Wall clock time and date at job start Tue Mar 31 2020 12:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31759 * 119.69077 * 2 1 4 4 C 1.31971 * 121.83376 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 119.49601 * 179.97438 * 4 3 2 6 6 C 1.38449 * 121.00460 * 359.73613 * 4 3 2 7 7 C 1.38351 * 119.27589 * 0.53903 * 6 4 3 8 8 C 1.39282 * 119.70119 * 180.02562 * 2 1 3 9 9 C 1.48382 * 120.52088 * 0.02562 * 8 2 1 10 10 C 1.40040 * 120.81978 * 309.97373 * 9 8 2 11 11 C 1.38509 * 119.42149 * 179.97438 * 10 9 8 12 12 N 1.31476 * 121.14518 * 0.02562 * 11 10 9 13 13 C 1.33642 * 121.79511 * 0.02562 * 12 11 10 14 14 C 1.41432 * 119.77780 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99913 * 179.97438 * 14 13 12 16 16 C 1.40034 * 119.99888 * 359.97438 * 14 13 12 17 17 N 1.30739 * 120.00227 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47416 * 59.99790 * 18 16 14 20 20 H 1.48498 * 109.46631 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46734 * 299.99487 * 18 16 14 22 22 C 1.39313 * 120.82294 * 129.69933 * 9 8 2 23 23 H 1.09002 * 109.47137 * 269.97905 * 1 2 3 24 24 H 1.08994 * 109.47683 * 29.97771 * 1 2 3 25 25 H 1.09004 * 109.47249 * 149.97854 * 1 2 3 26 26 H 1.08004 * 120.36124 * 180.29670 * 6 4 3 27 27 H 1.08002 * 120.84136 * 179.75888 * 7 6 4 28 28 H 1.07999 * 120.29181 * 359.96073 * 10 9 8 29 29 H 1.08001 * 119.42515 * 179.97438 * 11 10 9 30 30 H 0.96997 * 120.00064 * 180.02562 * 17 16 14 31 31 H 1.07999 * 120.57946 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1596 1.1446 0.0000 4 6 3.4783 1.1940 -0.0005 5 35 4.3472 2.8735 -0.0012 6 6 4.2354 0.0348 0.0044 7 6 3.5950 -1.1916 -0.0014 8 6 2.1970 -1.2098 -0.0005 9 6 1.4601 -2.4977 -0.0017 10 6 0.4328 -2.7374 0.9194 11 6 -0.2363 -3.9498 0.8921 12 7 0.0765 -4.8796 0.0168 13 6 1.0490 -4.7015 -0.8825 14 6 1.3497 -5.7306 -1.8049 15 1 2.1346 -5.5903 -2.5335 16 6 0.6297 -6.9312 -1.7737 17 7 -0.3200 -7.1012 -0.8915 18 14 1.0274 -8.2907 -2.9916 19 1 2.4398 -8.7145 -2.8166 20 1 0.1300 -9.4490 -2.7508 21 1 0.8288 -7.7892 -4.3753 22 6 1.7692 -3.4962 -0.9227 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 5.3141 0.0873 0.0088 27 1 4.1606 -2.1116 -0.0017 28 1 0.1648 -1.9835 1.6448 29 1 -1.0283 -4.1348 1.6026 30 1 -0.8185 -7.9331 -0.8696 31 1 2.5517 -3.3477 -1.6522 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243555972.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:13 Heat of formation + Delta-G solvation = 46.787453 kcal Electronic energy + Delta-G solvation = -17521.922889 eV Core-core repulsion = 14620.388309 eV Total energy + Delta-G solvation = -2901.534580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56049 -39.84297 -35.83492 -34.77238 -34.26452 -32.24764 -31.93562 -30.65274 -28.58170 -27.48345 -24.96273 -23.49793 -23.04973 -22.34075 -19.33547 -17.88978 -17.52919 -17.12112 -16.49156 -16.21886 -15.98898 -15.57185 -15.20240 -14.39012 -14.28262 -14.15692 -14.02568 -13.70112 -13.21435 -13.05875 -12.82265 -12.74266 -12.65091 -12.24515 -11.96367 -11.70008 -11.52786 -11.24358 -10.99217 -10.75283 -10.26206 -9.60135 -9.50956 -9.42597 -8.29801 -6.52906 -0.38645 0.07677 0.24156 0.89549 1.08582 1.41886 1.53580 1.55093 2.23013 2.49510 2.84767 3.23985 3.59582 3.71865 3.84060 3.95492 4.10767 4.24131 4.42715 4.60916 4.63880 4.75555 4.78346 4.88274 4.91709 5.10064 5.12371 5.21953 5.38629 5.45549 5.62801 5.79553 6.08496 6.26453 6.59948 6.71489 6.93598 8.18354 8.44487 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003034 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.382946 B = 9227.953523 C = 9850.437918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.140 3.860 3 N -0.477 5.477 4 C 0.104 3.896 5 Br 0.003 6.997 6 C -0.134 4.134 7 C -0.060 4.060 8 C -0.076 4.076 9 C 0.009 3.991 10 C -0.284 4.284 11 C 0.109 3.891 12 N -0.519 5.519 13 C 0.227 3.773 14 C -0.469 4.469 15 H 0.089 0.911 16 C 0.026 3.974 17 N -0.755 5.755 18 Si 0.984 3.016 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.266 4.266 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.176 0.824 27 H 0.156 0.844 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.279 0.721 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 14.170 1.608 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.000 4.000 3 N -0.188 5.188 4 C -0.112 4.112 5 Br 0.087 6.913 6 C -0.155 4.155 7 C -0.086 4.086 8 C -0.078 4.078 9 C 0.002 3.998 10 C -0.307 4.307 11 C -0.055 4.055 12 N -0.232 5.232 13 C 0.102 3.898 14 C -0.500 4.500 15 H 0.107 0.893 16 C -0.196 4.196 17 N -0.377 5.377 18 Si 0.804 3.196 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.289 4.289 23 H 0.112 0.888 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.193 0.807 27 H 0.174 0.826 28 H 0.143 0.857 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.282 14.641 1.668 16.437 hybrid contribution 0.683 -0.980 -0.358 1.247 sum 7.965 13.661 1.309 15.867 Atomic orbital electron populations 1.20804 0.87077 1.03490 1.04093 1.21562 0.97890 0.86270 0.94264 1.67242 1.08777 1.29559 1.13236 1.23079 0.91633 0.93253 1.03259 1.96732 1.74444 1.22645 1.97439 1.22141 1.02757 0.90211 1.00437 1.21962 0.93016 0.99248 0.94383 1.19936 0.94466 0.93445 0.99962 1.18533 0.94902 0.91085 0.95298 1.21583 1.03221 1.00421 1.05427 1.22909 0.97174 0.89809 0.95640 1.68666 1.17461 1.31103 1.06003 1.18910 0.88340 0.91526 0.91015 1.19976 1.17026 0.98707 1.14307 0.89308 1.26945 0.93552 1.01605 0.97482 1.70207 1.14143 1.24756 1.28555 0.85236 0.79426 0.76485 0.78429 1.18242 1.19350 1.18391 1.21883 1.06523 0.95992 1.04453 0.88821 0.89798 0.91006 0.80675 0.82643 0.85699 0.84180 0.90995 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.80 8.65 71.23 0.62 -2.18 16 2 C 0.14 4.51 6.79 42.82 0.29 4.80 16 3 N -0.48 -14.92 10.22 -178.01 -1.82 -16.74 16 4 C 0.10 2.85 7.16 84.72 0.61 3.46 16 5 Br 0.00 0.08 33.86 -20.37 -0.69 -0.61 16 6 C -0.13 -3.29 9.82 22.35 0.22 -3.07 16 7 C -0.06 -1.73 9.71 22.68 0.22 -1.51 16 8 C -0.08 -2.59 5.52 -19.95 -0.11 -2.70 16 9 C 0.01 0.36 4.74 -19.88 -0.09 0.27 16 10 C -0.28 -11.42 8.05 22.77 0.18 -11.23 16 11 C 0.11 4.95 11.17 84.81 0.95 5.90 16 12 N -0.52 -27.94 7.85 -189.36 -1.49 -29.43 16 13 C 0.23 12.11 6.55 40.20 0.26 12.37 16 14 C -0.47 -24.74 9.14 23.49 0.21 -24.52 16 15 H 0.09 4.36 7.85 -2.91 -0.02 4.33 16 16 C 0.03 1.30 5.50 85.29 0.47 1.77 16 17 N -0.75 -39.92 11.46 21.84 0.25 -39.67 16 18 Si 0.98 37.14 29.56 68.60 2.03 39.17 16 19 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 20 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 C -0.27 -12.35 9.39 23.07 0.22 -12.13 16 23 H 0.09 2.39 7.55 -2.39 -0.02 2.37 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 2.32 6.45 -2.38 -0.02 2.30 16 26 H 0.18 3.07 8.06 -2.91 -0.02 3.04 16 27 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 28 H 0.13 4.29 6.95 -2.91 -0.02 4.27 16 29 H 0.14 5.61 8.06 -2.91 -0.02 5.59 16 30 H 0.28 13.39 8.29 -92.71 -0.77 12.62 16 31 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -60.59 293.92 3.49 -57.10 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.16 Total: 18.97 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 4.04 Total: -28.79 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -3.06 Total: -85.84 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.61 kcal Total: -60.59 3.49 -57.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243555972.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.888 kcal (2) G-P(sol) polarization free energy of solvation -60.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds