Wall clock time and date at job start Tue Mar 31 2020 12:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39074 * 120.56741 * 245.08392 * 3 2 1 5 5 C 1.39398 * 119.80638 * 180.25920 * 4 3 2 6 6 C 1.47969 * 119.50070 * 179.73324 * 5 4 3 7 7 C 1.40115 * 120.57493 * 244.97465 * 6 5 4 8 8 Cl 1.73598 * 120.86107 * 0.02562 * 7 6 5 9 9 C 1.38532 * 118.27911 * 179.97438 * 7 6 5 10 10 C 1.38281 * 119.32167 * 359.97438 * 9 7 6 11 11 N 1.31962 * 121.11986 * 0.02562 * 10 9 7 12 12 C 1.31817 * 121.88810 * 359.72606 * 11 10 9 13 13 Cl 1.73600 * 119.72688 * 180.26807 * 12 11 10 14 14 C 1.40001 * 120.99635 * 359.70919 * 5 4 3 15 15 C 1.35995 * 121.19203 * 0.02562 * 14 5 4 16 16 C 1.41049 * 120.10884 * 359.97438 * 15 14 5 17 17 C 1.40435 * 120.48623 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00169 * 154.64438 * 17 16 15 19 19 C 1.40302 * 120.00084 * 334.63955 * 17 16 15 20 20 N 1.30637 * 119.99787 * 334.61567 * 19 17 16 21 21 Si 1.86799 * 120.00028 * 154.61375 * 19 17 16 22 22 H 1.48496 * 109.46951 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47147 * 300.00269 * 21 19 17 24 24 H 1.48499 * 109.47019 * 60.00267 * 21 19 17 25 25 H 1.08005 * 120.09401 * 359.97438 * 4 3 2 26 26 H 1.07999 * 120.33878 * 180.02562 * 9 7 6 27 27 H 1.08001 * 119.43613 * 179.97438 * 10 9 7 28 28 H 1.07999 * 119.40375 * 180.02562 * 14 5 4 29 29 H 1.07998 * 119.94671 * 180.02562 * 15 14 5 30 30 H 0.97000 * 120.00110 * 354.18377 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2750 0.5054 1.0860 5 6 4.6689 0.5032 1.0669 6 6 5.4143 1.0474 2.2235 7 6 6.2094 2.1926 2.0841 8 17 6.3418 3.0040 0.5551 9 6 6.8862 2.6614 3.1982 10 6 6.7567 1.9913 4.4008 11 7 6.0007 0.9146 4.5037 12 6 5.3329 0.4317 3.4748 13 17 4.3493 -0.9846 3.6750 14 6 5.3741 -0.0065 -0.0298 15 6 4.7239 -0.5149 -1.1107 16 6 3.3139 -0.5366 -1.1426 17 6 2.6344 -1.0592 -2.2550 18 1 1.6353 -1.4529 -2.1414 19 6 3.2535 -1.0695 -3.5140 20 7 4.1896 -0.2006 -3.7887 21 14 2.7395 -2.3258 -4.7973 22 1 3.5395 -2.1274 -6.0324 23 1 2.9731 -3.6947 -4.2713 24 1 1.2975 -2.1543 -5.1080 25 1 2.7456 0.9022 1.9397 26 1 7.5080 3.5417 3.1284 27 1 7.2838 2.3549 5.2705 28 1 6.4539 0.0041 -0.0172 29 1 5.2881 -0.9033 -1.9457 30 1 4.3981 0.5041 -3.1557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244940234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:31 Heat of formation + Delta-G solvation = 42.395199 kcal Electronic energy + Delta-G solvation = -20427.896803 eV Core-core repulsion = 17045.475517 eV Total energy + Delta-G solvation = -3382.421286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 318.002 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.33563 -39.62515 -37.80486 -37.50214 -37.11583 -36.31247 -33.67827 -32.65569 -31.83702 -30.53702 -27.43495 -24.74353 -24.56268 -24.00679 -22.46359 -20.21580 -19.13174 -18.36297 -17.95024 -16.79989 -16.55940 -16.30330 -15.68589 -15.47686 -15.35292 -14.96024 -14.73708 -14.42024 -14.26244 -13.87130 -13.71035 -13.48898 -13.43585 -13.02584 -12.76505 -12.59958 -12.54108 -12.22702 -12.01731 -11.91145 -11.82414 -11.58458 -11.08576 -10.79277 -10.47141 -10.05635 -9.73574 -9.51949 -9.28464 -6.68912 -0.23915 -0.13735 0.33162 0.68860 0.80875 1.11887 1.50266 1.59377 1.79162 1.94194 2.21241 2.24005 2.48899 2.58265 3.37305 3.38683 3.53968 3.65783 3.85991 4.10070 4.12723 4.30174 4.47029 4.53392 4.84691 4.87410 4.91212 5.21148 5.30853 5.47498 5.56935 5.63617 5.79425 5.96173 6.10958 6.48131 6.58841 6.63515 6.86413 7.79109 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.004695 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.952660 B = 5962.873780 C = 6831.546715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.302 3.698 3 C -0.206 4.206 4 C 0.025 3.975 5 C -0.201 4.201 6 C -0.043 4.043 7 C 0.004 3.996 8 Cl -0.038 7.038 9 C -0.146 4.146 10 C 0.123 3.877 11 N -0.493 5.493 12 C 0.168 3.832 13 Cl -0.028 7.028 14 C -0.012 4.012 15 C -0.223 4.223 16 C 0.121 3.879 17 C -0.497 4.497 18 H 0.070 0.930 19 C 0.013 3.987 20 N -0.769 5.769 21 Si 1.108 2.892 22 H -0.261 1.261 23 H -0.258 1.258 24 H -0.267 1.267 25 H 0.109 0.891 26 H 0.187 0.813 27 H 0.215 0.785 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 4.692 9.039 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.007 4.007 3 C -0.212 4.212 4 C 0.004 3.996 5 C -0.203 4.203 6 C -0.047 4.047 7 C -0.031 4.031 8 Cl -0.008 7.008 9 C -0.166 4.166 10 C -0.034 4.034 11 N -0.204 5.204 12 C 0.005 3.995 13 Cl 0.001 6.999 14 C -0.031 4.031 15 C -0.242 4.242 16 C 0.115 3.885 17 C -0.523 4.523 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.389 5.389 21 Si 0.925 3.075 22 H -0.185 1.185 23 H -0.182 1.182 24 H -0.192 1.192 25 H 0.127 0.873 26 H 0.204 0.796 27 H 0.231 0.769 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.399 3.730 8.199 13.019 hybrid contribution -0.260 0.868 0.598 1.086 sum 9.140 4.598 8.797 13.493 Atomic orbital electron populations 1.81007 1.13125 1.14804 1.11496 1.25945 0.92929 0.90938 0.90866 1.16762 0.82898 1.19709 1.01787 1.20546 0.92789 0.92218 0.94060 1.17384 0.91306 1.15804 0.95773 1.19303 0.97877 0.94444 0.93119 1.21680 0.98407 0.93379 0.89645 1.98416 1.96574 1.77192 1.28660 1.22528 1.00140 1.02981 0.90933 1.23409 0.93341 0.88351 0.98312 1.67016 1.07902 1.14045 1.31445 1.21877 0.96185 0.91862 0.89574 1.98411 1.67129 1.36820 1.97571 1.20400 0.98439 0.93058 0.91247 1.20659 0.92917 1.10229 1.00373 1.18698 0.92219 0.86863 0.90671 1.20953 1.03286 1.32895 0.95206 0.91136 1.28457 0.91509 0.99803 1.01172 1.70488 1.21453 1.08678 1.38275 0.83088 0.77388 0.73722 0.73336 1.18501 1.18206 1.19164 0.87277 0.79610 0.76858 0.86819 0.87371 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.59 18.54 19.00 0.35 -25.24 16 2 C 0.30 14.32 14.30 88.33 1.26 15.58 16 3 C -0.21 -9.28 5.93 -19.63 -0.12 -9.39 16 4 C 0.02 0.98 8.49 22.75 0.19 1.17 16 5 C -0.20 -7.26 4.12 -19.99 -0.08 -7.34 16 6 C -0.04 -1.34 5.29 -19.89 -0.11 -1.44 16 7 C 0.00 0.10 6.38 22.80 0.15 0.24 16 8 Cl -0.04 -1.00 27.53 -2.72 -0.07 -1.07 16 9 C -0.15 -2.56 9.92 22.35 0.22 -2.34 16 10 C 0.12 2.15 11.17 84.68 0.95 3.10 16 11 N -0.49 -12.77 10.33 -185.64 -1.92 -14.69 16 12 C 0.17 5.08 7.29 85.05 0.62 5.70 16 13 Cl -0.03 -0.88 27.45 -2.72 -0.07 -0.96 16 14 C -0.01 -0.46 8.77 22.18 0.19 -0.27 16 15 C -0.22 -9.57 7.88 22.44 0.18 -9.39 16 16 C 0.12 5.69 5.46 -19.86 -0.11 5.58 16 17 C -0.50 -24.15 8.48 23.31 0.20 -23.95 16 18 H 0.07 3.56 7.45 -2.91 -0.02 3.54 16 19 C 0.01 0.61 4.95 85.37 0.42 1.03 16 20 N -0.77 -35.68 12.31 21.89 0.27 -35.41 16 21 Si 1.11 38.70 30.01 68.60 2.06 40.76 16 22 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 23 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 24 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 25 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 26 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 27 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 28 H 0.11 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.11 4.78 6.49 -2.91 -0.02 4.76 16 30 H 0.30 14.14 6.68 -92.71 -0.62 13.52 16 Total: -1.00 -55.36 308.76 5.95 -49.41 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.37 Total: 8.93 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 3.97 Total: -21.73 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.30 Total: -75.34 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.06 Total: 40.76 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.15 Total: -2.03 kcal Total: -55.36 5.95 -49.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244940234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.803 kcal (2) G-P(sol) polarization free energy of solvation -55.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds