Wall clock time and date at job start Tue Mar 31 2020 11:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46893 * 109.47276 * 2 1 4 4 C 1.46903 * 111.00041 * 199.68942 * 3 2 1 5 5 C 1.50696 * 109.47255 * 66.04486 * 4 3 2 6 6 H 1.08004 * 120.00197 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00182 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99972 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00159 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46984 * 89.99526 * 9 7 5 11 11 H 1.48495 * 109.47545 * 209.99902 * 9 7 5 12 12 H 1.48502 * 109.46860 * 329.99581 * 9 7 5 13 13 C 1.46898 * 111.00445 * 75.73475 * 3 2 1 14 14 C 1.50695 * 109.47558 * 199.80073 * 13 3 2 15 15 C 1.38303 * 119.96566 * 84.37769 * 14 13 3 16 16 C 1.38268 * 120.15529 * 180.02562 * 15 14 13 17 17 C 1.38134 * 120.06942 * 0.02562 * 16 15 14 18 18 C 1.38887 * 119.92281 * 359.97438 * 17 16 15 19 19 N 1.39679 * 120.07071 * 179.97438 * 18 17 16 20 20 C 1.46960 * 111.00016 * 359.97438 * 19 18 17 21 21 C 1.53050 * 109.36101 * 176.81478 * 20 19 18 22 22 N 1.46949 * 109.36980 * 58.40414 * 21 20 19 23 23 C 1.46901 * 111.00377 * 176.80997 * 22 21 20 24 24 C 1.46960 * 110.88044 * 300.67862 * 22 21 20 25 25 C 1.46962 * 110.99920 * 236.20207 * 19 18 17 26 26 C 1.38089 * 119.96137 * 264.65755 * 14 13 3 27 27 H 1.08991 * 109.47395 * 294.86602 * 1 2 3 28 28 H 1.09009 * 109.46748 * 54.86645 * 1 2 3 29 29 H 1.09005 * 109.47365 * 174.85869 * 1 2 3 30 30 H 1.09000 * 109.47549 * 239.99634 * 2 1 3 31 31 H 1.09004 * 109.46815 * 119.99971 * 2 1 3 32 32 H 1.09008 * 109.47111 * 186.04288 * 4 3 2 33 33 H 1.08994 * 109.47138 * 306.03972 * 4 3 2 34 34 H 0.97003 * 120.00272 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47209 * 79.79543 * 13 3 2 36 36 H 1.09001 * 109.46655 * 319.80124 * 13 3 2 37 37 H 1.08002 * 119.92464 * 0.04025 * 15 14 13 38 38 H 1.07995 * 119.96928 * 179.97438 * 16 15 14 39 39 H 1.07994 * 120.03629 * 179.97438 * 17 16 15 40 40 H 1.08992 * 109.48701 * 56.84782 * 20 19 18 41 41 H 1.08998 * 109.48761 * 296.78048 * 20 19 18 42 42 H 1.09001 * 109.48697 * 178.37369 * 21 20 19 43 43 H 1.09002 * 109.48585 * 298.40653 * 21 20 19 44 44 H 1.09000 * 109.46606 * 59.99983 * 23 22 21 45 45 H 1.08996 * 109.47381 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.46727 * 299.99962 * 23 22 21 47 47 H 1.08997 * 109.49476 * 179.28679 * 24 22 21 48 48 H 1.09003 * 109.48861 * 299.35093 * 24 22 21 49 49 H 1.08998 * 109.48682 * 63.21799 * 25 19 18 50 50 H 1.09001 * 109.50473 * 303.16674 * 25 19 18 51 51 H 1.07993 * 120.03710 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4125 1.4508 -0.4621 5 6 3.4804 1.0465 -1.9122 6 1 2.5789 0.7688 -2.4382 7 6 4.6932 1.0322 -2.5679 8 7 4.7525 0.6789 -3.8333 9 14 6.2524 1.5131 -1.6585 10 1 6.8552 0.3065 -1.0372 11 1 7.2179 2.1127 -2.6141 12 1 5.9234 2.5025 -0.6010 13 6 1.8766 1.9940 1.3291 14 6 1.9152 3.4950 1.2007 15 6 0.7617 4.1916 0.8895 16 6 0.7927 5.5688 0.7703 17 6 1.9772 6.2534 0.9612 18 6 3.1374 5.5570 1.2738 19 7 4.3369 6.2461 1.4670 20 6 4.1470 7.6929 1.2922 21 6 5.4624 8.4168 1.5894 22 7 6.5097 7.9136 0.6897 23 6 7.7712 8.6384 0.8929 24 6 6.6995 6.4668 0.8644 25 6 5.3841 5.7433 0.5668 26 6 3.1036 4.1728 1.3882 27 1 -0.3634 0.4321 0.9323 28 1 -0.3633 0.5915 -0.8405 29 1 -0.3634 -1.0236 -0.0921 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 3.7844 2.4695 -0.3511 33 1 4.0251 0.7736 0.1330 34 1 5.6057 0.6691 -4.2947 35 1 2.6935 1.6630 1.9703 36 1 0.9254 1.6911 1.7670 37 1 -0.1657 3.6587 0.7396 38 1 -0.1097 6.1097 0.5268 39 1 2.0009 7.3290 0.8675 40 1 3.3758 8.0438 1.9779 41 1 3.8427 7.8984 0.2660 42 1 5.3317 9.4875 1.4325 43 1 5.7524 8.2337 2.6241 44 1 8.1031 8.5082 1.9229 45 1 8.5290 8.2458 0.2149 46 1 7.6174 9.6986 0.6918 47 1 7.4707 6.1158 0.1788 48 1 7.0039 6.2613 1.8906 49 1 5.0934 5.9270 -0.4676 50 1 5.5149 4.6725 0.7230 51 1 4.0048 3.6279 1.6271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236897121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:21 Heat of formation + Delta-G solvation = 52.811682 kcal Electronic energy + Delta-G solvation = -27674.114417 eV Core-core repulsion = 24187.610629 eV Total energy + Delta-G solvation = -3486.503788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.32683 -38.53204 -36.92417 -35.25444 -32.57366 -31.89354 -31.03009 -30.25728 -29.85595 -27.74330 -27.13853 -24.99675 -24.05303 -23.68467 -22.14692 -21.48387 -21.03123 -19.95698 -19.35480 -17.21918 -16.80338 -15.82043 -15.65175 -15.33812 -15.18280 -14.89673 -14.66258 -14.56174 -14.42249 -14.19093 -13.78674 -13.50940 -13.44670 -12.89465 -12.63370 -12.55348 -12.40750 -12.24143 -12.01262 -11.88006 -11.71579 -11.46700 -11.35367 -11.19939 -11.13840 -11.01159 -10.87800 -10.73330 -10.62146 -10.31869 -10.01827 -9.80265 -9.50338 -9.21425 -8.56809 -8.55782 -8.42963 -7.61354 -7.36827 -6.03660 -3.99834 1.68197 1.73315 3.26695 3.34070 3.35041 3.65661 3.73490 4.13823 4.42248 4.67514 4.80425 4.87527 4.96424 5.08723 5.14777 5.17101 5.22346 5.29289 5.31054 5.34195 5.37304 5.46617 5.57281 5.60378 5.63116 5.69893 5.71925 5.74644 5.79861 5.86122 5.91526 5.96012 6.01735 6.09946 6.14389 6.26523 6.34621 6.48053 6.68979 6.72371 6.72635 6.78310 6.79992 6.92188 6.96751 7.00270 7.08298 7.13745 7.52517 7.64757 7.94217 8.08708 8.68220 9.05665 9.58511 11.09627 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.004902 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.695852 B = 5711.116621 C = 7800.317472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.520 5.520 4 C 0.161 3.839 5 C -0.505 4.505 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.087 3.913 14 C -0.035 4.035 15 C -0.120 4.120 16 C -0.099 4.099 17 C -0.175 4.175 18 C 0.106 3.894 19 N -0.491 5.491 20 C 0.054 3.946 21 C 0.057 3.943 22 N -0.546 5.546 23 C 0.026 3.974 24 C 0.056 3.944 25 C 0.056 3.944 26 C -0.126 4.126 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.018 0.982 32 H 0.032 0.968 33 H -0.020 1.020 34 H 0.263 0.737 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.025 0.975 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.056 0.944 50 H 0.089 0.911 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 13.485 13.205 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.244 5.244 4 C 0.034 3.966 5 C -0.544 4.544 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.041 4.041 14 C -0.036 4.036 15 C -0.140 4.140 16 C -0.118 4.118 17 C -0.196 4.196 18 C 0.009 3.991 19 N -0.207 5.207 20 C -0.074 4.074 21 C -0.072 4.072 22 N -0.271 5.271 23 C -0.122 4.122 24 C -0.072 4.072 25 C -0.069 4.069 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.036 0.964 32 H 0.050 0.950 33 H -0.002 1.002 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.107 0.893 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.342 13.745 12.718 18.775 hybrid contribution 1.560 -0.209 0.984 1.856 sum 0.218 13.536 13.702 19.262 Atomic orbital electron populations 1.21783 0.96361 1.00507 1.01399 1.22027 0.94542 0.89627 1.01193 1.61971 1.23965 1.17184 1.21305 1.20232 0.83670 0.96228 0.96420 1.21038 0.95321 1.44521 0.93482 0.90120 1.24876 0.98614 0.95044 0.94716 1.69891 1.25687 1.48771 1.09631 0.86922 0.83925 0.79234 0.80041 1.20463 1.21158 1.19091 1.21082 1.00594 0.90442 0.92022 1.19652 0.92598 0.95297 0.96072 1.20863 0.98190 0.93654 1.01259 1.20897 0.97199 0.94364 0.99308 1.21128 0.93266 0.99664 1.05546 1.18772 0.89615 0.92800 0.97902 1.59326 1.06245 1.04015 1.51127 1.22313 0.97157 0.86681 1.01236 1.22192 0.91308 0.98949 0.94715 1.62153 1.07619 1.04035 1.53273 1.22341 0.91216 0.99036 0.99619 1.22222 0.97329 0.87137 1.00522 1.22353 0.89812 0.99786 0.94987 1.20650 0.98045 0.92160 1.03777 0.93915 0.91943 0.93260 0.89018 0.96369 0.94955 1.00205 0.92743 0.94920 0.90750 0.86308 0.86467 0.86204 0.89657 0.92710 0.90071 0.93975 0.95643 0.91232 0.91330 0.89783 0.93832 0.92534 0.89256 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.96 37.16 0.37 -1.85 16 2 C 0.05 1.02 5.51 -3.83 -0.02 1.00 16 3 N -0.52 -10.81 4.34 -237.53 -1.03 -11.84 16 4 C 0.16 3.89 3.61 -4.98 -0.02 3.87 16 5 C -0.51 -14.34 8.79 -34.44 -0.30 -14.64 16 6 H 0.08 2.50 7.56 -52.48 -0.40 2.10 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 9 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.09 1.51 4.94 -4.98 -0.02 1.48 16 14 C -0.03 -0.60 5.04 -104.66 -0.53 -1.13 16 15 C -0.12 -1.88 9.72 -39.55 -0.38 -2.26 16 16 C -0.10 -1.40 10.04 -39.61 -0.40 -1.80 16 17 C -0.18 -2.51 8.82 -39.38 -0.35 -2.86 16 18 C 0.11 1.67 5.64 -83.79 -0.47 1.20 16 19 N -0.49 -7.05 4.76 -170.95 -0.81 -7.87 16 20 C 0.05 0.63 4.29 -3.77 -0.02 0.61 16 21 C 0.06 0.59 5.62 -3.77 -0.02 0.57 16 22 N -0.55 -6.34 4.97 -242.76 -1.21 -7.55 16 23 C 0.03 0.24 9.60 60.07 0.58 0.81 16 24 C 0.06 0.71 5.62 -3.76 -0.02 0.69 16 25 C 0.06 0.85 5.37 -3.76 -0.02 0.83 16 26 C -0.13 -2.17 7.54 -39.38 -0.30 -2.47 16 27 H 0.04 0.59 6.89 -51.93 -0.36 0.23 16 28 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.99 6.58 -51.93 -0.34 1.64 16 31 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 32 H 0.03 0.80 5.37 -51.92 -0.28 0.52 16 33 H -0.02 -0.48 7.55 -51.93 -0.39 -0.87 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.03 0.57 7.90 -51.93 -0.41 0.16 16 36 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 37 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.44 5.81 -52.49 -0.31 1.14 16 40 H 0.09 0.88 7.17 -51.93 -0.37 0.51 16 41 H 0.05 0.69 7.58 -51.93 -0.39 0.29 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.09 1.47 6.81 -51.93 -0.35 1.11 16 51 H 0.12 2.09 7.09 -52.49 -0.37 1.72 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -31.06 388.49 -12.08 -43.14 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.97 Total: 2.39 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.02 Total: -14.04 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -2.28 Total: -54.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.06 -12.08 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236897121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.951 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds