Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39573 * 120.45335 * 152.51295 * 3 2 1 5 5 C 1.37725 * 120.18533 * 180.27394 * 4 3 2 6 6 C 1.39816 * 121.17360 * 359.48926 * 5 4 3 7 7 C 1.48314 * 119.54018 * 180.23761 * 6 5 4 8 8 C 1.39841 * 120.90524 * 129.98988 * 7 6 5 9 9 C 1.37923 * 119.06235 * 179.73302 * 8 7 6 10 10 N 1.31954 * 120.93177 * 0.55672 * 9 8 7 11 11 C 1.31971 * 122.01084 * 359.72415 * 10 9 8 12 12 Cl 1.73606 * 119.58600 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.83018 * 359.97438 * 11 10 9 14 14 Cl 1.73598 * 120.51227 * 180.02562 * 13 11 10 15 15 C 1.38596 * 120.92182 * 0.51861 * 6 5 4 16 16 C 1.40628 * 119.73555 * 359.74418 * 15 6 5 17 17 C 1.40830 * 120.55602 * 180.02562 * 16 15 6 18 18 H 1.07995 * 120.00415 * 155.91117 * 17 16 15 19 19 C 1.40243 * 119.99777 * 335.91200 * 17 16 15 20 20 N 1.30661 * 120.00020 * 341.76865 * 19 17 16 21 21 Si 1.86799 * 120.00171 * 161.76942 * 19 17 16 22 22 H 1.48504 * 109.46929 * 59.99547 * 21 19 17 23 23 H 1.48495 * 109.47452 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47154 * 299.99953 * 21 19 17 25 25 H 1.08001 * 119.90538 * 0.02562 * 4 3 2 26 26 H 1.08007 * 119.41224 * 179.74450 * 5 4 3 27 27 H 1.07996 * 120.46287 * 359.97438 * 8 7 6 28 28 H 1.07998 * 119.53452 * 180.30051 * 9 8 7 29 29 H 1.08003 * 120.13184 * 179.72447 * 15 6 5 30 30 H 0.97000 * 119.99743 * 185.04811 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 1.0683 -0.5553 5 6 4.6522 1.0606 -0.5574 6 6 5.3708 -0.0011 0.0005 7 6 6.8535 0.0305 -0.0167 8 6 7.5906 -0.2087 1.1473 9 6 8.9681 -0.1754 1.0868 10 7 9.5910 0.0883 -0.0462 11 6 8.9350 0.3254 -1.1665 12 17 9.8186 0.6663 -2.6215 13 6 7.5522 0.3057 -1.1960 14 17 6.6976 0.6182 -2.6744 15 6 4.7170 -1.0853 0.5643 16 6 3.3112 -1.1198 0.5825 17 6 2.6292 -2.2126 1.1514 18 1 1.6207 -2.0887 1.5173 19 6 3.2596 -3.4620 1.2428 20 7 4.3068 -3.7209 0.5055 21 14 2.6022 -4.7562 2.4186 22 1 1.2004 -5.0871 2.0570 23 1 3.4388 -5.9796 2.3263 24 1 2.6443 -4.2307 3.8069 25 1 2.7404 1.9010 -0.9882 26 1 5.1866 1.8914 -0.9942 27 1 7.0883 -0.4203 2.0797 28 1 9.5450 -0.3638 1.9801 29 1 5.2848 -1.9006 0.9878 30 1 4.6986 -4.6082 0.5141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243416516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = 49.143875 kcal Electronic energy + Delta-G solvation = -20320.204486 eV Core-core repulsion = 16938.075845 eV Total energy + Delta-G solvation = -3382.128642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 318.002 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38968 -39.41936 -37.77448 -37.62647 -37.01517 -35.94707 -34.26621 -32.02106 -31.66388 -30.74984 -27.57589 -25.61527 -24.63864 -22.85206 -22.69876 -19.57361 -19.06844 -18.28108 -17.82725 -17.25906 -16.87371 -16.03495 -15.76430 -15.51232 -15.24660 -15.05553 -14.55752 -14.48485 -13.83188 -13.57744 -13.48271 -13.43716 -13.28025 -12.95054 -12.81424 -12.78630 -12.61323 -12.49894 -12.16904 -11.90525 -11.88648 -11.55720 -11.24252 -10.78841 -10.70258 -9.91216 -9.52246 -9.20976 -8.84888 -6.53673 -0.35905 -0.27374 0.47941 0.64602 0.99728 1.00559 1.38695 1.47765 1.53378 2.04645 2.13429 2.26011 2.52905 2.65476 3.28619 3.54597 3.58157 3.65527 3.74674 4.00589 4.25127 4.39681 4.54931 4.70454 4.93390 4.95882 5.10816 5.22041 5.31311 5.41579 5.71866 5.90351 5.97161 6.09941 6.37837 6.52578 6.63364 6.73625 6.97152 8.05680 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.004609 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.974450 B = 6073.568053 C = 7268.291998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.304 3.696 3 C -0.201 4.201 4 C -0.025 4.025 5 C -0.213 4.213 6 C -0.024 4.024 7 C 0.027 3.973 8 C -0.145 4.145 9 C 0.130 3.870 10 N -0.486 5.486 11 C 0.172 3.828 12 Cl -0.015 7.015 13 C -0.082 4.082 14 Cl -0.031 7.031 15 C -0.141 4.141 16 C 0.128 3.872 17 C -0.458 4.458 18 H 0.072 0.928 19 C 0.050 3.950 20 N -0.782 5.782 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.257 1.257 24 H -0.253 1.253 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.169 0.831 28 H 0.214 0.786 29 H 0.126 0.874 30 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 3.121 1.073 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C -0.004 4.004 3 C -0.207 4.207 4 C -0.045 4.045 5 C -0.232 4.232 6 C -0.025 4.025 7 C 0.019 3.981 8 C -0.165 4.165 9 C -0.026 4.026 10 N -0.198 5.198 11 C 0.008 3.992 12 Cl 0.014 6.986 13 C -0.112 4.112 14 Cl -0.002 7.002 15 C -0.160 4.160 16 C 0.123 3.877 17 C -0.485 4.485 18 H 0.090 0.910 19 C -0.172 4.172 20 N -0.404 5.404 21 Si 0.795 3.205 22 H -0.196 1.196 23 H -0.181 1.181 24 H -0.176 1.176 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.187 0.813 28 H 0.230 0.770 29 H 0.144 0.856 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.188 3.037 0.745 12.583 hybrid contribution -1.033 -0.609 -0.156 1.209 sum 11.155 2.429 0.588 11.432 Atomic orbital electron populations 1.81011 1.13281 1.11955 1.14758 1.26016 0.92971 0.90638 0.90813 1.17174 0.82914 1.02910 1.17743 1.20612 0.93837 0.95193 0.94877 1.20333 0.92879 1.00194 1.09831 1.18400 0.89085 0.95525 0.99503 1.19418 0.94009 0.93095 0.91617 1.22701 0.95247 0.99555 0.99006 1.23318 0.91780 0.92264 0.95210 1.67176 1.40654 1.13618 0.98341 1.21432 0.86762 1.00366 0.90646 1.98400 1.76335 1.92740 1.31152 1.21799 0.91199 1.07798 0.90446 1.98383 1.76743 1.93570 1.31538 1.21249 0.93176 0.97614 1.03972 1.18554 0.91958 0.89944 0.87262 1.19843 1.00927 0.94617 1.33162 0.90992 1.26702 0.93655 1.01329 0.95498 1.69673 1.17347 1.24198 1.29214 0.85333 0.79093 0.76838 0.79253 1.19598 1.18075 1.17648 0.85730 0.86214 0.81315 0.76991 0.85595 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.20 18.54 19.00 0.35 -24.85 16 2 C 0.30 13.98 14.27 88.33 1.26 15.24 16 3 C -0.20 -8.81 5.94 -19.55 -0.12 -8.93 16 4 C -0.02 -0.93 9.74 22.47 0.22 -0.71 16 5 C -0.21 -7.57 8.18 22.53 0.18 -7.39 16 6 C -0.02 -0.88 5.18 -20.13 -0.10 -0.98 16 7 C 0.03 0.85 5.47 -19.83 -0.11 0.75 16 8 C -0.15 -3.62 9.61 22.58 0.22 -3.40 16 9 C 0.13 2.77 11.17 84.60 0.94 3.72 16 10 N -0.49 -12.84 10.32 -186.87 -1.93 -14.77 16 11 C 0.17 4.93 7.27 84.69 0.62 5.54 16 12 Cl -0.01 -0.38 28.12 -2.72 -0.08 -0.46 16 13 C -0.08 -2.52 6.30 22.67 0.14 -2.38 16 14 Cl -0.03 -0.96 25.16 -2.72 -0.07 -1.03 16 15 C -0.14 -5.87 8.17 22.94 0.19 -5.68 16 16 C 0.13 5.88 5.74 -19.90 -0.11 5.77 16 17 C -0.46 -21.61 8.58 23.39 0.20 -21.41 16 18 H 0.07 3.52 7.37 -2.91 -0.02 3.50 16 19 C 0.05 2.13 5.14 85.35 0.44 2.57 16 20 N -0.78 -33.77 10.96 21.88 0.24 -33.53 16 21 Si 0.97 33.17 29.60 68.60 2.03 35.20 16 22 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.26 -8.03 7.11 99.48 0.71 -7.33 16 24 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 25 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 26 H 0.12 3.82 7.13 -2.91 -0.02 3.80 16 27 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.21 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.13 5.33 6.14 -2.91 -0.02 5.31 16 30 H 0.30 11.66 8.30 -92.71 -0.77 10.89 16 Total: -1.00 -52.71 307.90 5.74 -46.97 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.22 Total: 9.76 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 3.97 Total: -17.29 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.34 Total: -73.16 kcal Atomic # 14 Polarization: 33.17 SS G_CDS: 2.03 Total: 35.20 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.14 Total: -1.49 kcal Total: -52.71 5.74 -46.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243416516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.118 kcal (2) G-P(sol) polarization free energy of solvation -52.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds