Wall clock time and date at job start Tue Mar 31 2020 12:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30511 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48505 * 109.47055 * 240.00326 * 3 2 1 5 5 H 1.48497 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47157 * 120.00065 * 3 2 1 7 7 C 1.40432 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00714 * 179.97438 * 7 2 1 9 9 C 1.40371 * 119.99700 * 0.02562 * 7 2 1 10 10 N 1.33192 * 126.68224 * 180.02562 * 9 7 2 11 11 C 1.34296 * 105.47839 * 179.97438 * 10 9 7 12 12 C 1.48459 * 126.19848 * 180.02562 * 11 10 9 13 13 C 1.39313 * 120.11550 * 359.97438 * 12 11 10 14 14 C 1.38120 * 119.86984 * 179.97438 * 13 12 11 15 15 Cl 1.73605 * 119.95397 * 180.02562 * 14 13 12 16 16 C 1.38454 * 120.09027 * 0.02832 * 14 13 12 17 17 C 1.38269 * 120.22711 * 359.97438 * 16 14 13 18 18 C 1.50701 * 119.93710 * 180.02562 * 17 16 14 19 19 F 1.39901 * 109.46911 * 359.97438 * 18 17 16 20 20 F 1.39895 * 109.47214 * 119.99291 * 18 17 16 21 21 F 1.39896 * 109.47148 * 239.99918 * 18 17 16 22 22 C 1.38062 * 120.13233 * 359.67461 * 17 16 14 23 23 N 1.31257 * 107.59904 * 359.97438 * 11 10 9 24 24 O 1.21273 * 110.52741 * 0.02562 * 23 11 10 25 25 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.06079 * 0.03024 * 13 12 11 27 27 H 1.08001 * 119.88362 * 179.97438 * 16 14 13 28 28 H 1.07996 * 120.04904 * 180.30266 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 3.0928 1.6964 -1.2126 5 1 1.2741 2.7464 0.0006 6 1 3.0929 1.6964 1.2125 7 6 2.0073 -1.2161 -0.0005 8 1 3.0874 -1.2162 -0.0010 9 6 1.3055 -2.4318 -0.0016 10 7 1.8327 -3.6549 -0.0018 11 6 0.7860 -4.4964 -0.0024 12 6 0.8533 -5.9794 -0.0022 13 6 2.0889 -6.6231 -0.0019 14 6 2.1455 -8.0031 -0.0012 15 17 3.6840 -8.8075 -0.0002 16 6 0.9771 -8.7459 -0.0014 17 6 -0.2513 -8.1110 -0.0018 18 6 -1.5190 -8.9259 -0.0015 19 9 -1.1980 -10.2876 -0.0014 20 9 -2.2678 -8.6229 1.1407 21 9 -2.2678 -8.6239 -1.1439 22 6 -0.3188 -6.7321 0.0048 23 7 -0.3072 -3.7699 -0.0020 24 8 -0.0328 -2.5886 -0.0018 25 1 -0.4850 0.8401 0.0004 26 1 3.0005 -6.0440 -0.0013 27 1 1.0253 -9.8248 -0.0013 28 1 -1.2789 -6.2377 0.0095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386302.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:22 Heat of formation + Delta-G solvation = -88.777016 kcal Electronic energy + Delta-G solvation = -23048.017733 eV Core-core repulsion = 18677.342488 eV Total energy + Delta-G solvation = -4370.675245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.012 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.23244 -47.76320 -47.66467 -43.25191 -39.46679 -36.62809 -34.29097 -34.16638 -31.98504 -31.50938 -29.79075 -26.78423 -26.08747 -23.99053 -22.56952 -21.40764 -20.88484 -18.87532 -18.54099 -18.43188 -17.49398 -16.36176 -16.05513 -15.62846 -15.59013 -15.15458 -14.89372 -14.59572 -14.36425 -14.12572 -13.91050 -13.84064 -13.66813 -13.63394 -13.36636 -12.71825 -12.11313 -11.84110 -11.83028 -11.67226 -11.57659 -11.54848 -11.04689 -10.65297 -10.51592 -10.34673 -10.00623 -9.21033 -9.17758 -8.96539 -8.20867 -7.22884 -5.20290 0.72590 0.88020 1.90385 2.58126 2.67226 2.88688 2.90624 2.92731 3.35551 3.59383 3.63578 3.92117 4.00733 4.35489 4.40967 4.81279 4.86722 4.92518 5.09832 5.14497 5.24518 5.37677 5.85548 5.90423 6.01509 6.42970 6.54064 6.70923 7.03575 7.68128 7.88719 8.09751 8.27678 9.75442 10.07153 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.003496 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.714252 B = 8006.305167 C = 9430.523975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.410 4.410 8 H 0.116 0.884 9 C 0.306 3.694 10 N -0.603 5.603 11 C 0.182 3.818 12 C 0.037 3.963 13 C -0.045 4.045 14 C -0.040 4.040 15 Cl -0.058 7.058 16 C -0.070 4.070 17 C -0.177 4.177 18 C 0.515 3.485 19 F -0.178 7.178 20 F -0.173 7.173 21 F -0.173 7.173 22 C -0.043 4.043 23 N -0.447 5.447 24 O 0.058 5.942 25 H 0.295 0.705 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 -11.804 0.007 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.156 4.156 3 Si 0.761 3.239 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.448 4.448 8 H 0.134 0.866 9 C 0.117 3.883 10 N -0.348 5.348 11 C -0.089 4.089 12 C 0.035 3.965 13 C -0.066 4.066 14 C -0.067 4.067 15 Cl -0.029 7.029 16 C -0.089 4.089 17 C -0.179 4.179 18 C 0.461 3.539 19 F -0.159 7.159 20 F -0.155 7.155 21 F -0.155 7.155 22 C -0.064 4.064 23 N -0.173 5.173 24 O 0.006 5.994 25 H 0.107 0.893 26 H 0.174 0.826 27 H 0.165 0.835 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.441 -12.331 0.007 12.339 hybrid contribution 0.219 0.746 0.000 0.777 sum 0.660 -11.586 0.007 11.604 Atomic orbital electron populations 1.69607 1.07819 1.31305 1.29912 1.26222 0.95176 1.02449 0.91755 0.85844 0.79662 0.77878 0.80540 1.18237 1.19744 1.18244 1.18604 0.95169 0.85346 1.45662 0.86639 1.24124 0.79585 0.93833 0.90791 1.72361 1.27294 0.98390 1.36740 1.22961 0.87449 0.93915 1.04552 1.17298 0.91918 0.88409 0.98856 1.21398 0.99325 0.91842 0.94005 1.20548 0.86968 0.92434 1.06706 1.98375 1.28083 1.79446 1.97006 1.20783 0.89447 1.00908 0.97777 1.19648 0.92090 0.94259 1.11894 1.18087 0.84189 0.77600 0.74027 1.93158 1.92656 1.33808 1.96269 1.93234 1.78433 1.92888 1.50908 1.93234 1.78431 1.92914 1.50884 1.21027 0.99963 0.91245 0.94125 1.74598 1.23699 0.91162 1.27877 1.85533 1.25909 1.17395 1.70560 0.89333 0.82622 0.83481 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.32 12.05 55.57 0.67 -17.65 15 2 C 0.07 1.59 5.50 -17.29 -0.10 1.50 15 3 Si 0.94 16.59 29.56 -169.99 -5.03 11.57 15 4 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15 5 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 6 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15 7 C -0.41 -10.18 9.48 -37.95 -0.36 -10.54 15 8 H 0.12 2.67 7.85 -52.49 -0.41 2.26 15 9 C 0.31 8.20 7.80 -16.32 -0.13 8.07 15 10 N -0.60 -15.48 11.30 -11.63 -0.13 -15.61 15 11 C 0.18 4.34 7.78 -156.52 -1.22 3.12 15 12 C 0.04 0.71 5.88 -104.89 -0.62 0.09 15 13 C -0.05 -0.75 9.48 -39.22 -0.37 -1.12 15 14 C -0.04 -0.55 6.31 -39.54 -0.25 -0.80 15 15 Cl -0.06 -0.70 28.95 -51.86 -1.50 -2.20 15 16 C -0.07 -0.89 9.21 -39.49 -0.36 -1.25 15 17 C -0.18 -2.49 5.37 -104.67 -0.56 -3.05 15 18 C 0.52 6.71 3.31 36.01 0.12 6.83 15 19 F -0.18 -2.11 15.96 2.25 0.04 -2.07 15 20 F -0.17 -2.36 17.23 2.25 0.04 -2.32 15 21 F -0.17 -2.36 17.24 2.25 0.04 -2.32 15 22 C -0.04 -0.73 9.23 -39.25 -0.36 -1.09 15 23 N -0.45 -11.50 11.84 31.47 0.37 -11.13 15 24 O 0.06 1.59 9.72 15.16 0.15 1.74 15 25 H 0.30 6.31 8.29 -40.82 -0.34 5.97 15 26 H 0.16 2.63 7.86 -52.48 -0.41 2.22 15 27 H 0.15 1.53 7.14 -52.49 -0.37 1.15 15 28 H 0.15 2.50 7.86 -52.49 -0.41 2.09 15 LS Contribution 293.53 15.07 4.42 4.42 Total: -1.00 -26.68 293.53 -5.88 -32.56 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -0.75 Total: 1.25 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -4.21 Total: 1.76 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.91 Total: -44.38 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.15 Total: 1.74 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.11 Total: -6.71 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.57 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.68 -5.88 -32.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386302.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.214 kcal (2) G-P(sol) polarization free energy of solvation -26.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds