Wall clock time and date at job start Tue Mar 31 2020 12:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31759 * 119.69077 * 2 1 4 4 C 1.31971 * 121.83376 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 119.49601 * 179.97438 * 4 3 2 6 6 C 1.38449 * 121.00460 * 359.73613 * 4 3 2 7 7 C 1.38351 * 119.27589 * 0.53903 * 6 4 3 8 8 C 1.39282 * 119.70119 * 180.02562 * 2 1 3 9 9 C 1.48382 * 120.52088 * 0.02562 * 8 2 1 10 10 C 1.40040 * 120.81978 * 309.97373 * 9 8 2 11 11 C 1.38509 * 119.42149 * 179.97438 * 10 9 8 12 12 N 1.31476 * 121.14518 * 0.02562 * 11 10 9 13 13 C 1.33642 * 121.79511 * 0.02562 * 12 11 10 14 14 C 1.41432 * 119.77780 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99913 * 179.97438 * 14 13 12 16 16 C 1.40034 * 119.99888 * 359.97438 * 14 13 12 17 17 N 1.30739 * 120.00227 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47416 * 59.99790 * 18 16 14 20 20 H 1.48498 * 109.46631 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46734 * 299.99487 * 18 16 14 22 22 C 1.39313 * 120.82294 * 129.69933 * 9 8 2 23 23 H 1.09002 * 109.47137 * 269.97905 * 1 2 3 24 24 H 1.08994 * 109.47683 * 29.97771 * 1 2 3 25 25 H 1.09004 * 109.47249 * 149.97854 * 1 2 3 26 26 H 1.08004 * 120.36124 * 180.29670 * 6 4 3 27 27 H 1.08002 * 120.84136 * 179.75888 * 7 6 4 28 28 H 1.07999 * 120.29181 * 359.96073 * 10 9 8 29 29 H 1.08001 * 119.42515 * 179.97438 * 11 10 9 30 30 H 0.96997 * 120.00064 * 180.02562 * 17 16 14 31 31 H 1.07999 * 120.57946 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1596 1.1446 0.0000 4 6 3.4783 1.1940 -0.0005 5 35 4.3472 2.8735 -0.0012 6 6 4.2354 0.0348 0.0044 7 6 3.5950 -1.1916 -0.0014 8 6 2.1970 -1.2098 -0.0005 9 6 1.4601 -2.4977 -0.0017 10 6 0.4328 -2.7374 0.9194 11 6 -0.2363 -3.9498 0.8921 12 7 0.0765 -4.8796 0.0168 13 6 1.0490 -4.7015 -0.8825 14 6 1.3497 -5.7306 -1.8049 15 1 2.1346 -5.5903 -2.5335 16 6 0.6297 -6.9312 -1.7737 17 7 -0.3200 -7.1012 -0.8915 18 14 1.0274 -8.2907 -2.9916 19 1 2.4398 -8.7145 -2.8166 20 1 0.1300 -9.4490 -2.7508 21 1 0.8288 -7.7892 -4.3753 22 6 1.7692 -3.4962 -0.9227 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 5.3141 0.0873 0.0088 27 1 4.1606 -2.1116 -0.0017 28 1 0.1648 -1.9835 1.6448 29 1 -1.0283 -4.1348 1.6026 30 1 -0.8185 -7.9331 -0.8696 31 1 2.5517 -3.3477 -1.6522 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243555972.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:14 Heat of formation + Delta-G solvation = 60.984267 kcal Electronic energy + Delta-G solvation = -17521.307269 eV Core-core repulsion = 14620.388309 eV Total energy + Delta-G solvation = -2900.918960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27487 -38.13703 -34.22639 -33.24234 -33.00003 -30.97731 -30.16282 -29.23948 -27.27430 -25.71587 -23.56019 -22.17111 -21.37718 -20.77479 -17.65026 -16.51531 -16.17804 -15.62792 -14.98838 -14.71813 -14.37512 -14.04109 -13.82854 -13.06196 -12.83514 -12.63129 -12.52075 -12.31103 -11.90961 -11.57779 -11.25576 -11.18138 -11.03918 -10.75270 -10.54010 -10.48592 -10.09422 -9.80523 -9.52682 -9.41731 -8.84778 -7.94628 -7.77941 -7.70344 -6.51744 -4.65540 0.89229 1.28957 1.37468 2.64518 2.73582 3.02452 3.04165 3.10992 3.76390 3.86278 4.43388 4.62582 4.91509 4.96402 5.06883 5.33870 5.56887 5.77329 5.83688 5.87598 5.94924 6.04213 6.25179 6.27807 6.40229 6.55419 6.66356 6.73512 6.99386 7.16048 7.36359 7.49280 7.80937 7.86264 8.09521 8.51734 8.77458 9.97926 10.19966 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003034 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.382946 B = 9227.953523 C = 9850.437918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.145 3.855 3 N -0.463 5.463 4 C 0.112 3.888 5 Br -0.025 7.025 6 C -0.143 4.143 7 C -0.062 4.062 8 C -0.048 4.048 9 C -0.003 4.003 10 C -0.299 4.299 11 C 0.127 3.873 12 N -0.481 5.481 13 C 0.255 3.745 14 C -0.429 4.429 15 H 0.084 0.916 16 C 0.069 3.931 17 N -0.713 5.713 18 Si 0.908 3.092 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.249 4.249 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.275 0.725 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 12.762 1.583 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.005 3.995 3 N -0.174 5.174 4 C -0.105 4.105 5 Br 0.059 6.941 6 C -0.166 4.166 7 C -0.089 4.089 8 C -0.050 4.050 9 C -0.010 4.010 10 C -0.322 4.322 11 C -0.038 4.038 12 N -0.193 5.193 13 C 0.131 3.869 14 C -0.460 4.460 15 H 0.102 0.898 16 C -0.157 4.157 17 N -0.334 5.334 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.189 1.189 22 C -0.273 4.273 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.159 0.841 27 H 0.164 0.836 28 H 0.116 0.884 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.969 13.204 1.626 14.582 hybrid contribution 1.012 -0.828 -0.452 1.384 sum 6.981 12.376 1.174 14.257 Atomic orbital electron populations 1.20822 0.87859 1.03776 1.03307 1.21417 0.97187 0.86411 0.94491 1.67158 1.07841 1.29882 1.12495 1.22560 0.91794 0.91481 1.04638 1.96700 1.75329 1.24463 1.97604 1.21828 1.01170 0.91449 1.02133 1.21776 0.93794 0.97939 0.95343 1.20050 0.93476 0.94585 0.96933 1.18341 0.95463 0.90452 0.96760 1.21307 1.04318 1.00892 1.05729 1.22479 0.96333 0.89346 0.95679 1.68730 1.16466 1.29320 1.04819 1.18520 0.87671 0.90202 0.90553 1.19622 1.15707 0.97427 1.13234 0.89794 1.26069 0.94168 0.99600 0.95879 1.70108 1.12841 1.23808 1.26597 0.86376 0.79516 0.79775 0.81142 1.18870 1.20119 1.18854 1.21805 1.06102 0.95957 1.03389 0.90206 0.91089 0.89202 0.84062 0.83622 0.88397 0.86096 0.91384 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 8.65 36.00 0.31 -1.20 16 2 C 0.14 2.46 6.79 -82.24 -0.56 1.90 16 3 N -0.46 -7.75 10.22 -7.62 -0.08 -7.83 16 4 C 0.11 1.68 7.16 -17.41 -0.12 1.56 16 5 Br -0.02 -0.31 33.86 -68.01 -2.30 -2.61 16 6 C -0.14 -1.99 9.82 -39.46 -0.39 -2.37 16 7 C -0.06 -0.97 9.71 -38.95 -0.38 -1.34 16 8 C -0.05 -0.85 5.52 -104.75 -0.58 -1.43 16 9 C 0.00 -0.07 4.74 -104.65 -0.50 -0.56 16 10 C -0.30 -6.11 8.05 -38.81 -0.31 -6.42 16 11 C 0.13 2.87 11.17 -17.60 -0.20 2.67 16 12 N -0.48 -12.53 7.85 -11.20 -0.09 -12.62 16 13 C 0.25 6.57 6.55 -85.02 -0.56 6.01 16 14 C -0.43 -10.93 9.14 -37.69 -0.34 -11.27 16 15 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 16 C 0.07 1.68 5.50 -17.34 -0.10 1.58 16 17 N -0.71 -18.23 11.46 55.55 0.64 -17.60 16 18 Si 0.91 17.83 29.56 -169.99 -5.02 12.80 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 22 C -0.25 -5.68 9.39 -38.34 -0.36 -6.04 16 23 H 0.08 1.10 7.55 -51.93 -0.39 0.71 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.09 1.47 6.45 -51.93 -0.33 1.14 16 26 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 27 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.10 1.77 6.95 -52.49 -0.36 1.41 16 29 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.27 6.38 8.29 -40.82 -0.34 6.05 16 31 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 293.92 15.07 4.43 4.43 Total: -1.00 -27.54 293.92 -9.26 -36.80 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -2.75 Total: 3.56 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -4.08 Total: -16.93 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.47 Total: -38.05 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.80 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.30 Total: -2.61 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.54 -9.26 -36.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243555972.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.782 kcal (2) G-P(sol) polarization free energy of solvation -27.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds