Wall clock time and date at job start Tue Mar 31 2020 12:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39116 * 120.57022 * 36.97925 * 3 2 1 5 5 C 1.39326 * 119.80747 * 180.25543 * 4 3 2 6 6 C 1.48077 * 119.49547 * 179.75223 * 5 4 3 7 7 C 1.39945 * 120.90856 * 359.70425 * 6 5 4 8 8 C 1.38090 * 119.01444 * 179.70458 * 7 6 5 9 9 Cl 1.73593 * 119.55791 * 180.29432 * 8 7 6 10 10 N 1.32043 * 120.88297 * 0.57718 * 8 7 6 11 11 C 1.32048 * 122.01832 * 359.71764 * 10 8 7 12 12 Cl 1.73604 * 119.55461 * 179.97438 * 11 10 8 13 13 C 1.38082 * 120.88708 * 359.97438 * 11 10 8 14 14 C 1.39933 * 121.01114 * 359.73480 * 5 4 3 15 15 C 1.36046 * 121.19333 * 359.97438 * 14 5 4 16 16 C 1.41017 * 120.10649 * 359.97438 * 15 14 5 17 17 C 1.40485 * 120.49567 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00491 * 154.65041 * 17 16 15 19 19 C 1.40344 * 119.99819 * 334.65163 * 17 16 15 20 20 N 1.30609 * 120.00134 * 334.61863 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 154.62288 * 19 17 16 22 22 H 1.48506 * 109.47180 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47155 * 299.99776 * 21 19 17 24 24 H 1.48500 * 109.47152 * 59.99875 * 21 19 17 25 25 H 1.07997 * 120.09358 * 359.97438 * 4 3 2 26 26 H 1.07996 * 120.49148 * 359.97438 * 7 6 5 27 27 H 1.08002 * 120.49589 * 180.02562 * 13 11 10 28 28 H 1.07996 * 119.40692 * 179.97438 * 14 5 4 29 29 H 1.08000 * 119.94767 * 179.97438 * 15 14 5 30 30 H 0.97004 * 119.99970 * 354.19036 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2760 -0.9559 -0.7205 5 6 4.6692 -0.9437 -0.7050 6 6 5.4158 -1.9685 -1.4700 7 6 4.7413 -2.9518 -2.2026 8 6 5.4765 -3.8847 -2.9068 9 17 4.6543 -5.1060 -3.8265 10 7 6.7966 -3.8636 -2.8855 11 6 7.4714 -2.9570 -2.2025 12 17 9.2071 -2.9893 -2.2188 13 6 6.8150 -1.9836 -1.4756 14 6 5.3737 0.0223 0.0220 15 6 4.7229 0.9801 0.7361 16 6 3.3132 1.0140 0.7537 17 6 2.6328 1.9991 1.4887 18 1 1.6336 2.2925 1.2027 19 6 3.2517 2.6019 2.5947 20 7 4.1878 1.9656 3.2465 21 14 2.7366 4.3143 3.1347 22 1 3.5355 4.7213 4.3186 23 1 2.9698 5.2741 2.0259 24 1 1.2946 4.3086 3.4894 25 1 2.7473 -1.7085 -1.2865 26 1 3.6618 -2.9779 -2.2204 27 1 7.3733 -1.2449 -0.9196 28 1 6.4535 0.0073 0.0162 29 1 5.2868 1.7158 1.2904 30 1 4.3969 1.0459 3.0201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243367521.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:42 Heat of formation + Delta-G solvation = 40.594366 kcal Electronic energy + Delta-G solvation = -19815.957614 eV Core-core repulsion = 16433.458238 eV Total energy + Delta-G solvation = -3382.499376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 318.002 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41525 -39.72080 -37.92695 -37.58065 -37.13856 -36.46609 -34.06403 -32.41291 -31.52330 -30.93515 -27.68756 -25.29500 -24.63652 -23.61364 -22.40696 -20.32875 -19.35751 -18.02948 -17.73651 -17.23620 -16.38312 -16.33703 -15.93710 -15.70240 -15.41388 -15.16269 -14.77915 -14.29952 -14.21572 -13.79251 -13.60315 -13.49934 -13.29268 -13.08768 -12.96935 -12.69931 -12.51945 -12.21783 -12.19231 -12.00335 -11.70181 -11.65853 -11.30155 -10.93411 -10.87503 -9.97190 -9.81262 -9.56042 -9.28395 -6.74024 -0.35979 -0.25827 0.32311 0.41591 0.93656 0.94142 1.51466 1.60584 1.80046 1.92757 2.15471 2.21462 2.48780 2.64670 3.29926 3.43828 3.51659 3.73944 3.88817 3.92688 4.00259 4.27406 4.46062 4.57721 4.73498 4.79742 5.03901 5.16588 5.21272 5.42855 5.52701 5.58921 5.77580 5.90458 6.04526 6.39536 6.40201 6.51700 6.84453 7.72449 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003519 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.152178 B = 7955.168304 C = 9599.969443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.301 3.699 3 C -0.203 4.203 4 C 0.026 3.974 5 C -0.217 4.217 6 C 0.080 3.920 7 C -0.176 4.176 8 C 0.195 3.805 9 Cl -0.021 7.021 10 N -0.521 5.521 11 C 0.195 3.805 12 Cl -0.018 7.018 13 C -0.170 4.170 14 C -0.021 4.021 15 C -0.225 4.225 16 C 0.114 3.886 17 C -0.478 4.478 18 H 0.076 0.924 19 C 0.012 3.988 20 N -0.759 5.759 21 Si 1.108 2.892 22 H -0.262 1.262 23 H -0.256 1.256 24 H -0.266 1.266 25 H 0.131 0.869 26 H 0.162 0.838 27 H 0.168 0.832 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.752 -4.232 -5.532 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.008 4.008 3 C -0.209 4.209 4 C 0.005 3.995 5 C -0.219 4.219 6 C 0.072 3.928 7 C -0.197 4.197 8 C 0.032 3.968 9 Cl 0.008 6.992 10 N -0.236 5.236 11 C 0.032 3.968 12 Cl 0.010 6.990 13 C -0.191 4.191 14 C -0.040 4.040 15 C -0.244 4.244 16 C 0.108 3.892 17 C -0.504 4.504 18 H 0.094 0.906 19 C -0.212 4.212 20 N -0.378 5.378 21 Si 0.924 3.076 22 H -0.186 1.186 23 H -0.180 1.180 24 H -0.191 1.191 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.185 0.815 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.941 -3.857 -4.978 9.372 hybrid contribution -0.380 -0.992 -0.773 1.314 sum 6.561 -4.849 -5.751 9.982 Atomic orbital electron populations 1.81053 1.13145 1.11882 1.13775 1.25885 0.92837 0.91183 0.90935 1.16825 0.83030 1.04353 1.16717 1.20915 0.93061 0.93615 0.91937 1.17581 0.91608 1.02107 1.10626 1.19010 0.91947 0.91289 0.90535 1.22047 1.02619 0.95403 0.99664 1.21268 0.88232 0.92122 0.95165 1.98401 1.75166 1.53550 1.72104 1.66084 1.08647 1.26301 1.22570 1.21309 0.87640 0.92504 0.95370 1.98402 1.05556 1.97812 1.97199 1.22056 0.94065 1.00618 1.02375 1.20724 0.99685 0.91625 0.91953 1.20776 0.92840 1.03072 1.07692 1.18811 0.92501 0.88510 0.89377 1.21143 1.03265 1.15487 1.10476 0.90616 1.28507 0.91479 1.08639 0.92563 1.70490 1.20605 1.13626 1.33109 0.83080 0.77456 0.69001 0.78067 1.18572 1.18016 1.19116 0.85087 0.82094 0.81506 0.84828 0.86933 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.26 18.54 19.01 0.35 -22.90 16 2 C 0.30 12.89 14.30 88.33 1.26 14.15 16 3 C -0.20 -8.20 5.93 -19.63 -0.12 -8.31 16 4 C 0.03 0.87 9.14 22.74 0.21 1.08 16 5 C -0.22 -6.90 5.88 -19.99 -0.12 -7.02 16 6 C 0.08 2.24 5.91 -19.84 -0.12 2.12 16 7 C -0.18 -4.67 9.25 22.65 0.21 -4.46 16 8 C 0.20 5.32 7.27 84.63 0.61 5.93 16 9 Cl -0.02 -0.49 29.10 -2.72 -0.08 -0.57 16 10 N -0.52 -15.14 10.30 -177.93 -1.83 -16.97 16 11 C 0.19 5.20 7.27 84.62 0.61 5.81 16 12 Cl -0.02 -0.42 29.10 -2.72 -0.08 -0.50 16 13 C -0.17 -4.37 9.25 22.64 0.21 -4.16 16 14 C -0.02 -0.68 9.32 22.17 0.21 -0.47 16 15 C -0.22 -8.61 7.88 22.44 0.18 -8.43 16 16 C 0.11 4.85 5.47 -19.86 -0.11 4.74 16 17 C -0.48 -21.24 8.49 23.33 0.20 -21.04 16 18 H 0.08 3.49 7.45 -2.91 -0.02 3.47 16 19 C 0.01 0.51 4.95 85.39 0.42 0.93 16 20 N -0.76 -32.45 12.30 21.89 0.27 -32.18 16 21 Si 1.11 35.40 30.01 68.60 2.06 37.46 16 22 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 23 H -0.26 -7.70 7.11 99.48 0.71 -6.99 16 24 H -0.27 -8.33 7.11 99.48 0.71 -7.63 16 25 H 0.13 3.77 6.22 -2.91 -0.02 3.75 16 26 H 0.16 3.75 6.28 -2.91 -0.02 3.73 16 27 H 0.17 3.60 6.26 -2.91 -0.02 3.59 16 28 H 0.13 3.49 6.18 -2.91 -0.02 3.47 16 29 H 0.11 4.42 6.49 -2.91 -0.02 4.40 16 30 H 0.30 13.07 6.68 -92.71 -0.62 12.46 16 Total: -1.00 -47.70 306.54 5.74 -41.95 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.39 Total: 12.83 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 3.66 Total: -19.12 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.21 Total: -72.06 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.06 Total: 37.46 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.16 Total: -1.07 kcal Total: -47.70 5.74 -41.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243367521.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.549 kcal (2) G-P(sol) polarization free energy of solvation -47.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds