Wall clock time and date at job start Tue Mar 31 2020 11:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46893 * 109.47276 * 2 1 4 4 C 1.46903 * 111.00041 * 199.68942 * 3 2 1 5 5 C 1.50696 * 109.47255 * 66.04486 * 4 3 2 6 6 H 1.08004 * 120.00197 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00182 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99972 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00159 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46984 * 89.99526 * 9 7 5 11 11 H 1.48495 * 109.47545 * 209.99902 * 9 7 5 12 12 H 1.48502 * 109.46860 * 329.99581 * 9 7 5 13 13 C 1.46898 * 111.00445 * 75.73475 * 3 2 1 14 14 C 1.50695 * 109.47558 * 199.80073 * 13 3 2 15 15 C 1.38303 * 119.96566 * 84.37769 * 14 13 3 16 16 C 1.38268 * 120.15529 * 180.02562 * 15 14 13 17 17 C 1.38134 * 120.06942 * 0.02562 * 16 15 14 18 18 C 1.38887 * 119.92281 * 359.97438 * 17 16 15 19 19 N 1.39679 * 120.07071 * 179.97438 * 18 17 16 20 20 C 1.46960 * 111.00016 * 359.97438 * 19 18 17 21 21 C 1.53050 * 109.36101 * 176.81478 * 20 19 18 22 22 N 1.46949 * 109.36980 * 58.40414 * 21 20 19 23 23 C 1.46901 * 111.00377 * 176.80997 * 22 21 20 24 24 C 1.46960 * 110.88044 * 300.67862 * 22 21 20 25 25 C 1.46962 * 110.99920 * 236.20207 * 19 18 17 26 26 C 1.38089 * 119.96137 * 264.65755 * 14 13 3 27 27 H 1.08991 * 109.47395 * 294.86602 * 1 2 3 28 28 H 1.09009 * 109.46748 * 54.86645 * 1 2 3 29 29 H 1.09005 * 109.47365 * 174.85869 * 1 2 3 30 30 H 1.09000 * 109.47549 * 239.99634 * 2 1 3 31 31 H 1.09004 * 109.46815 * 119.99971 * 2 1 3 32 32 H 1.09008 * 109.47111 * 186.04288 * 4 3 2 33 33 H 1.08994 * 109.47138 * 306.03972 * 4 3 2 34 34 H 0.97003 * 120.00272 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47209 * 79.79543 * 13 3 2 36 36 H 1.09001 * 109.46655 * 319.80124 * 13 3 2 37 37 H 1.08002 * 119.92464 * 0.04025 * 15 14 13 38 38 H 1.07995 * 119.96928 * 179.97438 * 16 15 14 39 39 H 1.07994 * 120.03629 * 179.97438 * 17 16 15 40 40 H 1.08992 * 109.48701 * 56.84782 * 20 19 18 41 41 H 1.08998 * 109.48761 * 296.78048 * 20 19 18 42 42 H 1.09001 * 109.48697 * 178.37369 * 21 20 19 43 43 H 1.09002 * 109.48585 * 298.40653 * 21 20 19 44 44 H 1.09000 * 109.46606 * 59.99983 * 23 22 21 45 45 H 1.08996 * 109.47381 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.46727 * 299.99962 * 23 22 21 47 47 H 1.08997 * 109.49476 * 179.28679 * 24 22 21 48 48 H 1.09003 * 109.48861 * 299.35093 * 24 22 21 49 49 H 1.08998 * 109.48682 * 63.21799 * 25 19 18 50 50 H 1.09001 * 109.50473 * 303.16674 * 25 19 18 51 51 H 1.07993 * 120.03710 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4125 1.4508 -0.4621 5 6 3.4804 1.0465 -1.9122 6 1 2.5789 0.7688 -2.4382 7 6 4.6932 1.0322 -2.5679 8 7 4.7525 0.6789 -3.8333 9 14 6.2524 1.5131 -1.6585 10 1 6.8552 0.3065 -1.0372 11 1 7.2179 2.1127 -2.6141 12 1 5.9234 2.5025 -0.6010 13 6 1.8766 1.9940 1.3291 14 6 1.9152 3.4950 1.2007 15 6 0.7617 4.1916 0.8895 16 6 0.7927 5.5688 0.7703 17 6 1.9772 6.2534 0.9612 18 6 3.1374 5.5570 1.2738 19 7 4.3369 6.2461 1.4670 20 6 4.1470 7.6929 1.2922 21 6 5.4624 8.4168 1.5894 22 7 6.5097 7.9136 0.6897 23 6 7.7712 8.6384 0.8929 24 6 6.6995 6.4668 0.8644 25 6 5.3841 5.7433 0.5668 26 6 3.1036 4.1728 1.3882 27 1 -0.3634 0.4321 0.9323 28 1 -0.3633 0.5915 -0.8405 29 1 -0.3634 -1.0236 -0.0921 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 3.7844 2.4695 -0.3511 33 1 4.0251 0.7736 0.1330 34 1 5.6057 0.6691 -4.2947 35 1 2.6935 1.6630 1.9703 36 1 0.9254 1.6911 1.7670 37 1 -0.1657 3.6587 0.7396 38 1 -0.1097 6.1097 0.5268 39 1 2.0009 7.3290 0.8675 40 1 3.3758 8.0438 1.9779 41 1 3.8427 7.8984 0.2660 42 1 5.3317 9.4875 1.4325 43 1 5.7524 8.2337 2.6241 44 1 8.1031 8.5082 1.9229 45 1 8.5290 8.2458 0.2149 46 1 7.6174 9.6986 0.6918 47 1 7.4707 6.1158 0.1788 48 1 7.0039 6.2613 1.8906 49 1 5.0934 5.9270 -0.4676 50 1 5.5149 4.6725 0.7230 51 1 4.0048 3.6279 1.6271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236897121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:20 Heat of formation + Delta-G solvation = 31.948592 kcal Electronic energy + Delta-G solvation = -27675.019109 eV Core-core repulsion = 24187.610629 eV Total energy + Delta-G solvation = -3487.408480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.42395 -39.69700 -38.34665 -36.33412 -34.73503 -33.09629 -32.09740 -31.54239 -31.30708 -29.26550 -28.26108 -26.42256 -24.99369 -24.78797 -23.93305 -22.63800 -22.29548 -21.34193 -20.55865 -19.00824 -18.30559 -17.02269 -16.81520 -16.55571 -16.33923 -16.08752 -16.06828 -15.86903 -15.66094 -15.51711 -15.15101 -14.81297 -14.68036 -14.48411 -14.20567 -13.93666 -13.46987 -13.45518 -13.20258 -13.07812 -12.90842 -12.76565 -12.67054 -12.51151 -12.45390 -12.26564 -12.20577 -12.07791 -11.90276 -11.84733 -11.70910 -11.54222 -11.29230 -10.80129 -10.63483 -9.67131 -9.40803 -9.01461 -8.77684 -8.29687 -6.31149 0.47723 0.53289 1.28126 1.29963 1.40603 2.30968 2.55392 2.87976 2.95278 3.04297 3.41173 3.71671 3.85241 3.93110 3.97112 4.10517 4.14558 4.18440 4.26248 4.28019 4.40108 4.43507 4.50549 4.53313 4.55379 4.57887 4.60655 4.63069 4.73183 4.74306 4.75505 4.80762 4.87912 4.90740 4.97735 4.99826 5.01880 5.07751 5.11702 5.28492 5.31880 5.44861 5.55386 5.56614 5.75757 5.83615 5.89342 6.01895 6.02799 6.03657 6.37294 6.41747 6.65489 6.74713 7.31663 8.86952 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.004902 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.695852 B = 5711.116621 C = 7800.317472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.052 3.948 3 N -0.533 5.533 4 C 0.176 3.824 5 C -0.510 4.510 6 H 0.039 0.961 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.936 3.064 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.250 1.250 13 C 0.091 3.909 14 C -0.055 4.055 15 C -0.130 4.130 16 C -0.096 4.096 17 C -0.175 4.175 18 C 0.096 3.904 19 N -0.493 5.493 20 C 0.052 3.948 21 C 0.059 3.941 22 N -0.561 5.561 23 C 0.027 3.973 24 C 0.062 3.938 25 C 0.060 3.940 26 C -0.147 4.147 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.028 0.972 33 H -0.022 1.022 34 H 0.266 0.734 35 H 0.031 0.969 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.043 0.957 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.033 0.967 50 H 0.068 0.932 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 15.756 15.316 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.257 5.257 4 C 0.048 3.952 5 C -0.548 4.548 6 H 0.058 0.942 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.173 1.173 13 C -0.037 4.037 14 C -0.056 4.056 15 C -0.149 4.149 16 C -0.114 4.114 17 C -0.195 4.195 18 C -0.001 4.001 19 N -0.209 5.209 20 C -0.075 4.075 21 C -0.068 4.068 22 N -0.286 5.286 23 C -0.121 4.121 24 C -0.066 4.066 25 C -0.066 4.066 26 C -0.168 4.168 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.046 0.954 33 H -0.004 1.004 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.123 0.877 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.086 0.914 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.649 16.024 14.852 21.910 hybrid contribution 1.548 -0.902 0.297 1.817 sum -0.101 15.121 15.149 21.404 Atomic orbital electron populations 1.21687 0.93347 1.01848 1.02018 1.22039 0.96987 0.88569 0.99945 1.61899 1.21517 1.18440 1.23889 1.19906 0.86089 0.95404 0.93759 1.21249 0.93968 1.44055 0.95522 0.94249 1.25746 1.02337 0.95009 0.95491 1.70040 1.26801 1.50395 1.11492 0.85879 0.79341 0.79595 0.79205 1.19385 1.20530 1.17343 1.21129 1.01825 0.90700 0.90013 1.19731 0.93306 0.95136 0.97426 1.21098 0.98105 0.94583 1.01143 1.21286 0.98341 0.93973 0.97835 1.21469 0.92710 1.01001 1.04334 1.18974 0.90800 0.92535 0.97841 1.59340 1.05572 1.05403 1.50626 1.22449 0.98707 0.85053 1.01284 1.22240 0.90166 0.99981 0.94455 1.62165 1.09103 1.03347 1.53972 1.22391 0.90092 0.99544 1.00049 1.22115 0.95779 0.88071 1.00640 1.22237 0.91457 0.99089 0.93862 1.20668 0.97686 0.93151 1.05276 0.91495 0.93381 0.91224 0.92860 0.94945 0.95417 1.00444 0.92531 0.95066 0.88174 0.85060 0.83306 0.83681 0.87862 0.93430 0.87656 0.93918 0.95037 0.91119 0.89785 0.89573 0.93576 0.94849 0.91384 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.96 71.98 0.72 -3.19 16 2 C 0.05 1.99 5.51 86.30 0.48 2.47 16 3 N -0.53 -22.34 4.34 -905.41 -3.93 -26.28 16 4 C 0.18 8.70 3.61 85.56 0.31 9.01 16 5 C -0.51 -30.16 8.79 25.60 0.22 -29.94 16 6 H 0.04 2.59 7.56 -2.91 -0.02 2.57 16 7 C 0.01 0.68 5.47 84.65 0.46 1.14 16 8 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 9 Si 0.94 45.16 27.47 68.60 1.88 47.04 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 13 C 0.09 3.08 4.94 85.56 0.42 3.51 16 14 C -0.05 -1.85 5.04 -19.89 -0.10 -1.95 16 15 C -0.13 -3.84 9.72 22.29 0.22 -3.62 16 16 C -0.10 -2.47 10.04 22.25 0.22 -2.24 16 17 C -0.17 -4.61 8.82 22.40 0.20 -4.42 16 18 C 0.10 2.94 5.64 38.21 0.22 3.16 16 19 N -0.49 -13.74 4.76 -694.77 -3.30 -17.04 16 20 C 0.05 1.11 4.29 86.31 0.37 1.48 16 21 C 0.06 1.09 5.62 86.31 0.49 1.57 16 22 N -0.56 -11.94 4.97 -921.95 -4.58 -16.52 16 23 C 0.03 0.42 9.60 127.69 1.23 1.65 16 24 C 0.06 1.52 5.62 86.31 0.49 2.01 16 25 C 0.06 1.81 5.37 86.31 0.46 2.27 16 26 C -0.15 -5.10 7.54 22.40 0.17 -4.93 16 27 H 0.07 1.67 6.89 -2.39 -0.02 1.65 16 28 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.05 2.42 6.58 -2.39 -0.02 2.40 16 31 H 0.03 1.13 8.00 -2.38 -0.02 1.11 16 32 H 0.03 1.40 5.37 -2.38 -0.01 1.39 16 33 H -0.02 -1.09 7.55 -2.39 -0.02 -1.11 16 34 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.03 1.06 7.90 -2.39 -0.02 1.05 16 36 H 0.10 2.84 6.54 -2.39 -0.02 2.82 16 37 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.15 3.03 5.81 -2.91 -0.02 3.01 16 40 H 0.10 1.82 7.17 -2.39 -0.02 1.80 16 41 H 0.05 1.10 7.58 -2.39 -0.02 1.08 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 46 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.09 2.02 8.13 -2.39 -0.02 2.01 16 48 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.07 2.30 6.81 -2.39 -0.02 2.29 16 51 H 0.10 3.75 7.09 -2.91 -0.02 3.73 16 Total: -1.00 -70.07 388.49 -2.24 -72.31 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.83 Total: 22.40 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 6.56 Total: -22.04 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -11.52 Total: -119.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -70.07 -2.24 -72.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236897121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.259 kcal (2) G-P(sol) polarization free energy of solvation -70.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds