orbital electron populations 1.22302 0.87252 1.01395 1.00396 1.61741 1.08037 1.12599 1.44350 1.22129 1.00011 0.87874 0.96373 1.21902 0.97326 0.88072 0.98147 1.62172 1.59694 1.02033 1.03620 1.22261 0.98652 0.94315 0.92259 1.22168 0.97015 0.93041 0.94624 1.62208 1.59592 1.03436 1.03032 1.22391 0.97539 0.88617 1.03649 1.22158 0.98578 0.93761 0.92252 1.22175 0.97258 0.93534 0.94029 1.20437 0.98546 0.90078 0.89841 1.19862 1.01850 0.95338 1.02303 1.20711 0.96945 0.94453 0.98964 1.20683 1.04379 0.95110 1.06081 1.20925 0.96320 0.98406 0.97843 1.21316 0.99578 0.96579 1.03640 1.17719 0.91318 0.91632 0.89411 1.19882 1.00674 0.97486 1.31630 0.89403 1.26681 1.00215 0.94791 0.96397 1.69902 1.26286 1.13103 1.37127 0.85343 0.77619 0.79552 0.78341 1.18194 1.19559 1.19596 0.95254 0.92621 0.91248 0.94030 0.91661 0.91403 0.94401 0.94560 0.89806 0.88989 0.94742 0.90507 0.90382 0.95644 0.94737 0.88706 0.89912 0.94313 0.94952 0.92433 0.87067 0.86949 0.87987 0.88860 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 9.11 127.69 1.16 2.25 16 2 N -0.54 -19.46 4.15 -927.05 -3.84 -23.30 16 3 C 0.06 1.93 4.21 86.30 0.36 2.30 16 4 C 0.07 2.03 5.20 86.30 0.45 2.48 16 5 N -0.55 -13.58 4.86 -895.71 -4.35 -17.93 16 6 C 0.05 1.16 4.93 86.31 0.43 1.59 16 7 C 0.06 1.14 5.62 86.31 0.49 1.62 16 8 N -0.56 -10.27 4.97 -921.93 -4.58 -14.85 16 9 C 0.03 0.35 9.60 127.69 1.23 1.58 16 10 C 0.06 1.12 5.62 86.31 0.49 1.60 16 11 C 0.06 1.23 5.58 86.31 0.48 1.71 16 12 C 0.14 5.48 4.30 85.56 0.37 5.85 16 13 C -0.19 -8.93 4.77 -19.40 -0.09 -9.02 16 14 C -0.09 -3.96 8.88 22.22 0.20 -3.76 16 15 C -0.24 -10.64 10.05 22.46 0.23 -10.41 16 16 C -0.12 -5.57 10.02 22.22 0.22 -5.34 16 17 C -0.19 -10.33 8.66 22.73 0.20 -10.13 16 18 C 0.10 5.43 5.54 -21.29 -0.12 5.32 16 19 C -0.47 -24.86 8.17 23.46 0.19 -24.67 16 20 H 0.09 4.60 6.76 -2.91 -0.02 4.58 16 21 C 0.03 1.65 5.19 85.26 0.44 2.09 16 22 N -0.84 -45.00 10.99 21.83 0.24 -44.76 16 23 Si 0.97 39.96 29.58 68.60 2.03 41.99 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 27 H 0.03 0.81 8.09 -2.39 -0.02 0.79 16 28 H 0.05 1.95 6.70 -2.39 -0.02 1.93 16 29 H 0.07 1.98 6.68 -2.39 -0.02 1.96 16 30 H 0.04 1.13 6.20 -2.39 -0.01 1.11 16 31 H 0.06 2.17 7.86 -2.39 -0.02 2.15 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.00 6.58 -2.39 -0.02 0.99 16 34 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.84 6.00 -2.39 -0.01 1.83 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.89 8.13 -2.39 -0.02 0.87 16 40 H 0.02 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.03 1.16 7.86 -2.39 -0.02 1.14 16 46 H 0.06 2.46 7.25 -2.39 -0.02 2.44 16 47 H 0.11 4.08 8.00 -2.91 -0.02 4.06 16 48 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 49 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 50 H 0.09 5.33 6.31 -2.91 -0.02 5.31 16 51 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -59.37 389.57 -2.91 -62.28 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.88 Total: 31.54 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 6.71 Total: -34.97 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -12.54 Total: -100.85 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -59.37 -2.91 -62.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.474 kcal (2) G-P(sol) polarization free energy of solvation -59.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds