Wall clock time and date at job start Tue Mar 31 2020 12:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31249 * 119.79943 * 2 1 4 4 C 1.32996 * 121.73690 * 179.70713 * 3 2 1 5 5 C 1.48042 * 119.44764 * 180.29008 * 4 3 2 6 6 C 1.40018 * 120.92309 * 0.29140 * 5 4 3 7 7 C 1.37922 * 119.01649 * 180.02562 * 6 5 4 8 8 N 1.31946 * 120.91937 * 359.97438 * 7 6 5 9 9 C 1.31973 * 122.05032 * 0.02562 * 8 7 6 10 10 Br 1.89097 * 119.56493 * 179.97438 * 9 8 7 11 11 C 1.38127 * 120.87196 * 359.71195 * 9 8 7 12 12 C 1.39834 * 121.10620 * 0.58715 * 4 3 2 13 13 C 1.36663 * 119.46782 * 359.45143 * 12 4 3 14 14 C 1.40960 * 119.80230 * 180.02562 * 2 1 3 15 15 C 1.41061 * 120.55791 * 359.97298 * 14 2 1 16 16 H 1.07997 * 119.99847 * 334.71994 * 15 14 2 17 17 C 1.40076 * 120.00088 * 154.71754 * 15 14 2 18 18 N 1.30755 * 120.00066 * 343.71178 * 17 15 14 19 19 Si 1.86800 * 120.00121 * 163.70912 * 17 15 14 20 20 H 1.48511 * 109.46725 * 94.77479 * 19 17 15 21 21 H 1.48496 * 109.47352 * 214.77433 * 19 17 15 22 22 H 1.48502 * 109.47125 * 334.78231 * 19 17 15 23 23 H 1.09003 * 109.47102 * 269.97883 * 1 2 3 24 24 H 1.09000 * 109.47429 * 29.97219 * 1 2 3 25 25 H 1.08996 * 109.47405 * 149.97642 * 1 2 3 26 26 H 1.07996 * 120.48781 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.53774 * 179.97438 * 7 6 5 28 28 H 1.07999 * 120.51051 * 180.28824 * 11 9 8 29 29 H 1.07991 * 120.27105 * 179.72388 * 12 4 3 30 30 H 1.07991 * 120.80041 * 180.23711 * 13 12 4 31 31 H 0.96999 * 120.00124 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1389 0.0000 4 6 3.4884 1.1839 0.0058 5 6 4.1722 2.4969 0.0120 6 6 3.4392 3.6899 0.0180 7 6 4.1166 4.8913 0.0231 8 7 5.4356 4.9259 0.0230 9 6 6.1650 3.8261 0.0174 10 35 8.0514 3.9577 0.0169 11 6 5.5688 2.5802 0.0175 12 6 4.2509 0.0118 -0.0001 13 6 3.6202 -1.2006 -0.0007 14 6 2.2076 -1.2232 -0.0005 15 6 1.5099 -2.4492 -0.0005 16 1 0.5080 -2.5004 0.3993 17 6 2.1167 -3.6003 -0.5191 18 7 3.1744 -3.4953 -1.2806 19 14 1.4149 -5.2855 -0.1227 20 1 0.4934 -5.7058 -1.2089 21 1 2.5222 -6.2678 -0.0052 22 1 0.6707 -5.2223 1.1608 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 2.3594 3.6695 0.0186 27 1 3.5596 5.8166 0.0274 28 1 6.1714 1.6839 0.0176 29 1 5.3296 0.0641 0.0002 30 1 4.1879 -2.1193 -0.0013 31 1 3.5948 -4.2924 -1.6394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241708920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:21 Heat of formation + Delta-G solvation = 48.566609 kcal Electronic energy + Delta-G solvation = -17451.044902 eV Core-core repulsion = 14549.587472 eV Total energy + Delta-G solvation = -2901.457430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82573 -38.51142 -34.65414 -33.09224 -32.18710 -31.25829 -30.41738 -29.33184 -27.15310 -25.71919 -23.34448 -22.78878 -20.86106 -20.33356 -17.67136 -16.80712 -16.06138 -15.55950 -15.27514 -14.56894 -14.17059 -14.03211 -13.71131 -13.32738 -13.25352 -12.65548 -11.92047 -11.84147 -11.81860 -11.59876 -11.34964 -11.23456 -11.08824 -10.84235 -10.72883 -10.29742 -10.03533 -9.80589 -9.36949 -9.27699 -8.65439 -8.48326 -8.29081 -7.56710 -7.18459 -4.75558 1.22250 1.32069 1.59334 2.50243 2.76839 2.84313 2.88458 3.01211 3.59462 3.98816 4.41398 4.73037 5.06301 5.35657 5.37104 5.44329 5.56338 5.83005 5.97546 6.10697 6.19894 6.33404 6.47541 6.49466 6.61773 6.69624 6.78533 6.90339 6.94157 7.10478 7.45652 7.57062 7.68225 8.05408 8.11186 8.30150 8.40911 9.35444 9.67846 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.023661 B = 0.003371 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.074456 B = 8303.778556 C = 9406.635985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.013 3.987 3 N -0.438 5.438 4 C -0.023 4.023 5 C 0.073 3.927 6 C -0.157 4.157 7 C 0.103 3.897 8 N -0.492 5.492 9 C 0.127 3.873 10 Br -0.030 7.030 11 C -0.157 4.157 12 C -0.114 4.114 13 C -0.146 4.146 14 C 0.077 3.923 15 C -0.419 4.419 16 H 0.093 0.907 17 C 0.070 3.930 18 N -0.767 5.767 19 Si 0.917 3.083 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.255 1.255 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 5.961 1.565 7.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 N -0.146 5.146 4 C -0.155 4.155 5 C 0.064 3.936 6 C -0.178 4.178 7 C -0.054 4.054 8 N -0.204 5.204 9 C -0.088 4.088 10 Br 0.053 6.947 11 C -0.180 4.180 12 C -0.135 4.135 13 C -0.170 4.170 14 C 0.072 3.928 15 C -0.447 4.447 16 H 0.111 0.889 17 C -0.152 4.152 18 N -0.389 5.389 19 Si 0.740 3.260 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.179 1.179 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.174 0.826 28 H 0.158 0.842 29 H 0.121 0.879 30 H 0.146 0.854 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.152 7.481 1.410 9.192 hybrid contribution -0.427 -2.430 0.010 2.467 sum 4.725 5.051 1.419 7.061 Atomic orbital electron populations 1.20278 0.90721 1.01448 1.00591 1.21006 0.95231 0.87814 1.09490 1.66636 1.08400 1.30611 1.08970 1.18406 0.89233 0.89827 1.18059 1.18988 0.91202 0.93126 0.90261 1.22329 1.02307 0.91964 1.01200 1.22548 0.88877 0.97920 0.96058 1.67235 1.07845 1.30557 1.14767 1.22331 0.91745 0.91099 1.03638 1.96670 1.01345 1.99001 1.97635 1.21931 0.94953 0.97081 1.04081 1.21275 0.98674 0.93368 1.00165 1.21310 0.94631 0.96655 1.04400 1.18472 0.92610 0.93228 0.88483 1.19836 1.01686 0.91859 1.31293 0.88908 1.26177 0.94163 1.02415 0.92466 1.69753 1.16381 1.32994 1.19771 0.86128 0.79764 0.79611 0.80530 1.18991 1.19583 1.17870 0.93097 0.92972 0.91353 0.83716 0.82607 0.84222 0.87926 0.85390 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 9.58 36.00 0.34 -1.04 16 2 C 0.01 0.29 6.86 -81.81 -0.56 -0.27 16 3 N -0.44 -10.04 9.40 -5.39 -0.05 -10.09 16 4 C -0.02 -0.50 6.74 -82.75 -0.56 -1.06 16 5 C 0.07 1.43 5.91 -104.58 -0.62 0.81 16 6 C -0.16 -2.74 9.66 -39.03 -0.38 -3.11 16 7 C 0.10 1.61 11.17 -17.62 -0.20 1.41 16 8 N -0.49 -8.47 10.30 -11.74 -0.12 -8.59 16 9 C 0.13 2.18 7.16 -17.53 -0.13 2.05 16 10 Br -0.03 -0.44 33.86 -68.01 -2.30 -2.74 16 11 C -0.16 -2.79 9.21 -39.00 -0.36 -3.15 16 12 C -0.11 -2.52 9.40 -39.55 -0.37 -2.89 16 13 C -0.15 -3.45 8.73 -38.99 -0.34 -3.79 16 14 C 0.08 1.86 5.58 -106.64 -0.60 1.27 16 15 C -0.42 -9.58 8.14 -37.82 -0.31 -9.89 16 16 H 0.09 1.98 6.87 -52.49 -0.36 1.62 16 17 C 0.07 1.52 5.19 -17.32 -0.09 1.43 16 18 N -0.77 -17.37 10.95 55.55 0.61 -16.76 16 19 Si 0.92 16.09 29.59 -169.99 -5.03 11.06 16 20 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 21 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 22 H -0.26 -4.45 7.11 56.52 0.40 -4.04 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.26 6.76 -51.93 -0.35 0.91 16 26 H 0.15 2.45 7.62 -52.49 -0.40 2.05 16 27 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.14 2.32 6.29 -52.49 -0.33 1.99 16 29 H 0.10 2.00 6.24 -52.49 -0.33 1.67 16 30 H 0.13 3.06 6.26 -52.49 -0.33 2.73 16 31 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -25.42 291.42 -9.16 -34.58 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -2.50 Total: 6.40 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -4.16 Total: -18.24 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.44 Total: -35.44 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.30 Total: -2.74 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.42 -9.16 -34.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241708920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.144 kcal (2) G-P(sol) polarization free energy of solvation -25.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds