Wall clock time and date at job start Tue Mar 31 2020 12:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31249 * 119.79943 * 2 1 4 4 C 1.32996 * 121.73690 * 179.70713 * 3 2 1 5 5 C 1.48042 * 119.44764 * 180.29008 * 4 3 2 6 6 C 1.40018 * 120.92309 * 0.29140 * 5 4 3 7 7 C 1.37922 * 119.01649 * 180.02562 * 6 5 4 8 8 N 1.31946 * 120.91937 * 359.97438 * 7 6 5 9 9 C 1.31973 * 122.05032 * 0.02562 * 8 7 6 10 10 Br 1.89097 * 119.56493 * 179.97438 * 9 8 7 11 11 C 1.38127 * 120.87196 * 359.71195 * 9 8 7 12 12 C 1.39834 * 121.10620 * 0.58715 * 4 3 2 13 13 C 1.36663 * 119.46782 * 359.45143 * 12 4 3 14 14 C 1.40960 * 119.80230 * 180.02562 * 2 1 3 15 15 C 1.41061 * 120.55791 * 359.97298 * 14 2 1 16 16 H 1.07997 * 119.99847 * 334.71994 * 15 14 2 17 17 C 1.40076 * 120.00088 * 154.71754 * 15 14 2 18 18 N 1.30755 * 120.00066 * 343.71178 * 17 15 14 19 19 Si 1.86800 * 120.00121 * 163.70912 * 17 15 14 20 20 H 1.48511 * 109.46725 * 94.77479 * 19 17 15 21 21 H 1.48496 * 109.47352 * 214.77433 * 19 17 15 22 22 H 1.48502 * 109.47125 * 334.78231 * 19 17 15 23 23 H 1.09003 * 109.47102 * 269.97883 * 1 2 3 24 24 H 1.09000 * 109.47429 * 29.97219 * 1 2 3 25 25 H 1.08996 * 109.47405 * 149.97642 * 1 2 3 26 26 H 1.07996 * 120.48781 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.53774 * 179.97438 * 7 6 5 28 28 H 1.07999 * 120.51051 * 180.28824 * 11 9 8 29 29 H 1.07991 * 120.27105 * 179.72388 * 12 4 3 30 30 H 1.07991 * 120.80041 * 180.23711 * 13 12 4 31 31 H 0.96999 * 120.00124 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1389 0.0000 4 6 3.4884 1.1839 0.0058 5 6 4.1722 2.4969 0.0120 6 6 3.4392 3.6899 0.0180 7 6 4.1166 4.8913 0.0231 8 7 5.4356 4.9259 0.0230 9 6 6.1650 3.8261 0.0174 10 35 8.0514 3.9577 0.0169 11 6 5.5688 2.5802 0.0175 12 6 4.2509 0.0118 -0.0001 13 6 3.6202 -1.2006 -0.0007 14 6 2.2076 -1.2232 -0.0005 15 6 1.5099 -2.4492 -0.0005 16 1 0.5080 -2.5004 0.3993 17 6 2.1167 -3.6003 -0.5191 18 7 3.1744 -3.4953 -1.2806 19 14 1.4149 -5.2855 -0.1227 20 1 0.4934 -5.7058 -1.2089 21 1 2.5222 -6.2678 -0.0052 22 1 0.6707 -5.2223 1.1608 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 2.3594 3.6695 0.0186 27 1 3.5596 5.8166 0.0274 28 1 6.1714 1.6839 0.0176 29 1 5.3296 0.0641 0.0002 30 1 4.1879 -2.1193 -0.0013 31 1 3.5948 -4.2924 -1.6394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241708920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:20 Heat of formation + Delta-G solvation = 36.349646 kcal Electronic energy + Delta-G solvation = -17451.574669 eV Core-core repulsion = 14549.587472 eV Total energy + Delta-G solvation = -2901.987197 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26230 -40.13035 -36.28782 -34.63743 -33.53228 -32.87542 -32.01476 -30.64676 -28.78264 -27.31862 -24.81552 -24.27911 -22.45760 -21.96441 -19.35660 -18.27530 -17.53881 -17.07773 -16.67275 -16.19109 -15.66764 -15.43908 -15.24628 -14.85323 -14.63767 -14.22521 -13.54691 -13.43593 -13.40428 -13.13826 -12.82798 -12.67511 -12.59721 -12.24698 -11.99688 -11.68817 -11.49197 -11.36515 -10.89335 -10.64204 -10.23035 -10.02327 -9.94854 -9.24954 -8.81181 -6.47977 -0.25336 -0.03139 0.30479 0.88987 1.08556 1.39948 1.51545 1.57056 2.13506 2.51349 2.85580 3.35649 3.63458 3.69741 3.96663 4.00290 4.12937 4.36851 4.53401 4.55895 4.67860 4.78893 4.91118 4.96713 5.01845 5.12224 5.20624 5.38862 5.46919 5.54169 5.75291 5.88691 5.94401 6.40096 6.61146 6.69191 6.72238 7.61887 8.09282 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.023661 B = 0.003371 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.074456 B = 8303.778556 C = 9406.635985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.009 4.009 3 N -0.448 5.448 4 C -0.031 4.031 5 C 0.048 3.952 6 C -0.157 4.157 7 C 0.114 3.886 8 N -0.496 5.496 9 C 0.118 3.882 10 Br -0.004 7.004 11 C -0.157 4.157 12 C -0.122 4.122 13 C -0.167 4.167 14 C 0.049 3.951 15 C -0.443 4.443 16 H 0.102 0.898 17 C 0.034 3.966 18 N -0.800 5.800 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.252 1.252 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.198 0.802 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 6.767 1.808 8.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.156 4.156 3 N -0.157 5.157 4 C -0.164 4.164 5 C 0.039 3.961 6 C -0.177 4.177 7 C -0.043 4.043 8 N -0.208 5.208 9 C -0.098 4.098 10 Br 0.080 6.920 11 C -0.180 4.180 12 C -0.143 4.143 13 C -0.192 4.192 14 C 0.043 3.957 15 C -0.471 4.471 16 H 0.119 0.881 17 C -0.185 4.185 18 N -0.424 5.424 19 Si 0.808 3.192 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.175 1.175 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.214 0.786 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.047 8.297 1.651 9.851 hybrid contribution -0.259 -2.475 -0.077 2.489 sum 4.788 5.823 1.574 7.701 Atomic orbital electron populations 1.20275 0.88364 1.02040 1.01664 1.21590 0.97052 0.87626 1.09315 1.66723 1.08792 1.30578 1.09565 1.18872 0.89347 0.91138 1.17027 1.19038 0.92098 0.92695 0.92289 1.22459 1.02533 0.91991 1.00752 1.23140 0.88522 0.98754 0.93915 1.67387 1.08530 1.30480 1.14431 1.22617 0.93237 0.90819 1.03097 1.96688 0.98828 1.98957 1.97519 1.22003 0.94445 0.97871 1.03719 1.21504 0.99806 0.93065 0.99878 1.21350 0.95016 0.96881 1.05918 1.18820 0.93028 0.94356 0.89447 1.20100 1.02373 0.92337 1.32290 0.88057 1.27012 0.94191 1.05661 0.91617 1.69797 1.17608 1.34365 1.20591 0.85070 0.79016 0.74806 0.80322 1.18367 1.19173 1.17518 0.91670 0.91886 0.91135 0.83437 0.78556 0.83645 0.86003 0.86419 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.49 9.58 71.23 0.68 -1.81 16 2 C -0.01 -0.40 6.86 43.31 0.30 -0.10 16 3 N -0.45 -20.72 9.40 -170.97 -1.61 -22.33 16 4 C -0.03 -1.38 6.74 41.96 0.28 -1.10 16 5 C 0.05 1.84 5.91 -19.84 -0.12 1.73 16 6 C -0.16 -5.21 9.66 22.63 0.22 -4.99 16 7 C 0.11 3.24 11.17 84.60 0.94 4.18 16 8 N -0.50 -15.81 10.30 -191.06 -1.97 -17.78 16 9 C 0.12 3.80 7.16 84.65 0.61 4.41 16 10 Br 0.00 -0.10 33.86 -20.37 -0.69 -0.79 16 11 C -0.16 -5.43 9.21 22.65 0.21 -5.22 16 12 C -0.12 -5.52 9.40 22.29 0.21 -5.31 16 13 C -0.17 -8.22 8.73 22.65 0.20 -8.02 16 14 C 0.05 2.41 5.58 -21.17 -0.12 2.29 16 15 C -0.44 -20.66 8.14 23.41 0.19 -20.47 16 16 H 0.10 4.36 6.87 -2.91 -0.02 4.34 16 17 C 0.03 1.51 5.19 85.30 0.44 1.95 16 18 N -0.80 -37.10 10.95 21.85 0.24 -36.86 16 19 Si 0.99 32.72 29.59 68.60 2.03 34.75 16 20 H -0.26 -8.28 7.11 99.48 0.71 -7.58 16 21 H -0.27 -8.59 7.11 99.48 0.71 -7.88 16 22 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 23 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.07 2.59 6.76 -2.39 -0.02 2.57 16 26 H 0.15 4.80 7.62 -2.91 -0.02 4.77 16 27 H 0.20 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.15 4.74 6.29 -2.91 -0.02 4.72 16 29 H 0.12 4.82 6.24 -2.92 -0.02 4.80 16 30 H 0.12 5.89 6.26 -2.92 -0.02 5.87 16 31 H 0.30 12.32 8.29 -92.71 -0.77 11.55 16 Total: -1.00 -54.68 291.42 3.22 -51.46 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 1.18 Total: 24.03 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.04 Total: -32.48 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -3.34 Total: -76.97 kcal Atomic # 14 Polarization: 32.72 SS G_CDS: 2.03 Total: 34.75 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -0.69 Total: -0.79 kcal Total: -54.68 3.22 -51.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241708920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.809 kcal (2) G-P(sol) polarization free energy of solvation -54.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds