Wall clock time and date at job start Tue Mar 31 2020 12:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39573 * 120.45350 * 187.35330 * 3 2 1 5 5 C 1.37728 * 120.18491 * 180.02562 * 4 3 2 6 6 C 1.39800 * 121.17461 * 359.97438 * 5 4 3 7 7 C 1.48341 * 119.53884 * 180.02562 * 6 5 4 8 8 C 1.39765 * 120.89358 * 179.72127 * 7 6 5 9 9 C 1.38125 * 119.03286 * 179.77903 * 8 7 6 10 10 Cl 1.73599 * 119.56728 * 180.27152 * 9 8 7 11 11 N 1.32028 * 120.86998 * 0.50141 * 9 8 7 12 12 C 1.32032 * 121.97462 * 359.74845 * 11 9 8 13 13 Cl 1.73601 * 119.56379 * 180.02562 * 12 11 9 14 14 C 1.38118 * 120.86746 * 359.97438 * 12 11 9 15 15 C 1.38588 * 120.92773 * 0.02562 * 6 5 4 16 16 C 1.40631 * 119.73148 * 359.97438 * 15 6 5 17 17 C 1.40838 * 120.55324 * 179.97438 * 16 15 6 18 18 H 1.07992 * 119.99736 * 155.82585 * 17 16 15 19 19 C 1.40242 * 119.99893 * 335.82108 * 17 16 15 20 20 N 1.30665 * 120.00116 * 341.86370 * 19 17 16 21 21 Si 1.86792 * 120.00103 * 161.86079 * 19 17 16 22 22 H 1.48504 * 109.47217 * 89.99854 * 21 19 17 23 23 H 1.48500 * 109.47507 * 210.00035 * 21 19 17 24 24 H 1.48503 * 109.47456 * 330.00315 * 21 19 17 25 25 H 1.07998 * 119.90349 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.41228 * 179.71608 * 5 4 3 27 27 H 1.07992 * 120.48209 * 359.97438 * 8 7 6 28 28 H 1.08005 * 120.47997 * 180.02562 * 14 12 11 29 29 H 1.08000 * 120.13240 * 179.97438 * 15 6 5 30 30 H 0.96995 * 119.99647 * 185.04324 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2748 1.1942 0.1540 5 6 4.6521 1.1885 0.1526 6 6 5.3707 -0.0008 -0.0009 7 6 6.8536 0.0350 0.0036 8 6 7.6002 -1.1376 -0.1419 9 6 8.9792 -1.0592 -0.1368 10 17 9.9201 -2.5061 -0.3236 11 7 9.5913 0.1010 0.0128 12 6 8.9230 1.2304 0.1582 13 17 9.7918 2.7211 0.3498 14 6 7.5419 1.2415 0.1588 15 6 4.7170 -1.2128 -0.1573 16 6 3.3113 -1.2516 -0.1616 17 6 2.6293 -2.4736 -0.3199 18 1 1.6215 -2.5817 0.0528 19 6 3.2589 -3.5501 -0.9614 20 7 4.3059 -3.3400 -1.7145 21 14 2.6009 -5.2841 -0.7394 22 1 1.5925 -5.5694 -1.7915 23 1 3.7188 -6.2556 -0.8488 24 1 1.9683 -5.4061 0.5986 25 1 2.7402 2.1250 0.2737 26 1 5.1865 2.1200 0.2681 27 1 7.1060 -2.0906 -0.2598 28 1 7.0015 2.1690 0.2778 29 1 5.2850 -2.1238 -0.2753 30 1 4.6972 -4.0722 -2.2161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243367860.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:35 Heat of formation + Delta-G solvation = 48.920693 kcal Electronic energy + Delta-G solvation = -20038.002124 eV Core-core repulsion = 16655.863805 eV Total energy + Delta-G solvation = -3382.138319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 318.002 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49133 -39.44387 -37.94696 -37.58487 -37.02492 -35.98632 -34.41348 -32.26894 -31.55289 -30.76231 -27.63284 -25.65207 -24.86406 -22.71301 -22.63064 -19.65978 -19.08444 -18.37555 -17.83607 -17.14829 -16.82990 -15.99155 -15.90107 -15.70957 -15.33047 -14.88393 -14.55759 -14.46585 -13.87191 -13.60847 -13.51270 -13.48554 -13.20259 -13.10911 -12.95940 -12.76867 -12.60379 -12.24776 -12.21532 -12.11414 -11.88109 -11.44418 -11.34663 -11.00471 -10.94166 -9.98984 -9.53266 -9.13123 -8.84638 -6.54291 -0.57208 -0.30844 0.37843 0.65479 0.90735 0.99450 1.38687 1.47468 1.53247 2.05224 2.12357 2.17147 2.61065 2.67550 3.26900 3.59814 3.65255 3.66365 3.83786 3.92078 4.03797 4.39983 4.52947 4.70924 4.82522 4.99000 5.08528 5.16118 5.28221 5.42333 5.72155 5.90115 5.97626 6.10906 6.30809 6.37891 6.62624 6.72599 6.97657 8.04897 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.004544 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.151673 B = 6160.147117 C = 8363.035951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.304 3.696 3 C -0.200 4.200 4 C -0.023 4.023 5 C -0.220 4.220 6 C -0.028 4.028 7 C 0.041 3.959 8 C -0.147 4.147 9 C 0.188 3.812 10 Cl -0.016 7.016 11 N -0.501 5.501 12 C 0.187 3.813 13 Cl -0.009 7.009 14 C -0.139 4.139 15 C -0.146 4.146 16 C 0.124 3.876 17 C -0.457 4.457 18 H 0.072 0.928 19 C 0.050 3.950 20 N -0.780 5.780 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.253 1.253 24 H -0.262 1.262 25 H 0.132 0.868 26 H 0.142 0.858 27 H 0.155 0.845 28 H 0.180 0.820 29 H 0.129 0.871 30 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.822 3.447 1.921 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.005 4.005 3 C -0.207 4.207 4 C -0.044 4.044 5 C -0.239 4.239 6 C -0.029 4.029 7 C 0.033 3.967 8 C -0.168 4.168 9 C 0.025 3.975 10 Cl 0.012 6.988 11 N -0.216 5.216 12 C 0.023 3.977 13 Cl 0.019 6.981 14 C -0.159 4.159 15 C -0.166 4.166 16 C 0.119 3.881 17 C -0.485 4.485 18 H 0.090 0.910 19 C -0.172 4.172 20 N -0.402 5.402 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.177 1.177 24 H -0.186 1.186 25 H 0.150 0.850 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.197 0.803 29 H 0.147 0.853 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.378 3.352 1.802 11.998 hybrid contribution -0.648 -0.987 -0.168 1.192 sum 10.730 2.366 1.634 11.109 Atomic orbital electron populations 1.81018 1.13346 1.10636 1.15946 1.26024 0.92987 0.90782 0.90714 1.17249 0.82942 0.95269 1.25192 1.20716 0.94035 0.95117 0.94508 1.20525 0.92940 0.97026 1.13403 1.18450 0.89050 0.94650 1.00752 1.19311 0.93517 0.91813 0.92038 1.22161 0.91858 1.01297 1.01467 1.21251 0.88620 0.87998 0.99617 1.98404 1.73800 1.31246 1.95343 1.66131 1.42472 0.97515 1.15471 1.21393 0.89014 0.87925 0.99360 1.98408 1.77735 1.26685 1.95254 1.22207 0.91936 1.00570 1.01195 1.21445 0.93413 0.97013 1.04685 1.18579 0.91971 0.90364 0.87194 1.19879 1.01000 0.95954 1.31637 0.91029 1.26657 0.93730 1.04601 0.92178 1.69641 1.17199 1.36887 1.16475 0.85332 0.79451 0.76099 0.80012 1.19123 1.17658 1.18572 0.85036 0.84047 0.82748 0.80271 0.85310 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.54 18.54 19.00 0.35 -24.19 16 2 C 0.30 13.51 14.28 88.33 1.26 14.77 16 3 C -0.20 -8.42 5.94 -19.55 -0.12 -8.53 16 4 C -0.02 -0.80 9.74 22.47 0.22 -0.58 16 5 C -0.22 -6.90 9.39 22.53 0.21 -6.69 16 6 C -0.03 -0.97 5.86 -20.13 -0.12 -1.09 16 7 C 0.04 1.25 5.91 -19.85 -0.12 1.13 16 8 C -0.15 -4.45 9.24 22.61 0.21 -4.24 16 9 C 0.19 5.49 7.27 84.64 0.62 6.10 16 10 Cl -0.02 -0.43 29.10 -2.72 -0.08 -0.51 16 11 N -0.50 -14.71 10.30 -177.90 -1.83 -16.54 16 12 C 0.19 4.90 7.27 84.63 0.61 5.51 16 13 Cl -0.01 -0.20 29.10 -2.72 -0.08 -0.28 16 14 C -0.14 -3.51 9.25 22.61 0.21 -3.31 16 15 C -0.15 -5.96 8.09 22.94 0.19 -5.77 16 16 C 0.12 5.58 5.74 -19.90 -0.11 5.46 16 17 C -0.46 -21.32 8.58 23.39 0.20 -21.12 16 18 H 0.07 3.47 7.37 -2.91 -0.02 3.45 16 19 C 0.05 2.12 5.15 85.35 0.44 2.56 16 20 N -0.78 -32.77 10.96 21.88 0.24 -32.53 16 21 Si 0.97 33.09 29.60 68.60 2.03 35.12 16 22 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 23 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 24 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 25 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 26 H 0.14 3.35 6.19 -2.91 -0.02 3.34 16 27 H 0.15 4.79 6.28 -2.91 -0.02 4.78 16 28 H 0.18 3.55 6.27 -2.91 -0.02 3.53 16 29 H 0.13 5.31 4.33 -2.91 -0.01 5.30 16 30 H 0.30 11.33 8.30 -92.71 -0.77 10.56 16 Total: -1.00 -49.66 307.42 5.57 -44.09 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.24 Total: 10.62 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.70 Total: -15.79 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.24 Total: -73.26 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.12 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.16 Total: -0.79 kcal Total: -49.66 5.57 -44.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243367860.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.013 kcal (2) G-P(sol) polarization free energy of solvation -49.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds