Wall clock time and date at job start Tue Mar 31 2020 12:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30520 * 1 3 3 Si 1.86791 * 120.00606 * 2 1 4 4 H 1.48493 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47290 * 300.00047 * 3 2 1 6 6 H 1.48503 * 109.47127 * 59.99884 * 3 2 1 7 7 C 1.40439 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00097 * 179.97438 * 7 2 1 9 9 C 1.40369 * 119.99831 * 0.02562 * 7 2 1 10 10 N 1.33194 * 126.67942 * 180.30858 * 9 7 2 11 11 C 1.34305 * 105.48048 * 180.08890 * 10 9 7 12 12 C 1.48433 * 126.20424 * 179.88174 * 11 10 9 13 13 C 1.39349 * 120.10518 * 359.96699 * 12 11 10 14 14 C 1.37967 * 119.89495 * 180.29828 * 13 12 11 15 15 C 1.38471 * 120.10337 * 359.72556 * 14 13 12 16 16 Cl 1.73602 * 119.89373 * 180.02562 * 15 14 13 17 17 C 1.38420 * 120.21102 * 359.97438 * 15 14 13 18 18 C 1.38013 * 120.10606 * 0.02562 * 17 15 14 19 19 C 1.50703 * 120.05406 * 180.02562 * 18 17 15 20 20 F 1.39905 * 109.47157 * 0.02562 * 19 18 17 21 21 F 1.39900 * 109.47159 * 240.00381 * 19 18 17 22 22 F 1.39897 * 109.47274 * 120.00072 * 19 18 17 23 23 N 1.31278 * 107.58821 * 359.62294 * 11 10 9 24 24 O 1.21260 * 110.53036 * 0.23786 * 23 11 10 25 25 H 0.97001 * 119.99360 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.05394 * 0.04117 * 13 12 11 27 27 H 1.07995 * 119.94539 * 179.74526 * 14 13 12 28 28 H 1.07997 * 119.95253 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 3.6992 1.3462 0.0006 5 1 1.8807 2.3963 -1.2125 6 1 1.8806 2.3963 1.2125 7 6 2.0073 -1.2163 0.0005 8 1 3.0872 -1.2164 0.0001 9 6 1.3053 -2.4319 0.0005 10 7 1.8325 -3.6550 0.0068 11 6 0.7857 -4.4965 0.0019 12 6 0.8528 -5.9793 0.0033 13 6 2.0887 -6.6230 0.0095 14 6 2.1461 -8.0015 0.0045 15 6 0.9780 -8.7452 -0.0009 16 17 1.0566 -10.4795 -0.0064 17 6 -0.2519 -8.1103 -0.0007 18 6 -0.3194 -6.7318 0.0042 19 6 -1.6592 -6.0418 0.0050 20 9 -2.6778 -7.0008 0.0007 21 9 -1.7703 -5.2378 -1.1346 22 9 -1.7733 -5.2461 1.1500 23 7 -0.3075 -3.7697 0.0014 24 8 -0.0330 -2.5886 0.0007 25 1 -0.4849 0.8401 0.0004 26 1 3.0003 -6.0438 0.0139 27 1 3.1035 -8.5012 0.0051 28 1 -1.1603 -8.6944 -0.0045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247384582.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:50 Heat of formation + Delta-G solvation = -82.299963 kcal Electronic energy + Delta-G solvation = -24165.625379 eV Core-core repulsion = 19795.231000 eV Total energy + Delta-G solvation = -4370.394379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.012 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.13336 -48.68889 -48.52634 -45.11890 -40.65434 -37.70205 -36.11792 -35.75624 -33.54960 -32.85063 -31.32949 -28.59814 -27.35718 -25.19467 -23.90380 -23.10259 -22.43028 -20.24865 -19.51371 -19.42810 -19.15536 -18.00310 -17.57111 -17.23071 -16.84430 -16.48469 -16.16105 -15.55564 -15.51614 -15.04638 -15.00618 -14.86975 -14.77151 -14.71285 -14.64029 -13.92649 -13.62110 -13.52679 -13.13414 -13.06515 -13.00150 -12.77918 -12.23209 -12.02083 -12.00968 -11.94054 -11.59133 -11.12274 -10.62115 -10.52017 -9.66588 -8.97752 -7.12603 -0.62475 -0.19165 0.84585 0.97555 1.41556 1.50298 1.61172 1.63506 1.86074 2.14635 2.40881 2.61731 2.87665 3.00456 3.04920 3.28013 3.39169 3.49028 3.74721 3.95203 4.06836 4.28443 4.58301 4.60755 4.82390 4.92554 5.08162 5.27206 5.36522 5.79228 5.99357 6.21448 6.40664 8.02017 8.15184 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.023006 B = 0.004008 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.781592 B = 6984.060282 C = 8026.334121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.027 3.973 3 Si 1.023 2.977 4 H -0.244 1.244 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.427 4.427 8 H 0.127 0.873 9 C 0.272 3.728 10 N -0.616 5.616 11 C 0.172 3.828 12 C 0.035 3.965 13 C -0.074 4.074 14 C -0.059 4.059 15 C -0.031 4.031 16 Cl -0.034 7.034 17 C -0.060 4.060 18 C -0.167 4.167 19 C 0.514 3.486 20 F -0.173 7.173 21 F -0.178 7.178 22 F -0.179 7.179 23 N -0.459 5.459 24 O 0.026 5.974 25 H 0.306 0.694 26 H 0.154 0.846 27 H 0.186 0.814 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -12.523 -0.013 12.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.195 4.195 3 Si 0.839 3.161 4 H -0.167 1.167 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.145 0.855 9 C 0.085 3.915 10 N -0.361 5.361 11 C -0.099 4.099 12 C 0.033 3.967 13 C -0.094 4.094 14 C -0.077 4.077 15 C -0.058 4.058 16 Cl -0.005 7.005 17 C -0.079 4.079 18 C -0.170 4.170 19 C 0.459 3.541 20 F -0.155 7.155 21 F -0.160 7.160 22 F -0.160 7.160 23 N -0.190 5.190 24 O -0.021 6.021 25 H 0.118 0.882 26 H 0.172 0.828 27 H 0.203 0.797 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.096 -13.091 -0.007 13.257 hybrid contribution -0.441 1.125 -0.004 1.209 sum 1.654 -11.965 -0.011 12.079 Atomic orbital electron populations 1.69705 1.09812 1.33012 1.29581 1.27415 0.95890 1.05935 0.90261 0.84552 0.79196 0.72887 0.79479 1.16715 1.18261 1.18276 1.19206 0.95889 0.85794 1.45486 0.85521 1.24781 0.79827 0.95092 0.91836 1.72282 1.27734 0.98291 1.37834 1.23844 0.86857 0.96289 1.02914 1.17536 0.94466 0.85972 0.98726 1.21313 0.96310 0.94618 0.97147 1.21533 0.99378 0.91802 0.95030 1.20885 0.93951 0.86464 1.04528 1.98393 1.98640 1.06769 1.96691 1.20890 0.99580 0.90761 0.96619 1.19915 0.90910 0.95168 1.11026 1.18068 0.85208 0.76627 0.74168 1.93131 1.62731 1.63307 1.96316 1.93208 1.96427 1.75008 1.51326 1.93204 1.96413 1.75475 1.50920 1.74719 1.24216 0.90961 1.29068 1.85473 1.26343 1.18479 1.71836 0.88226 0.82802 0.79662 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.20 12.05 21.91 0.26 -39.93 15 2 C 0.03 1.27 5.50 85.42 0.47 1.74 15 3 Si 1.02 33.79 29.56 68.60 2.03 35.82 15 4 H -0.24 -7.63 7.11 99.48 0.71 -6.92 15 5 H -0.26 -8.12 7.11 99.48 0.71 -7.42 15 6 H -0.26 -8.13 7.11 99.48 0.71 -7.43 15 7 C -0.43 -22.07 9.48 23.33 0.22 -21.85 15 8 H 0.13 6.04 7.85 -2.91 -0.02 6.02 15 9 C 0.27 15.59 7.80 85.06 0.66 16.26 15 10 N -0.62 -33.41 11.29 -305.07 -3.45 -36.86 15 11 C 0.17 8.82 7.39 137.44 1.02 9.84 15 12 C 0.04 1.40 5.85 -20.04 -0.12 1.28 15 13 C -0.07 -2.27 9.69 22.47 0.22 -2.05 15 14 C -0.06 -1.29 9.81 22.26 0.22 -1.07 15 15 C -0.03 -0.68 6.32 22.37 0.14 -0.54 15 16 Cl -0.03 -0.59 28.95 -2.72 -0.08 -0.67 15 17 C -0.06 -1.57 9.20 22.26 0.20 -1.37 15 18 C -0.17 -5.90 5.39 -19.66 -0.11 -6.01 15 19 C 0.51 20.34 2.78 71.24 0.20 20.54 15 20 F -0.17 -5.69 15.97 44.97 0.72 -4.97 15 21 F -0.18 -8.09 14.94 44.97 0.67 -7.42 15 22 F -0.18 -8.10 15.01 44.97 0.67 -7.42 15 23 N -0.46 -25.71 6.93 -56.05 -0.39 -26.09 15 24 O 0.03 1.54 9.72 64.32 0.62 2.16 15 25 H 0.31 13.51 8.29 -92.71 -0.77 12.75 15 26 H 0.15 4.76 7.86 -2.91 -0.02 4.73 15 27 H 0.19 2.54 8.06 -2.91 -0.02 2.52 15 28 H 0.17 3.65 7.15 -2.91 -0.02 3.63 15 Total: -1.00 -66.19 284.19 5.46 -60.73 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.26 Total: 7.88 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 3.13 Total: 16.78 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.57 Total: -102.89 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.62 Total: 2.16 kcal Atomic # 9 Polarization: -21.88 SS G_CDS: 2.07 Total: -19.82 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -66.19 5.46 -60.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247384582.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.567 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds