Wall clock time and date at job start Tue Mar 31 2020 11:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 111.00001 * 2 1 4 4 C 1.50693 * 109.47025 * 293.95280 * 3 2 1 5 5 C 1.38287 * 119.92556 * 90.00175 * 4 3 2 6 6 C 1.38101 * 120.07837 * 180.02562 * 5 4 3 7 7 C 1.38919 * 119.92050 * 359.97438 * 6 5 4 8 8 N 1.39678 * 120.06932 * 179.97438 * 7 6 5 9 9 C 1.46492 * 120.00377 * 359.97438 * 8 7 6 10 10 C 1.46500 * 119.99410 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.47299 * 269.99408 * 10 8 7 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.38903 * 119.85218 * 0.25078 * 7 6 5 20 20 C 1.38105 * 119.92643 * 359.49802 * 19 7 6 21 21 C 1.46895 * 111.00161 * 123.95315 * 2 1 3 22 22 C 1.53001 * 109.47043 * 66.04428 * 21 2 1 23 23 H 1.08998 * 110.37268 * 297.35509 * 22 21 2 24 24 C 1.54386 * 110.41244 * 174.99890 * 22 21 2 25 25 C 1.54261 * 105.06005 * 217.36972 * 24 22 21 26 26 C 1.54372 * 105.06142 * 0.02562 * 25 24 22 27 27 N 1.48558 * 104.59886 * 23.84825 * 26 25 24 28 28 H 1.09000 * 109.47141 * 60.00162 * 1 2 3 29 29 H 1.09005 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47338 * 299.99847 * 1 2 3 31 31 H 1.08996 * 109.46754 * 173.95077 * 3 2 1 32 32 H 1.08998 * 109.46953 * 53.95312 * 3 2 1 33 33 H 1.08006 * 119.96064 * 0.04145 * 5 4 3 34 34 H 1.07998 * 120.04131 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.46823 * 270.00079 * 9 8 7 36 36 H 1.09003 * 109.47468 * 30.00123 * 9 8 7 37 37 H 1.08998 * 109.47406 * 150.00191 * 9 8 7 38 38 H 1.09004 * 109.47078 * 150.00170 * 10 8 7 39 39 H 1.08993 * 109.47364 * 29.99941 * 10 8 7 40 40 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 41 41 H 1.08008 * 120.03612 * 179.72824 * 19 7 6 42 42 H 1.07998 * 119.96765 * 180.24902 * 20 19 7 43 43 H 1.09001 * 109.47451 * 186.04638 * 21 2 1 44 44 H 1.09006 * 109.47527 * 306.05192 * 21 2 1 45 45 H 1.08996 * 110.32452 * 336.26775 * 24 22 21 46 46 H 1.08999 * 110.31962 * 98.37695 * 24 22 21 47 47 H 1.09000 * 110.32210 * 118.90188 * 25 24 22 48 48 H 1.09001 * 110.32303 * 240.99951 * 25 24 22 49 49 H 1.09001 * 110.41137 * 142.63414 * 26 25 24 50 50 H 1.09005 * 110.41058 * 264.95180 * 26 25 24 51 51 H 1.00903 * 111.00167 * 200.95666 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.4503 2.7490 -1.4062 6 6 0.1184 3.3689 -2.5948 7 6 0.9784 3.2873 -3.6827 8 7 0.6455 3.9126 -4.8865 9 6 -0.6119 4.6552 -5.0030 10 6 1.5540 3.8260 -6.0325 11 6 2.5237 4.9789 -5.9932 12 1 2.4690 5.7035 -5.1942 13 6 3.4807 5.1088 -6.9772 14 7 3.5507 4.2235 -7.9472 15 14 4.6831 6.5375 -6.9281 16 1 4.1180 7.6860 -7.6810 17 1 4.9187 6.9379 -5.5177 18 1 5.9683 6.1243 -7.5466 19 6 2.1673 2.5775 -3.5724 20 6 2.4955 1.9643 -2.3793 21 6 1.9954 -0.7659 1.1375 22 6 1.6314 -2.2426 0.9703 23 1 0.5489 -2.3697 0.9774 24 6 2.2801 -3.0870 2.0882 25 6 2.6947 -4.4063 1.4046 26 6 2.2623 -4.2477 -0.0688 27 7 2.2110 -2.7793 -0.2881 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.0796 1.3444 0.1083 32 1 1.5610 1.9274 0.8309 33 1 -0.2176 2.8126 -0.5598 34 1 -0.8087 3.9165 -2.6785 35 1 -1.3998 3.9839 -5.3446 36 1 -0.8819 5.0674 -4.0307 37 1 -0.4896 5.4666 -5.7204 38 1 0.9778 3.8673 -6.9569 39 1 2.1047 2.8864 -5.9894 40 1 2.9265 3.4814 -7.9727 41 1 2.8361 2.5085 -4.4177 42 1 3.4217 1.4157 -2.2916 43 1 3.0797 -0.6611 1.1756 44 1 1.5610 -0.3873 2.0628 45 1 3.1559 -2.5764 2.4885 46 1 1.5595 -3.2807 2.8827 47 1 3.7741 -4.5433 1.4695 48 1 2.1785 -5.2492 1.8641 49 1 2.9963 -4.7058 -0.7318 50 1 1.2794 -4.6920 -0.2264 51 1 1.6287 -2.5521 -1.0801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236120779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:32 Heat of formation + Delta-G solvation = 19.569779 kcal Electronic energy + Delta-G solvation = -26463.028507 eV Core-core repulsion = 22975.083241 eV Total energy + Delta-G solvation = -3487.945265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.66586 -39.76992 -38.17467 -36.75036 -34.97782 -32.14487 -31.92042 -31.07638 -30.36532 -29.37241 -28.15632 -26.97579 -25.81564 -24.40174 -23.16148 -22.79820 -21.65872 -21.07435 -20.85934 -19.10653 -18.12473 -17.75144 -16.84312 -16.68333 -16.22851 -16.06158 -15.80659 -15.74954 -15.58865 -15.13387 -14.91783 -14.59580 -14.37714 -14.16362 -14.05924 -13.76160 -13.29589 -13.23859 -13.19702 -12.92278 -12.83428 -12.76157 -12.69943 -12.53972 -12.46550 -12.33127 -12.30057 -12.02735 -11.98580 -11.61854 -11.49545 -11.32333 -11.27053 -10.61880 -10.34796 -9.69960 -9.41110 -9.09584 -8.77763 -7.91129 -6.45452 0.66618 0.79539 1.48821 1.57526 1.76029 2.44808 2.55729 2.88020 3.08880 3.28021 3.43133 3.84348 3.89159 4.00643 4.05726 4.13837 4.16219 4.24032 4.34791 4.36021 4.45150 4.49026 4.56186 4.58030 4.64624 4.68705 4.70901 4.74122 4.78215 4.80252 4.84409 4.85630 4.97838 5.01258 5.02852 5.05093 5.05537 5.13617 5.23976 5.26026 5.29111 5.55872 5.60980 5.83180 5.89683 5.95889 5.99370 6.15066 6.22234 6.30792 6.42856 6.47440 6.62415 6.84393 7.34118 8.65510 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.002544 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.189303 B =11003.029211 C =11655.659461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.116 3.884 4 C -0.147 4.147 5 C -0.058 4.058 6 C -0.215 4.215 7 C 0.210 3.790 8 N -0.630 5.630 9 C 0.099 3.901 10 C 0.254 3.746 11 C -0.614 4.614 12 H 0.041 0.959 13 C -0.029 4.029 14 N -0.932 5.932 15 Si 1.118 2.882 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.280 1.280 19 C -0.217 4.217 20 C -0.054 4.054 21 C 0.073 3.927 22 C 0.072 3.928 23 H 0.048 0.952 24 C -0.119 4.119 25 C -0.122 4.122 26 C 0.030 3.970 27 N -0.664 5.664 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.003 0.997 39 H 0.004 0.996 40 H 0.256 0.744 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.040 0.960 51 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -12.738 22.588 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.011 4.011 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.238 4.238 7 C 0.106 3.894 8 N -0.338 5.338 9 C -0.044 4.044 10 C 0.132 3.868 11 C -0.653 4.653 12 H 0.059 0.941 13 C -0.227 4.227 14 N -0.569 5.569 15 Si 0.939 3.061 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.205 1.205 19 C -0.240 4.240 20 C -0.073 4.073 21 C -0.055 4.055 22 C -0.038 4.038 23 H 0.066 0.934 24 C -0.157 4.157 25 C -0.160 4.160 26 C -0.100 4.100 27 N -0.294 5.294 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.059 0.941 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.498 -12.031 21.303 25.076 hybrid contribution -2.377 -0.587 0.503 2.499 sum -7.874 -12.618 21.805 26.395 Atomic orbital electron populations 1.22431 0.87455 1.01706 1.00810 1.61894 1.07970 1.13179 1.43503 1.20774 0.99968 0.87530 0.92813 1.19467 0.96155 1.03285 0.96092 1.20889 0.95641 0.94805 0.96391 1.20764 1.01548 1.08432 0.93017 1.18203 0.93569 0.91199 0.86429 1.46749 1.21465 1.55314 1.10312 1.21595 0.84723 0.95547 1.02485 1.18878 0.88406 0.95662 0.83890 1.22615 1.18267 1.12016 1.12354 0.94078 1.27272 1.00038 1.03491 0.91948 1.70906 1.38517 1.13880 1.33601 0.82914 0.74254 0.72448 0.76461 1.19459 1.20263 1.20513 1.20719 0.98164 1.05772 0.99325 1.20751 0.98965 0.96116 0.91446 1.22111 1.00258 0.92160 0.90962 1.22492 0.96569 0.93974 0.90803 0.93419 1.22332 1.00999 0.95436 0.96974 1.22276 1.01797 0.97692 0.94221 1.22961 0.99970 0.89445 0.97607 1.63577 1.52915 1.08144 1.04742 0.92068 0.91504 0.94864 0.90554 0.93327 0.84175 0.84927 0.92871 0.90131 0.92728 0.97883 0.97812 0.93431 0.89338 0.86337 0.90920 0.93689 0.90997 0.90154 0.91295 0.90228 0.90712 0.94133 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.94 127.69 1.14 1.59 16 2 N -0.54 -11.42 4.62 -927.07 -4.28 -15.71 16 3 C 0.12 2.65 5.12 85.55 0.44 3.09 16 4 C -0.15 -4.31 4.89 -19.84 -0.10 -4.41 16 5 C -0.06 -1.64 7.95 22.25 0.18 -1.46 16 6 C -0.21 -7.14 9.21 22.40 0.21 -6.93 16 7 C 0.21 8.80 6.55 38.21 0.25 9.05 16 8 N -0.63 -28.34 2.99 -726.56 -2.17 -30.51 16 9 C 0.10 3.53 10.19 127.77 1.30 4.83 16 10 C 0.25 13.60 4.23 85.64 0.36 13.96 16 11 C -0.61 -35.53 9.39 25.60 0.24 -35.29 16 12 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 13 C -0.03 -1.69 5.46 84.65 0.46 -1.22 16 14 N -0.93 -57.40 13.65 21.45 0.29 -57.11 16 15 Si 1.12 51.29 29.90 68.60 2.05 53.34 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 C -0.22 -9.44 9.21 22.40 0.21 -9.24 16 20 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16 21 C 0.07 1.28 4.58 86.30 0.40 1.67 16 22 C 0.07 1.16 2.95 45.06 0.13 1.30 16 23 H 0.05 0.76 6.66 -2.39 -0.02 0.74 16 24 C -0.12 -1.54 6.55 31.49 0.21 -1.33 16 25 C -0.12 -1.57 7.00 31.49 0.22 -1.35 16 26 C 0.03 0.47 7.47 86.45 0.65 1.11 16 27 N -0.66 -13.05 7.15 -478.93 -3.42 -16.48 16 28 H 0.06 1.35 6.16 -2.39 -0.01 1.34 16 29 H 0.07 1.14 6.37 -2.38 -0.02 1.12 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 1.75 7.87 -2.39 -0.02 1.73 16 32 H 0.05 0.96 8.06 -2.39 -0.02 0.94 16 33 H 0.14 2.99 8.03 -2.91 -0.02 2.96 16 34 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 35 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 2.42 6.20 -2.39 -0.01 2.40 16 37 H 0.05 2.03 8.07 -2.39 -0.02 2.01 16 38 H 0.00 0.18 7.94 -2.39 -0.02 0.16 16 39 H 0.00 0.23 6.05 -2.39 -0.01 0.22 16 40 H 0.26 15.92 7.22 -92.71 -0.67 15.25 16 41 H 0.09 4.46 6.14 -2.91 -0.02 4.44 16 42 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.07 1.40 7.88 -2.39 -0.02 1.38 16 44 H 0.05 0.67 8.12 -2.38 -0.02 0.65 16 45 H 0.07 0.95 7.82 -2.39 -0.02 0.93 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 51 H 0.34 7.21 8.92 -89.69 -0.80 6.41 16 Total: -1.00 -66.87 395.52 -0.83 -67.70 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.20 Total: 25.10 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 6.50 Total: -26.33 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -9.59 Total: -119.80 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -66.87 -0.83 -67.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236120779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.266 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds