Wall clock time and date at job start Tue Mar 31 2020 12:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39595 * 120.45266 * 156.99381 * 3 2 1 5 5 C 1.37701 * 120.18661 * 179.97438 * 4 3 2 6 6 C 1.39838 * 121.17079 * 359.97324 * 5 4 3 7 7 C 1.48282 * 119.53705 * 180.02562 * 6 5 4 8 8 C 1.39802 * 120.53108 * 309.72591 * 7 6 5 9 9 C 1.38361 * 118.34079 * 179.73674 * 8 7 6 10 10 C 1.38475 * 119.30653 * 0.53942 * 9 8 7 11 11 Cl 1.73601 * 119.48917 * 179.74813 * 10 9 8 12 12 N 1.32005 * 121.02247 * 359.71993 * 10 9 8 13 13 C 1.31862 * 121.81882 * 0.02562 * 12 10 9 14 14 Cl 1.73598 * 119.71460 * 179.97438 * 13 12 10 15 15 C 1.38623 * 120.92312 * 0.04964 * 6 5 4 16 16 C 1.40592 * 119.73434 * 359.69059 * 15 6 5 17 17 C 1.40844 * 120.55527 * 180.27459 * 16 15 6 18 18 H 1.08003 * 120.00264 * 155.30551 * 17 16 15 19 19 C 1.40232 * 119.99708 * 335.30533 * 17 16 15 20 20 N 1.30662 * 120.00092 * 342.52130 * 19 17 16 21 21 Si 1.86798 * 119.99796 * 162.52093 * 19 17 16 22 22 H 1.48504 * 109.47394 * 59.99836 * 21 19 17 23 23 H 1.48504 * 109.47321 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47193 * 299.99980 * 21 19 17 25 25 H 1.07998 * 119.90143 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.41625 * 180.02562 * 5 4 3 27 27 H 1.07993 * 120.83277 * 359.97438 * 8 7 6 28 28 H 1.08002 * 120.35294 * 180.26147 * 9 8 7 29 29 H 1.07995 * 120.12882 * 179.97438 * 15 6 5 30 30 H 0.97005 * 119.99551 * 185.03602 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2750 1.1086 -0.4703 5 6 4.6520 1.1036 -0.4673 6 6 5.3707 -0.0001 0.0026 7 6 6.8531 0.0336 -0.0102 8 6 7.5453 0.3954 -1.1697 9 6 8.9282 0.4170 -1.1294 10 6 9.5775 0.0718 0.0440 11 17 11.3126 0.0909 0.0979 12 7 8.8976 -0.2711 1.1223 13 6 7.5794 -0.3012 1.1326 14 17 6.7405 -0.7610 2.5813 15 6 4.7168 -1.1254 0.4798 16 6 3.3114 -1.1593 0.4994 17 6 2.6293 -2.2914 0.9859 18 1 1.6255 -2.1925 1.3722 19 6 3.2534 -3.5471 0.9687 20 7 4.2998 -3.7463 0.2120 21 14 2.5887 -4.9350 2.0276 22 1 1.1855 -5.2264 1.6383 23 1 3.4200 -6.1497 1.8307 24 1 2.6325 -4.5322 3.4564 25 1 2.7404 1.9722 -0.8375 26 1 5.1865 1.9677 -0.8337 27 1 7.0139 0.6553 -2.0732 28 1 9.4954 0.6958 -2.0051 29 1 5.2846 -1.9707 0.8393 30 1 4.6872 -4.6329 0.1438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243086054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:21 Heat of formation + Delta-G solvation = 48.809766 kcal Electronic energy + Delta-G solvation = -20311.994934 eV Core-core repulsion = 16929.851805 eV Total energy + Delta-G solvation = -3382.143130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 318.002 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41627 -39.36493 -37.87167 -37.46058 -36.98706 -35.91003 -34.17506 -32.82671 -31.67634 -30.09553 -27.55281 -25.35006 -24.82199 -22.87608 -22.61198 -19.50660 -18.89468 -18.64828 -18.01152 -17.33451 -16.54628 -16.07388 -15.75958 -15.50256 -15.07709 -14.65913 -14.52885 -14.42484 -14.29183 -13.56326 -13.48990 -13.36129 -13.28986 -13.10523 -12.82194 -12.70398 -12.40794 -12.22593 -12.18043 -12.15189 -11.72740 -11.49417 -11.22613 -10.98587 -10.83484 -10.01121 -9.45119 -9.05084 -8.82675 -6.50906 -0.47756 -0.03335 0.43694 0.52038 1.01397 1.04487 1.34979 1.43815 1.50650 2.06908 2.11165 2.25122 2.50809 2.67676 3.44139 3.54926 3.61624 3.69566 3.88513 4.01299 4.19094 4.45164 4.71262 4.78453 4.93041 4.98933 5.13807 5.22214 5.30311 5.46140 5.77389 5.95661 6.03346 6.14733 6.33822 6.44781 6.67146 6.78791 6.99983 8.07411 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.004573 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.880904 B = 6120.881266 C = 7333.355745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.304 3.696 3 C -0.202 4.202 4 C -0.026 4.026 5 C -0.214 4.214 6 C -0.024 4.024 7 C -0.062 4.062 8 C -0.035 4.035 9 C -0.131 4.131 10 C 0.167 3.833 11 Cl -0.017 7.017 12 N -0.498 5.498 13 C 0.178 3.822 14 Cl -0.024 7.024 15 C -0.140 4.140 16 C 0.127 3.873 17 C -0.462 4.462 18 H 0.070 0.930 19 C 0.050 3.950 20 N -0.783 5.783 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.257 1.257 24 H -0.259 1.259 25 H 0.130 0.870 26 H 0.138 0.862 27 H 0.187 0.813 28 H 0.193 0.807 29 H 0.122 0.878 30 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 4.962 -3.434 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.004 4.004 3 C -0.208 4.208 4 C -0.046 4.046 5 C -0.233 4.233 6 C -0.025 4.025 7 C -0.066 4.066 8 C -0.061 4.061 9 C -0.151 4.151 10 C 0.003 3.997 11 Cl 0.011 6.989 12 N -0.212 5.212 13 C 0.014 3.986 14 Cl 0.004 6.996 15 C -0.160 4.160 16 C 0.122 3.878 17 C -0.490 4.490 18 H 0.088 0.912 19 C -0.171 4.171 20 N -0.405 5.405 21 Si 0.786 3.214 22 H -0.190 1.190 23 H -0.180 1.180 24 H -0.183 1.183 25 H 0.148 0.852 26 H 0.156 0.844 27 H 0.204 0.796 28 H 0.210 0.790 29 H 0.140 0.860 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.888 4.527 -2.577 13.901 hybrid contribution -0.404 -0.819 0.257 0.949 sum 12.484 3.708 -2.320 13.228 Atomic orbital electron populations 1.81007 1.13351 1.11705 1.15135 1.26058 0.93019 0.90581 0.90752 1.17248 0.82865 1.01130 1.19565 1.20680 0.94059 0.94991 0.94895 1.20422 0.92745 0.98836 1.11284 1.18425 0.89190 0.95043 0.99879 1.19873 0.94595 0.98985 0.93115 1.22097 0.93207 0.93131 0.97642 1.22232 0.94625 0.99896 0.98325 1.21796 0.87856 0.99671 0.90420 1.98403 1.05438 1.96598 1.98422 1.66081 1.07814 1.16207 1.31059 1.21622 0.87983 0.99598 0.89407 1.98427 1.74652 1.90154 1.36329 1.21373 0.93160 0.97741 1.03701 1.18571 0.91987 0.90147 0.87143 1.19810 1.01248 0.93007 1.34924 0.91199 1.26617 0.93718 1.02167 0.94624 1.69658 1.17410 1.25792 1.27681 0.85465 0.79438 0.76930 0.79561 1.18991 1.18018 1.18299 0.85197 0.84432 0.79561 0.78971 0.86013 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.31 18.54 19.00 0.35 -24.96 16 2 C 0.30 13.96 14.29 88.33 1.26 15.23 16 3 C -0.20 -8.79 5.95 -19.54 -0.12 -8.90 16 4 C -0.03 -0.92 9.74 22.47 0.22 -0.70 16 5 C -0.21 -6.93 9.45 22.53 0.21 -6.72 16 6 C -0.02 -0.85 5.13 -20.13 -0.10 -0.96 16 7 C -0.06 -1.94 5.46 -19.93 -0.11 -2.05 16 8 C -0.04 -0.79 9.64 22.68 0.22 -0.57 16 9 C -0.13 -2.50 9.86 22.36 0.22 -2.28 16 10 C 0.17 4.17 7.27 84.72 0.62 4.79 16 11 Cl -0.02 -0.36 29.10 -2.72 -0.08 -0.44 16 12 N -0.50 -15.73 10.31 -176.72 -1.82 -17.55 16 13 C 0.18 5.97 7.24 84.99 0.62 6.59 16 14 Cl -0.02 -0.87 26.11 -2.72 -0.07 -0.94 16 15 C -0.14 -6.08 6.80 22.94 0.16 -5.92 16 16 C 0.13 5.97 5.73 -19.90 -0.11 5.85 16 17 C -0.46 -22.70 8.57 23.39 0.20 -22.50 16 18 H 0.07 3.55 7.38 -2.91 -0.02 3.53 16 19 C 0.05 2.26 5.16 85.35 0.44 2.70 16 20 N -0.78 -35.50 10.96 21.87 0.24 -35.26 16 21 Si 0.97 35.52 29.60 68.60 2.03 37.55 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 24 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 25 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 26 H 0.14 3.44 8.02 -2.91 -0.02 3.42 16 27 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.12 5.57 5.24 -2.91 -0.02 5.56 16 30 H 0.30 12.26 8.30 -92.70 -0.77 11.49 16 Total: -1.00 -55.77 309.31 5.59 -50.18 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.22 Total: 6.85 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 3.72 Total: -15.45 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.23 Total: -77.76 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.15 Total: -1.38 kcal Total: -55.77 5.59 -50.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243086054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.991 kcal (2) G-P(sol) polarization free energy of solvation -55.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds