Wall clock time and date at job start Tue Mar 31 2020 12:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86809 * 120.00074 * 2 1 4 4 H 1.48503 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46950 * 300.00154 * 3 2 1 6 6 H 1.48496 * 109.46972 * 60.00195 * 3 2 1 7 7 C 1.40149 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.41095 * 119.99579 * 359.97438 * 7 2 1 10 10 N 1.33637 * 119.12928 * 180.02562 * 9 7 2 11 11 C 1.31595 * 120.82770 * 180.02562 * 10 9 7 12 12 C 1.40426 * 119.09448 * 0.02562 * 11 10 9 13 13 C 1.47936 * 120.78965 * 179.97438 * 12 11 10 14 14 C 1.39673 * 120.14756 * 359.72895 * 13 12 11 15 15 C 1.37895 * 119.84405 * 179.78732 * 14 13 12 16 16 C 1.38428 * 120.15231 * 0.48541 * 15 14 13 17 17 C 1.38385 * 120.29682 * 359.74344 * 16 15 14 18 18 C 1.50705 * 119.92284 * 179.97438 * 17 16 15 19 19 Br 1.96602 * 109.47461 * 270.02345 * 18 17 16 20 20 C 1.37937 * 120.15071 * 0.02562 * 17 16 15 21 21 C 1.40432 * 118.41796 * 0.25358 * 12 11 10 22 22 N 1.31593 * 119.09091 * 359.48003 * 21 12 11 23 23 H 0.96998 * 120.00113 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.44977 * 179.97438 * 11 10 9 25 25 H 1.07997 * 120.07498 * 359.97438 * 14 13 12 26 26 H 1.08007 * 119.92134 * 180.20858 * 15 14 13 27 27 H 1.08002 * 119.84849 * 179.76584 * 16 15 14 28 28 H 1.09003 * 109.46852 * 30.02697 * 18 17 16 29 29 H 1.09000 * 109.47089 * 150.02239 * 18 17 16 30 30 H 1.08004 * 120.07296 * 180.02562 * 20 17 16 31 31 H 1.07995 * 120.45081 * 179.72643 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8818 2.3965 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0074 -1.2137 -0.0005 8 1 3.0873 -1.2136 -0.0010 9 6 1.3019 -2.4356 -0.0005 10 7 1.9875 -3.5827 -0.0005 11 6 1.3636 -4.7413 -0.0010 12 6 -0.0405 -4.7607 -0.0021 13 6 -0.7801 -6.0419 -0.0033 14 6 -0.0848 -7.2532 -0.0090 15 6 -0.7806 -8.4438 -0.0057 16 6 -2.1648 -8.4402 -0.0067 17 6 -2.8599 -7.2436 -0.0059 18 6 -4.3669 -7.2496 -0.0076 19 35 -5.0202 -7.2503 -1.8619 20 6 -2.1765 -6.0454 -0.0044 21 6 -0.7258 -3.5350 -0.0081 22 7 -0.0344 -2.4153 -0.0020 23 1 -0.4850 0.8400 0.0004 24 1 1.9239 -5.6647 -0.0015 25 1 0.9951 -7.2574 -0.0131 26 1 -0.2442 -9.3813 -0.0067 27 1 -2.7048 -9.3756 -0.0079 28 1 -4.7273 -8.1415 0.5050 29 1 -4.7344 -6.3615 0.5067 30 1 -2.7202 -5.1123 -0.0033 31 1 -1.8055 -3.5116 -0.0136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243927426.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:47 Heat of formation + Delta-G solvation = 44.036647 kcal Electronic energy + Delta-G solvation = -17280.570627 eV Core-core repulsion = 14378.916763 eV Total energy + Delta-G solvation = -2901.653864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06884 -39.78221 -35.92862 -34.48647 -33.94541 -33.07552 -30.99656 -30.54572 -27.90006 -26.98641 -24.77957 -24.41849 -22.43750 -21.52955 -19.85338 -18.05017 -17.70628 -16.92977 -16.38820 -16.07169 -15.79943 -15.10322 -14.72044 -14.57805 -14.41170 -14.35184 -13.91854 -13.65739 -13.13963 -13.10347 -12.84532 -12.78460 -12.38825 -11.96447 -11.92413 -11.43869 -11.22587 -11.05948 -10.81252 -10.74054 -10.53127 -9.61109 -9.33520 -8.98551 -8.52259 -6.75331 -0.04567 0.24156 0.97357 1.03991 1.26412 1.38926 1.54578 1.56813 2.16603 2.65340 3.10246 3.59325 3.84676 3.87893 3.88956 3.92482 4.11852 4.29054 4.34729 4.37004 4.51984 4.61658 4.69495 4.87622 5.01648 5.17029 5.22947 5.29699 5.56132 5.64812 5.77365 5.90351 6.06812 6.18089 6.43254 6.52057 7.10093 8.12815 8.26955 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.003233 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.761608 B = 8657.503032 C = 9733.271524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.021 3.979 3 Si 1.003 2.997 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.094 0.906 9 C 0.351 3.649 10 N -0.619 5.619 11 C 0.172 3.828 12 C -0.314 4.314 13 C 0.004 3.996 14 C -0.141 4.141 15 C -0.106 4.106 16 C -0.127 4.127 17 C -0.090 4.090 18 C -0.026 4.026 19 Br -0.176 7.176 20 C -0.131 4.131 21 C 0.161 3.839 22 N -0.539 5.539 23 H 0.288 0.712 24 H 0.166 0.834 25 H 0.126 0.874 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 -13.822 -0.040 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.204 4.204 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.112 0.888 9 C 0.117 3.883 10 N -0.338 5.338 11 C -0.001 4.001 12 C -0.324 4.324 13 C 0.002 3.998 14 C -0.160 4.160 15 C -0.123 4.123 16 C -0.146 4.146 17 C -0.090 4.090 18 C -0.140 4.140 19 Br -0.096 7.096 20 C -0.151 4.151 21 C -0.014 4.014 22 N -0.256 5.256 23 H 0.099 0.901 24 H 0.183 0.817 25 H 0.144 0.856 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.859 -12.666 -0.663 16.064 hybrid contribution -0.034 0.008 0.319 0.321 sum -9.894 -12.657 -0.344 16.069 Atomic orbital electron populations 1.70178 1.09108 1.30178 1.26208 1.27175 0.95935 1.04872 0.92414 0.84858 0.79162 0.74550 0.79339 1.17718 1.18462 1.18363 1.19847 0.95272 0.88976 1.41058 0.88801 1.20381 0.86632 0.91881 0.89446 1.68666 1.41429 0.99160 1.24534 1.23284 0.91450 0.96113 0.89229 1.20044 0.95228 0.94292 1.22793 1.18618 0.92883 0.91521 0.96776 1.21397 1.00393 0.91828 1.02380 1.21281 0.94389 0.97991 0.98665 1.21231 0.94384 0.97510 1.01447 1.19528 0.94089 0.93463 1.01950 1.23678 0.93024 1.08910 0.88378 1.97424 1.88771 1.99634 1.23726 1.21060 0.93239 0.97929 1.02859 1.23486 1.00037 0.88223 0.89657 1.69309 1.08198 1.28420 1.19661 0.90069 0.81699 0.85569 0.83251 0.83546 0.84783 0.86687 0.86685 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.45 11.40 21.86 0.25 -38.20 16 2 C 0.02 1.04 5.50 85.33 0.47 1.50 16 3 Si 1.00 36.81 29.56 68.60 2.03 38.84 16 4 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.42 -23.15 9.35 23.44 0.22 -22.93 16 8 H 0.09 5.01 7.85 -2.91 -0.02 4.98 16 9 C 0.35 20.23 7.35 134.91 0.99 21.22 16 10 N -0.62 -33.23 10.34 -193.17 -2.00 -35.23 16 11 C 0.17 7.84 10.70 85.26 0.91 8.75 16 12 C -0.31 -13.72 5.94 -19.64 -0.12 -13.84 16 13 C 0.00 0.13 5.88 -20.02 -0.12 0.01 16 14 C -0.14 -4.11 9.45 22.54 0.21 -3.90 16 15 C -0.11 -2.40 10.03 22.23 0.22 -2.18 16 16 C -0.13 -2.70 9.70 22.35 0.22 -2.48 16 17 C -0.09 -2.14 5.19 -19.90 -0.10 -2.25 16 18 C -0.03 -0.47 6.73 71.24 0.48 0.01 16 19 Br -0.18 -3.89 33.92 -20.37 -0.69 -4.58 16 20 C -0.13 -4.04 9.10 22.54 0.21 -3.84 16 21 C 0.16 7.77 10.70 85.26 0.91 8.68 16 22 N -0.54 -30.33 7.83 -193.17 -1.51 -31.85 16 23 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 24 H 0.17 6.11 6.33 -2.91 -0.02 6.09 16 25 H 0.13 3.41 6.29 -2.91 -0.02 3.39 16 26 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 27 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 28 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 29 H 0.11 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.12 3.56 6.29 -2.91 -0.02 3.55 16 31 H 0.15 6.32 6.33 -2.91 -0.02 6.30 16 Total: -1.00 -66.07 293.66 3.75 -62.32 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.17 Total: 19.94 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.50 Total: -11.24 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.26 Total: -105.28 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 35 Polarization: -3.89 SS G_CDS: -0.69 Total: -4.58 kcal Total: -66.07 3.75 -62.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243927426.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.354 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds