Wall clock time and date at job start Tue Mar 31 2020 12:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39114 * 120.56200 * 272.85119 * 3 2 1 5 5 C 1.39354 * 119.80342 * 180.31919 * 4 3 2 6 6 C 1.48041 * 119.49817 * 179.70943 * 5 4 3 7 7 C 1.40014 * 120.92531 * 309.70008 * 6 5 4 8 8 C 1.37876 * 119.04409 * 179.79789 * 7 6 5 9 9 N 1.31974 * 120.95237 * 0.48698 * 8 7 6 10 10 C 1.31984 * 122.05638 * 359.74013 * 9 8 7 11 11 Cl 1.73592 * 119.58079 * 179.97438 * 10 9 8 12 12 C 1.38296 * 120.84273 * 0.02562 * 10 9 8 13 13 Cl 1.73591 * 120.52436 * 179.97438 * 12 10 9 14 14 C 1.39955 * 121.00302 * 359.69367 * 5 4 3 15 15 C 1.36038 * 121.19589 * 359.97438 * 14 5 4 16 16 C 1.41027 * 120.10481 * 0.02792 * 15 14 5 17 17 C 1.40471 * 120.49056 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00248 * 154.64459 * 17 16 15 19 19 C 1.40349 * 119.99792 * 334.64602 * 17 16 15 20 20 N 1.30604 * 119.99942 * 334.61863 * 19 17 16 21 21 Si 1.86798 * 119.99487 * 154.62217 * 19 17 16 22 22 H 1.48512 * 109.46751 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47272 * 299.99779 * 21 19 17 24 24 H 1.48501 * 109.47595 * 60.00117 * 21 19 17 25 25 H 1.07997 * 120.10067 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.47918 * 0.02562 * 7 6 5 27 27 H 1.08001 * 119.52582 * 180.22789 * 8 7 6 28 28 H 1.08001 * 119.40331 * 179.97438 * 14 5 4 29 29 H 1.07997 * 119.94956 * 180.02562 * 15 14 5 30 30 H 0.97004 * 120.00451 * 354.19152 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2754 -0.0586 1.1964 5 6 4.6688 -0.0504 1.1783 6 6 5.4148 -0.1072 2.4558 7 6 5.1097 0.7664 3.5066 8 6 5.8264 0.6768 4.6811 9 7 6.7943 -0.2095 4.8196 10 6 7.1188 -1.0491 3.8543 11 17 8.4039 -2.1887 4.1058 12 6 6.4487 -1.0319 2.6447 13 17 6.8827 -2.1395 1.3805 14 6 5.3737 0.0105 -0.0292 15 6 4.7234 0.0630 -1.2229 16 6 3.3137 0.0573 -1.2612 17 6 2.6338 0.1118 -2.4893 18 1 1.6350 -0.2906 -2.5719 19 6 3.2526 0.6890 -3.6089 20 7 4.1878 1.5865 -3.4479 21 14 2.7386 0.1738 -5.3293 22 1 3.5373 0.9256 -6.3305 23 1 2.9733 -1.2825 -5.5007 24 1 1.2964 0.4691 -5.5244 25 1 2.7463 -0.1053 2.1367 26 1 4.3219 1.4975 3.4001 27 1 5.5951 1.3443 5.4980 28 1 6.4536 0.0159 -0.0131 29 1 5.2875 0.1090 -2.1427 30 1 4.3963 1.9158 -2.5597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243416470.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:45 Heat of formation + Delta-G solvation = 41.595541 kcal Electronic energy + Delta-G solvation = -20159.268683 eV Core-core repulsion = 16776.812721 eV Total energy + Delta-G solvation = -3382.455962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 318.002 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34790 -39.68110 -37.76764 -37.63249 -37.11012 -36.38485 -33.92557 -32.09702 -31.70094 -30.91393 -27.64445 -24.88874 -24.60357 -23.90402 -22.43426 -20.25520 -19.32212 -18.02551 -17.53965 -17.10384 -16.75614 -16.49162 -15.80766 -15.55368 -15.36398 -15.08547 -14.73040 -14.34087 -14.11440 -13.80757 -13.65836 -13.43659 -13.12901 -13.05988 -12.82905 -12.70085 -12.61273 -12.51409 -12.01535 -11.95884 -11.72576 -11.62276 -11.10179 -10.75948 -10.73982 -9.91030 -9.76861 -9.57728 -9.29516 -6.72370 -0.25615 -0.21027 0.32979 0.63407 0.86135 1.03346 1.49947 1.59179 1.78561 1.94744 2.19999 2.22884 2.50544 2.58567 3.28947 3.40511 3.53738 3.65530 3.79583 4.03988 4.12490 4.31702 4.38631 4.66453 4.82001 4.85624 5.02265 5.19302 5.34008 5.45075 5.54375 5.61780 5.77402 5.93139 6.08236 6.44188 6.56229 6.56989 6.86900 7.76219 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.003893 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.945732 B = 7191.136955 C = 8073.892846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.303 3.697 3 C -0.206 4.206 4 C 0.027 3.973 5 C -0.215 4.215 6 C 0.056 3.944 7 C -0.157 4.157 8 C 0.130 3.870 9 N -0.495 5.495 10 C 0.175 3.825 11 Cl -0.020 7.020 12 C -0.096 4.096 13 Cl -0.039 7.039 14 C -0.014 4.014 15 C -0.225 4.225 16 C 0.119 3.881 17 C -0.491 4.491 18 H 0.073 0.927 19 C 0.013 3.987 20 N -0.766 5.766 21 Si 1.107 2.893 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.265 1.265 25 H 0.130 0.870 26 H 0.172 0.828 27 H 0.210 0.790 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -1.379 8.904 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.006 4.006 3 C -0.212 4.212 4 C 0.006 3.994 5 C -0.217 4.217 6 C 0.048 3.952 7 C -0.177 4.177 8 C -0.026 4.026 9 N -0.208 5.208 10 C 0.011 3.989 11 Cl 0.008 6.992 12 C -0.126 4.126 13 Cl -0.010 7.010 14 C -0.033 4.033 15 C -0.245 4.245 16 C 0.113 3.887 17 C -0.517 4.517 18 H 0.092 0.908 19 C -0.211 4.211 20 N -0.386 5.386 21 Si 0.924 3.076 22 H -0.186 1.186 23 H -0.183 1.183 24 H -0.189 1.189 25 H 0.148 0.852 26 H 0.189 0.811 27 H 0.226 0.774 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.882 -1.337 8.037 10.665 hybrid contribution -0.174 -0.457 0.666 0.826 sum 6.708 -1.794 8.703 11.134 Atomic orbital electron populations 1.81040 1.13128 1.15818 1.10188 1.25868 0.92804 0.90834 0.91084 1.16794 0.82991 1.26997 0.94404 1.20731 0.92353 0.90894 0.95417 1.17536 0.91718 1.21935 0.90462 1.19141 0.90774 0.90976 0.94311 1.22744 1.02617 0.99685 0.92662 1.23284 0.88222 0.93436 0.97619 1.67161 1.17875 1.05543 1.30180 1.21432 0.93199 0.94644 0.89644 1.98399 1.47210 1.56601 1.96943 1.21937 1.01241 0.98240 0.91228 1.98380 1.91892 1.60479 1.50272 1.20523 0.98621 0.92819 0.91308 1.20677 0.92999 1.13337 0.97451 1.18736 0.92149 0.87046 0.90770 1.21033 1.03317 1.31743 0.95573 0.90848 1.28472 0.91483 0.91856 1.09245 1.70481 1.21135 1.16689 1.30263 0.83097 0.77517 0.78095 0.68939 1.18587 1.18268 1.18940 0.85195 0.81076 0.77364 0.87009 0.87584 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.86 18.54 19.00 0.35 -23.51 16 2 C 0.30 13.32 14.30 88.33 1.26 14.59 16 3 C -0.21 -8.60 5.93 -19.63 -0.12 -8.71 16 4 C 0.03 0.94 9.23 22.75 0.21 1.15 16 5 C -0.21 -7.20 5.19 -19.99 -0.10 -7.30 16 6 C 0.06 1.61 5.47 -19.82 -0.11 1.50 16 7 C -0.16 -3.44 9.62 22.61 0.22 -3.22 16 8 C 0.13 2.53 11.17 84.59 0.94 3.48 16 9 N -0.50 -12.51 10.32 -186.92 -1.93 -14.44 16 10 C 0.18 4.80 7.27 84.68 0.62 5.42 16 11 Cl -0.02 -0.51 28.12 -2.72 -0.08 -0.58 16 12 C -0.10 -2.78 6.30 22.71 0.14 -2.64 16 13 Cl -0.04 -1.16 25.19 -2.72 -0.07 -1.23 16 14 C -0.01 -0.49 8.11 22.17 0.18 -0.31 16 15 C -0.23 -9.39 7.88 22.44 0.18 -9.22 16 16 C 0.12 5.32 5.46 -19.86 -0.11 5.21 16 17 C -0.49 -22.90 8.49 23.33 0.20 -22.70 16 18 H 0.07 3.55 7.45 -2.91 -0.02 3.53 16 19 C 0.01 0.56 4.95 85.39 0.42 0.98 16 20 N -0.77 -34.55 12.30 21.89 0.27 -34.28 16 21 Si 1.11 37.48 30.01 68.60 2.06 39.54 16 22 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 23 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 24 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 25 H 0.13 3.84 8.04 -2.91 -0.02 3.81 16 26 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 27 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.11 3.78 7.16 -2.91 -0.02 3.76 16 29 H 0.11 4.60 6.48 -2.91 -0.02 4.58 16 30 H 0.30 13.73 6.68 -92.71 -0.62 13.11 16 Total: -1.00 -51.70 307.11 5.91 -45.79 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.37 Total: 10.50 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.93 Total: -21.78 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.31 Total: -72.24 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.06 Total: 39.54 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.14 Total: -1.81 kcal Total: -51.70 5.91 -45.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243416470.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.386 kcal (2) G-P(sol) polarization free energy of solvation -51.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds