Wall clock time and date at job start Tue Mar 31 2020 12:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48502 * 109.47435 * 270.00184 * 3 2 1 5 5 H 1.48501 * 109.46836 * 30.00173 * 3 2 1 6 6 H 1.48503 * 109.47255 * 150.00047 * 3 2 1 7 7 C 1.40438 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.40375 * 119.99876 * 359.97438 * 7 2 1 10 10 N 1.33179 * 126.68051 * 179.97438 * 9 7 2 11 11 C 1.34297 * 105.48116 * 180.02562 * 10 9 7 12 12 C 1.48442 * 126.20381 * 180.02562 * 11 10 9 13 13 C 1.39343 * 120.10421 * 359.97062 * 12 11 10 14 14 C 1.37971 * 119.89438 * 179.97438 * 13 12 11 15 15 C 1.38469 * 120.10378 * 0.02615 * 14 13 12 16 16 Cl 1.73602 * 119.89577 * 179.97438 * 15 14 13 17 17 C 1.38428 * 120.21225 * 359.97438 * 15 14 13 18 18 C 1.50702 * 119.94779 * 179.97438 * 17 15 14 19 19 F 1.39903 * 109.46804 * 180.02562 * 18 17 15 20 20 F 1.39902 * 109.47149 * 300.00041 * 18 17 15 21 21 F 1.39894 * 109.47426 * 60.00328 * 18 17 15 22 22 C 1.38015 * 120.10535 * 359.70935 * 17 15 14 23 23 N 1.31267 * 107.59386 * 359.97438 * 11 10 9 24 24 O 1.21273 * 110.52944 * 0.02562 * 23 11 10 25 25 H 0.97011 * 119.99562 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.05689 * 359.95517 * 13 12 11 27 27 H 1.07990 * 119.94804 * 179.97438 * 14 13 12 28 28 H 1.07996 * 120.05437 * 180.27825 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0464 -1.4001 5 1 1.4368 2.6526 0.7001 6 1 3.5369 1.4400 0.7000 7 6 2.0073 -1.2163 -0.0005 8 1 3.0873 -1.2163 -0.0001 9 6 1.3053 -2.4319 -0.0005 10 7 1.8325 -3.6549 -0.0015 11 6 0.7858 -4.4964 -0.0016 12 6 0.8530 -5.9793 -0.0021 13 6 2.0888 -6.6229 -0.0030 14 6 2.1462 -8.0015 -0.0028 15 6 0.9782 -8.7452 -0.0023 16 17 1.0567 -10.4794 -0.0028 17 6 -0.2519 -8.1103 -0.0014 18 6 -1.5193 -8.9256 -0.0015 19 9 -2.6251 -8.0685 -0.0011 20 9 -1.5552 -9.7318 -1.1443 21 9 -1.5544 -9.7332 1.1403 22 6 -0.3194 -6.7318 0.0050 23 7 -0.3074 -3.7698 -0.0002 24 8 -0.0330 -2.5885 0.0002 25 1 -0.4850 0.8402 -0.0004 26 1 3.0003 -6.0438 -0.0041 27 1 3.1035 -8.5012 -0.0039 28 1 -1.2795 -6.2373 0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:50 Heat of formation + Delta-G solvation = -85.021190 kcal Electronic energy + Delta-G solvation = -23230.941810 eV Core-core repulsion = 18860.429429 eV Total energy + Delta-G solvation = -4370.512380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.14642 -47.66186 -47.59688 -43.25090 -39.46171 -36.74098 -34.29318 -34.06824 -32.10172 -31.57963 -29.70303 -26.76408 -26.00206 -23.90232 -22.62869 -21.39956 -20.89246 -18.83588 -18.48552 -18.39410 -17.47804 -16.57904 -16.05345 -15.63978 -15.57648 -14.95542 -14.65315 -14.58945 -14.26752 -14.04564 -13.87271 -13.76148 -13.61606 -13.61299 -13.40554 -12.73824 -12.12699 -11.89666 -11.88754 -11.68790 -11.59420 -11.56232 -10.99657 -10.62819 -10.36553 -10.34298 -9.99492 -9.38056 -9.21354 -8.97781 -8.14201 -7.23440 -5.20620 0.64455 0.97639 1.78840 2.61645 2.65843 2.88362 2.91508 2.94691 3.36456 3.62401 3.64031 3.94142 4.02437 4.39662 4.49536 4.65202 4.86289 5.02272 5.10859 5.18947 5.25443 5.61150 5.75751 5.95915 6.01237 6.50354 6.58441 6.70556 7.04444 7.67925 7.88521 8.09603 8.27374 9.74947 10.07235 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.003132 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.586501 B = 8938.403361 C = 9704.496787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.069 3.931 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.410 4.410 8 H 0.116 0.884 9 C 0.305 3.695 10 N -0.604 5.604 11 C 0.180 3.820 12 C 0.029 3.971 13 C -0.043 4.043 14 C -0.113 4.113 15 C 0.002 3.998 16 Cl -0.055 7.055 17 C -0.182 4.182 18 C 0.512 3.488 19 F -0.172 7.172 20 F -0.172 7.172 21 F -0.172 7.172 22 C -0.041 4.041 23 N -0.447 5.447 24 O 0.058 5.942 25 H 0.295 0.705 26 H 0.155 0.845 27 H 0.148 0.852 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -11.702 0.000 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.156 4.156 3 Si 0.761 3.239 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.448 4.448 8 H 0.134 0.866 9 C 0.116 3.884 10 N -0.348 5.348 11 C -0.090 4.090 12 C 0.027 3.973 13 C -0.063 4.063 14 C -0.131 4.131 15 C -0.025 4.025 16 Cl -0.026 7.026 17 C -0.185 4.185 18 C 0.458 3.542 19 F -0.154 7.154 20 F -0.154 7.154 21 F -0.153 7.153 22 C -0.061 4.061 23 N -0.174 5.174 24 O 0.006 5.994 25 H 0.106 0.894 26 H 0.173 0.827 27 H 0.165 0.835 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.644 -12.321 0.005 12.338 hybrid contribution 0.069 0.672 -0.006 0.676 sum 0.713 -11.649 -0.002 11.671 Atomic orbital electron populations 1.69622 1.07824 1.31195 1.29974 1.26231 0.95178 1.02469 0.91767 0.85792 0.80112 0.78253 0.79777 1.18749 1.19605 1.17880 1.18636 0.95168 0.85335 1.45665 0.86620 1.24139 0.79612 0.93855 0.90792 1.72340 1.27317 0.98382 1.36790 1.23024 0.87387 0.94092 1.04476 1.17560 0.92670 0.88426 0.98666 1.21508 0.98627 0.93061 0.93132 1.20993 0.96990 0.93426 1.01712 1.20631 0.93787 0.85232 1.02894 1.98394 1.98707 1.08868 1.96632 1.19649 0.91218 0.94469 1.13116 1.18051 0.83916 0.78051 0.74174 1.93196 1.55923 1.70034 1.96221 1.93224 1.96757 1.74579 1.50791 1.93222 1.96757 1.74497 1.50872 1.21055 1.00348 0.90452 0.94268 1.74606 1.23787 0.91165 1.27806 1.85537 1.25903 1.17437 1.70531 0.89391 0.82726 0.83453 0.82846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.27 12.05 55.57 0.67 -17.60 15 2 C 0.07 1.58 5.50 -17.28 -0.10 1.48 15 3 Si 0.94 16.49 29.56 -169.99 -5.03 11.47 15 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 5 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 6 H -0.26 -4.39 7.11 56.52 0.40 -3.99 15 7 C -0.41 -10.12 9.48 -37.95 -0.36 -10.48 15 8 H 0.12 2.66 7.85 -52.49 -0.41 2.25 15 9 C 0.31 8.14 7.80 -16.33 -0.13 8.01 15 10 N -0.60 -15.30 11.29 -11.62 -0.13 -15.44 15 11 C 0.18 4.28 7.78 -156.52 -1.22 3.07 15 12 C 0.03 0.54 5.88 -104.88 -0.62 -0.08 15 13 C -0.04 -0.67 9.69 -39.27 -0.38 -1.05 15 14 C -0.11 -1.44 9.82 -39.59 -0.39 -1.83 15 15 C 0.00 0.03 6.26 -39.43 -0.25 -0.22 15 16 Cl -0.06 -0.67 26.57 -51.86 -1.38 -2.05 15 17 C -0.18 -2.74 5.37 -104.63 -0.56 -3.30 15 18 C 0.51 7.34 2.86 36.01 0.10 7.44 15 19 F -0.17 -2.55 15.97 2.25 0.04 -2.51 15 20 F -0.17 -2.41 16.38 2.25 0.04 -2.37 15 21 F -0.17 -2.41 16.38 2.25 0.04 -2.37 15 22 C -0.04 -0.70 9.07 -39.26 -0.36 -1.06 15 23 N -0.45 -11.51 11.84 31.47 0.37 -11.13 15 24 O 0.06 1.58 9.72 15.15 0.15 1.73 15 25 H 0.29 6.26 8.29 -40.82 -0.34 5.92 15 26 H 0.16 2.35 7.86 -52.49 -0.41 1.94 15 27 H 0.15 1.42 8.06 -52.49 -0.42 0.99 15 28 H 0.15 2.69 6.95 -52.49 -0.36 2.33 15 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -27.00 289.59 -5.86 -32.87 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -0.75 Total: 1.05 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -4.25 Total: 1.99 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.91 Total: -44.17 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.15 Total: 1.73 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.11 Total: -7.26 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.47 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.38 Total: -2.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.00 -5.86 -32.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.154 kcal (2) G-P(sol) polarization free energy of solvation -27.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds