Wall clock time and date at job start Tue Mar 31 2020 12:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.50706 * 109.46929 * 66.04676 * 3 2 1 5 5 H 1.07998 * 119.99628 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00190 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 120.00193 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47081 * 89.99276 * 8 6 4 10 10 H 1.48499 * 109.47356 * 209.99897 * 8 6 4 11 11 H 1.48503 * 109.46728 * 329.99994 * 8 6 4 12 12 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 13 13 C 1.50708 * 109.46760 * 293.95026 * 12 2 1 14 14 C 1.38767 * 120.79749 * 90.00151 * 13 12 2 15 15 Cl 1.73597 * 120.42339 * 0.02562 * 14 13 12 16 16 C 1.38309 * 119.14452 * 180.02562 * 14 13 12 17 17 N 1.31870 * 120.77305 * 359.97438 * 16 14 13 18 18 C 1.31850 * 121.74691 * 0.02562 * 17 16 14 19 19 C 1.38332 * 120.77834 * 359.71445 * 18 17 16 20 20 Br 1.89091 * 120.42360 * 180.31249 * 19 18 17 21 21 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 22 22 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 24 24 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 25 25 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 26 26 H 0.96996 * 120.00773 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47196 * 53.94614 * 12 2 1 28 28 H 1.09000 * 109.47010 * 173.95423 * 12 2 1 29 29 H 1.08004 * 119.60968 * 179.97438 * 16 14 13 30 30 H 1.07998 * 119.60987 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3491 1.5290 7 7 1.7143 3.9389 2.6618 8 14 3.0007 4.2759 0.2314 9 1 2.0641 4.9803 -0.6805 10 1 3.8879 5.2668 0.8919 11 1 3.8238 3.3171 -0.5486 12 6 1.9955 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 0.4511 -2.7228 -1.4894 15 17 -0.6480 -1.6823 -2.3397 16 6 0.1560 -4.0631 -1.3179 17 7 0.9862 -4.8597 -0.6735 18 6 2.1215 -4.4173 -0.1696 19 6 2.4871 -3.0901 -0.3061 20 35 4.1217 -2.4684 0.4129 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.0797 1.3445 -0.1082 25 1 1.5611 1.9274 -0.8309 26 1 1.9888 4.8550 2.8239 27 1 1.5611 -0.3872 -2.0628 28 1 3.0798 -0.6610 -1.1756 29 1 -0.7652 -4.4620 -1.7164 30 1 2.7757 -5.1000 0.3522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238391785.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:23 Heat of formation + Delta-G solvation = 45.985627 kcal Electronic energy + Delta-G solvation = -16693.005423 eV Core-core repulsion = 13789.003224 eV Total energy + Delta-G solvation = -2904.002199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58622 -37.19978 -36.59545 -33.60370 -32.44848 -31.80799 -29.66560 -28.11368 -27.19846 -24.35504 -23.44539 -21.94729 -20.26284 -17.29906 -17.11767 -16.63711 -16.02947 -15.35974 -14.57528 -14.35947 -14.09355 -13.96916 -13.43479 -12.60065 -12.47901 -12.36611 -12.18281 -11.77873 -11.50707 -11.40507 -11.14100 -10.82776 -10.71663 -10.34718 -10.25989 -9.89995 -9.69279 -9.43451 -9.31322 -8.96061 -8.59592 -7.49465 -6.06805 -4.04312 0.56693 0.80652 1.45097 1.91295 3.26128 3.30505 3.34409 3.35338 4.16010 4.34649 4.39795 4.43087 4.80279 4.85470 4.93548 5.25799 5.32877 5.51431 5.81212 5.90452 6.01004 6.09331 6.23637 6.64277 6.78935 6.92155 7.48645 7.51907 7.77506 7.92265 8.61055 9.01896 9.54235 11.06252 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.006065 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.421813 B = 4615.922690 C = 5945.417867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.513 5.513 3 C 0.165 3.835 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.872 3.128 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.071 3.929 13 C 0.016 3.984 14 C -0.084 4.084 15 Cl -0.040 7.040 16 C 0.122 3.878 17 N -0.467 5.467 18 C 0.131 3.869 19 C -0.121 4.121 20 Br -0.007 7.007 21 H 0.019 0.981 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.031 0.969 25 H -0.014 1.014 26 H 0.264 0.736 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.169 0.831 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -16.645 -9.560 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.237 5.237 3 C 0.039 3.961 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.699 3.301 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.057 4.057 13 C 0.005 3.995 14 C -0.115 4.115 15 Cl -0.011 7.011 16 C -0.036 4.036 17 N -0.176 5.176 18 C -0.028 4.028 19 C -0.203 4.203 20 Br 0.078 6.922 21 H 0.038 0.962 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.049 0.951 25 H 0.003 0.997 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.186 0.814 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.845 -17.232 -8.729 19.405 hybrid contribution -0.057 1.891 -1.648 2.509 sum 1.788 -15.341 -10.378 18.607 Atomic orbital electron populations 1.22490 0.87909 0.99683 1.01530 1.62055 1.07658 1.16620 1.37407 1.20223 0.95331 0.83233 0.97335 1.20968 1.35612 0.97151 1.00758 0.90047 1.24865 0.95737 0.97308 0.95269 1.69879 1.46811 1.13237 1.23877 0.86910 0.80714 0.80179 0.82253 1.20350 1.21102 1.19120 1.21328 1.02036 0.87311 0.95032 1.20235 0.90685 0.97451 0.91144 1.21996 0.93757 0.93289 1.02445 1.98393 1.61198 1.66294 1.75214 1.22855 0.98751 0.87836 0.94143 1.67936 1.03386 1.36890 1.09395 1.22925 0.93156 0.91954 0.94775 1.22920 0.97117 0.96296 1.04009 1.96806 1.22818 1.89279 1.83320 0.96238 0.93538 0.90185 0.95125 0.99652 0.92641 0.93203 0.88788 0.81365 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 7.85 60.06 0.47 1.09 16 2 N -0.51 -10.44 4.74 -245.82 -1.17 -11.60 16 3 C 0.16 3.89 3.79 -4.97 -0.02 3.87 16 4 C -0.51 -14.13 9.07 -34.44 -0.31 -14.45 16 5 H 0.08 2.49 7.35 -52.49 -0.39 2.10 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 8 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.07 1.19 4.51 -4.97 -0.02 1.17 16 13 C 0.02 0.23 4.91 -104.25 -0.51 -0.28 16 14 C -0.08 -1.11 5.24 -39.36 -0.21 -1.31 16 15 Cl -0.04 -0.50 24.42 -51.86 -1.27 -1.77 16 16 C 0.12 1.41 10.98 -17.51 -0.19 1.22 16 17 N -0.47 -5.75 10.36 -13.20 -0.14 -5.89 16 18 C 0.13 1.56 10.95 -17.51 -0.19 1.37 16 19 C -0.12 -1.65 6.24 -39.38 -0.25 -1.90 16 20 Br -0.01 -0.10 31.97 -68.01 -2.17 -2.28 16 21 H 0.02 0.36 7.47 -51.93 -0.39 -0.03 16 22 H 0.05 0.79 5.26 -51.93 -0.27 0.52 16 23 H 0.08 1.71 6.86 -51.93 -0.36 1.35 16 24 H 0.03 0.73 6.99 -51.93 -0.36 0.37 16 25 H -0.01 -0.34 7.55 -51.93 -0.39 -0.73 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.05 0.81 7.01 -51.93 -0.36 0.44 16 28 H 0.09 1.56 6.56 -51.93 -0.34 1.22 16 29 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 282.15 15.07 4.25 4.25 Total: -1.00 -29.98 282.15 -8.59 -38.57 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -2.87 Total: -3.99 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.33 Total: -7.33 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.53 Total: -44.01 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.27 Total: -1.77 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.17 Total: -2.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.98 -8.59 -38.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238391785.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.558 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds