Wall clock time and date at job start Tue Mar 31 2020 11:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 111.00001 * 2 1 4 4 C 1.50693 * 109.47025 * 293.95280 * 3 2 1 5 5 C 1.38287 * 119.92556 * 90.00175 * 4 3 2 6 6 C 1.38101 * 120.07837 * 180.02562 * 5 4 3 7 7 C 1.38919 * 119.92050 * 359.97438 * 6 5 4 8 8 N 1.39678 * 120.06932 * 179.97438 * 7 6 5 9 9 C 1.46492 * 120.00377 * 359.97438 * 8 7 6 10 10 C 1.46500 * 119.99410 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.47299 * 269.99408 * 10 8 7 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.38903 * 119.85218 * 0.25078 * 7 6 5 20 20 C 1.38105 * 119.92643 * 359.49802 * 19 7 6 21 21 C 1.46895 * 111.00161 * 123.95315 * 2 1 3 22 22 C 1.53001 * 109.47043 * 66.04428 * 21 2 1 23 23 H 1.08998 * 110.37268 * 297.35509 * 22 21 2 24 24 C 1.54386 * 110.41244 * 174.99890 * 22 21 2 25 25 C 1.54261 * 105.06005 * 217.36972 * 24 22 21 26 26 C 1.54372 * 105.06142 * 0.02562 * 25 24 22 27 27 N 1.48558 * 104.59886 * 23.84825 * 26 25 24 28 28 H 1.09000 * 109.47141 * 60.00162 * 1 2 3 29 29 H 1.09005 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47338 * 299.99847 * 1 2 3 31 31 H 1.08996 * 109.46754 * 173.95077 * 3 2 1 32 32 H 1.08998 * 109.46953 * 53.95312 * 3 2 1 33 33 H 1.08006 * 119.96064 * 0.04145 * 5 4 3 34 34 H 1.07998 * 120.04131 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.46823 * 270.00079 * 9 8 7 36 36 H 1.09003 * 109.47468 * 30.00123 * 9 8 7 37 37 H 1.08998 * 109.47406 * 150.00191 * 9 8 7 38 38 H 1.09004 * 109.47078 * 150.00170 * 10 8 7 39 39 H 1.08993 * 109.47364 * 29.99941 * 10 8 7 40 40 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 41 41 H 1.08008 * 120.03612 * 179.72824 * 19 7 6 42 42 H 1.07998 * 119.96765 * 180.24902 * 20 19 7 43 43 H 1.09001 * 109.47451 * 186.04638 * 21 2 1 44 44 H 1.09006 * 109.47527 * 306.05192 * 21 2 1 45 45 H 1.08996 * 110.32452 * 336.26775 * 24 22 21 46 46 H 1.08999 * 110.31962 * 98.37695 * 24 22 21 47 47 H 1.09000 * 110.32210 * 118.90188 * 25 24 22 48 48 H 1.09001 * 110.32303 * 240.99951 * 25 24 22 49 49 H 1.09001 * 110.41137 * 142.63414 * 26 25 24 50 50 H 1.09005 * 110.41058 * 264.95180 * 26 25 24 51 51 H 1.00903 * 111.00167 * 200.95666 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.4503 2.7490 -1.4062 6 6 0.1184 3.3689 -2.5948 7 6 0.9784 3.2873 -3.6827 8 7 0.6455 3.9126 -4.8865 9 6 -0.6119 4.6552 -5.0030 10 6 1.5540 3.8260 -6.0325 11 6 2.5237 4.9789 -5.9932 12 1 2.4690 5.7035 -5.1942 13 6 3.4807 5.1088 -6.9772 14 7 3.5507 4.2235 -7.9472 15 14 4.6831 6.5375 -6.9281 16 1 4.1180 7.6860 -7.6810 17 1 4.9187 6.9379 -5.5177 18 1 5.9683 6.1243 -7.5466 19 6 2.1673 2.5775 -3.5724 20 6 2.4955 1.9643 -2.3793 21 6 1.9954 -0.7659 1.1375 22 6 1.6314 -2.2426 0.9703 23 1 0.5489 -2.3697 0.9774 24 6 2.2801 -3.0870 2.0882 25 6 2.6947 -4.4063 1.4046 26 6 2.2623 -4.2477 -0.0688 27 7 2.2110 -2.7793 -0.2881 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.0796 1.3444 0.1083 32 1 1.5610 1.9274 0.8309 33 1 -0.2176 2.8126 -0.5598 34 1 -0.8087 3.9165 -2.6785 35 1 -1.3998 3.9839 -5.3446 36 1 -0.8819 5.0674 -4.0307 37 1 -0.4896 5.4666 -5.7204 38 1 0.9778 3.8673 -6.9569 39 1 2.1047 2.8864 -5.9894 40 1 2.9265 3.4814 -7.9727 41 1 2.8361 2.5085 -4.4177 42 1 3.4217 1.4157 -2.2916 43 1 3.0797 -0.6611 1.1756 44 1 1.5610 -0.3873 2.0628 45 1 3.1559 -2.5764 2.4885 46 1 1.5595 -3.2807 2.8827 47 1 3.7741 -4.5433 1.4695 48 1 2.1785 -5.2492 1.8641 49 1 2.9963 -4.7058 -0.7318 50 1 1.2794 -4.6920 -0.2264 51 1 1.6287 -2.5521 -1.0801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236120779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:33 Heat of formation + Delta-G solvation = 37.783963 kcal Electronic energy + Delta-G solvation = -26462.238680 eV Core-core repulsion = 22975.083241 eV Total energy + Delta-G solvation = -3487.155439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.43370 -38.82827 -37.03131 -35.36069 -32.94562 -31.04348 -30.45611 -30.41035 -29.36664 -27.55717 -27.11849 -25.81048 -24.23209 -22.86944 -21.90624 -21.48809 -20.92700 -20.16942 -19.63491 -17.07684 -17.05371 -16.53177 -15.78825 -15.53497 -15.29828 -14.88526 -14.66728 -14.20138 -13.95224 -13.81038 -13.75760 -13.17891 -13.13261 -13.06168 -12.88413 -12.27742 -12.24238 -12.05953 -11.93453 -11.89993 -11.64931 -11.50247 -11.46719 -11.41679 -11.30017 -11.27493 -10.93941 -10.74563 -10.65140 -10.50468 -10.15342 -9.96783 -9.49594 -8.66689 -8.59032 -8.44008 -8.28558 -8.20257 -6.58997 -6.23461 -4.17049 2.09446 2.19958 3.40336 3.44860 3.60719 3.87783 4.08948 4.10117 4.47996 4.50335 4.53173 4.65146 4.77944 4.88681 5.09151 5.14750 5.24905 5.28848 5.30256 5.33515 5.40844 5.46119 5.52603 5.54513 5.57085 5.66396 5.67720 5.71673 5.76156 5.84355 5.85660 5.91912 5.97323 5.99896 6.04819 6.22274 6.35509 6.40542 6.59707 6.63926 6.82565 6.90080 7.00914 7.06965 7.12369 7.19328 7.26644 7.33937 7.57457 7.98818 8.05896 8.38740 8.52499 8.76251 9.53547 10.93155 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.002544 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.189303 B =11003.029211 C =11655.659461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.528 5.528 3 C 0.112 3.888 4 C -0.163 4.163 5 C -0.068 4.068 6 C -0.222 4.222 7 C 0.240 3.760 8 N -0.613 5.613 9 C 0.100 3.900 10 C 0.240 3.760 11 C -0.610 4.610 12 H 0.053 0.947 13 C 0.020 3.980 14 N -0.910 5.910 15 Si 1.072 2.928 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.283 1.283 19 C -0.188 4.188 20 C -0.048 4.048 21 C 0.069 3.931 22 C 0.071 3.929 23 H 0.045 0.955 24 C -0.121 4.121 25 C -0.123 4.123 26 C 0.032 3.968 27 N -0.646 5.646 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.026 0.974 40 H 0.268 0.732 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.034 0.966 51 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 -12.780 19.325 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.252 5.252 3 C -0.014 4.014 4 C -0.166 4.166 5 C -0.087 4.087 6 C -0.245 4.245 7 C 0.134 3.866 8 N -0.319 5.319 9 C -0.044 4.044 10 C 0.119 3.881 11 C -0.649 4.649 12 H 0.072 0.928 13 C -0.185 4.185 14 N -0.546 5.546 15 Si 0.900 3.100 16 H -0.215 1.215 17 H -0.214 1.214 18 H -0.208 1.208 19 C -0.211 4.211 20 C -0.068 4.068 21 C -0.059 4.059 22 C -0.040 4.040 23 H 0.063 0.937 24 C -0.160 4.160 25 C -0.162 4.162 26 C -0.098 4.098 27 N -0.276 5.276 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.053 0.947 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.391 -12.051 17.997 22.100 hybrid contribution -2.677 -0.453 1.391 3.051 sum -7.069 -12.504 19.388 24.129 Atomic orbital electron populations 1.22466 0.88148 1.01073 1.01050 1.61976 1.07261 1.13841 1.42114 1.20822 0.99596 0.86807 0.94220 1.19129 0.97003 1.04671 0.95767 1.20507 0.95544 0.96521 0.96154 1.20500 1.01581 1.08768 0.93613 1.17931 0.92695 0.90153 0.85857 1.46846 1.20708 1.53564 1.10773 1.21457 0.85880 0.95766 1.01326 1.19338 0.88423 0.97524 0.82797 1.22406 1.17665 1.11790 1.12998 0.92845 1.25825 0.98384 1.01768 0.92485 1.70794 1.38091 1.13279 1.32420 0.83496 0.76122 0.74735 0.75659 1.21463 1.21410 1.20847 1.20846 0.97751 1.03280 0.99174 1.20641 0.98101 0.96316 0.91720 1.22117 1.00765 0.91911 0.91137 1.22468 0.96378 0.94301 0.90806 0.93677 1.22320 1.00732 0.95767 0.97139 1.22265 1.01709 0.97146 0.95040 1.22916 0.99686 0.90394 0.96788 1.63557 1.52729 1.06902 1.04400 0.90454 0.92379 0.96263 0.90630 0.95140 0.87797 0.87039 0.94682 0.92578 0.91537 0.96370 0.95612 0.92202 0.85454 0.86884 0.90098 0.95108 0.90920 0.91688 0.91097 0.91738 0.90287 0.94734 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.94 60.06 0.54 0.77 16 2 N -0.53 -6.22 4.62 -244.38 -1.13 -7.35 16 3 C 0.11 1.44 5.12 -4.98 -0.03 1.41 16 4 C -0.16 -2.54 4.89 -104.59 -0.51 -3.05 16 5 C -0.07 -1.06 7.95 -39.61 -0.32 -1.37 16 6 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 7 C 0.24 4.95 6.55 -83.78 -0.55 4.40 16 8 N -0.61 -13.40 2.99 -181.00 -0.54 -13.94 16 9 C 0.10 1.79 10.19 59.84 0.61 2.40 16 10 C 0.24 6.06 4.23 -5.19 -0.02 6.04 16 11 C -0.61 -16.99 9.39 -34.44 -0.32 -17.32 16 12 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 14 N -0.91 -27.05 13.65 55.43 0.76 -26.30 16 15 Si 1.07 25.24 29.90 -169.99 -5.08 20.16 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.19 -3.90 9.21 -39.38 -0.36 -4.26 16 20 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 21 C 0.07 0.69 4.58 -3.83 -0.02 0.68 16 22 C 0.07 0.65 2.95 -66.05 -0.19 0.46 16 23 H 0.05 0.42 6.66 -51.93 -0.35 0.07 16 24 C -0.12 -0.93 6.55 -25.35 -0.17 -1.10 16 25 C -0.12 -0.92 7.00 -25.35 -0.18 -1.10 16 26 C 0.03 0.27 7.47 -2.19 -0.02 0.25 16 27 N -0.65 -6.69 7.15 -102.73 -0.73 -7.43 16 28 H 0.08 0.96 6.16 -51.93 -0.32 0.64 16 29 H 0.06 0.57 6.37 -51.93 -0.33 0.24 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 32 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.10 1.37 8.03 -52.48 -0.42 0.95 16 34 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 37 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 38 H 0.02 0.48 7.94 -51.93 -0.41 0.07 16 39 H 0.03 0.68 6.05 -51.93 -0.31 0.37 16 40 H 0.27 7.88 7.22 -40.82 -0.29 7.58 16 41 H 0.13 2.92 6.14 -52.48 -0.32 2.60 16 42 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 44 H 0.03 0.29 8.12 -51.93 -0.42 -0.14 16 45 H 0.07 0.56 7.82 -51.93 -0.41 0.16 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.35 3.78 8.92 -39.29 -0.35 3.43 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -29.85 395.52 -11.98 -41.82 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.83 Total: 3.88 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -2.38 Total: -16.81 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -1.65 Total: -55.01 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.85 -11.98 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236120779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.607 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds