Wall clock time and date at job start Tue Mar 31 2020 12:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30511 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48505 * 109.47055 * 240.00326 * 3 2 1 5 5 H 1.48497 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47157 * 120.00065 * 3 2 1 7 7 C 1.40432 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00714 * 179.97438 * 7 2 1 9 9 C 1.40371 * 119.99700 * 0.02562 * 7 2 1 10 10 N 1.33192 * 126.68224 * 180.02562 * 9 7 2 11 11 C 1.34296 * 105.47839 * 179.97438 * 10 9 7 12 12 C 1.48459 * 126.19848 * 180.02562 * 11 10 9 13 13 C 1.39313 * 120.11550 * 359.97438 * 12 11 10 14 14 C 1.38120 * 119.86984 * 179.97438 * 13 12 11 15 15 Cl 1.73605 * 119.95397 * 180.02562 * 14 13 12 16 16 C 1.38454 * 120.09027 * 0.02832 * 14 13 12 17 17 C 1.38269 * 120.22711 * 359.97438 * 16 14 13 18 18 C 1.50701 * 119.93710 * 180.02562 * 17 16 14 19 19 F 1.39901 * 109.46911 * 359.97438 * 18 17 16 20 20 F 1.39895 * 109.47214 * 119.99291 * 18 17 16 21 21 F 1.39896 * 109.47148 * 239.99918 * 18 17 16 22 22 C 1.38062 * 120.13233 * 359.67461 * 17 16 14 23 23 N 1.31257 * 107.59904 * 359.97438 * 11 10 9 24 24 O 1.21273 * 110.52741 * 0.02562 * 23 11 10 25 25 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.06079 * 0.03024 * 13 12 11 27 27 H 1.08001 * 119.88362 * 179.97438 * 16 14 13 28 28 H 1.07996 * 120.04904 * 180.30266 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 3.0928 1.6964 -1.2126 5 1 1.2741 2.7464 0.0006 6 1 3.0929 1.6964 1.2125 7 6 2.0073 -1.2161 -0.0005 8 1 3.0874 -1.2162 -0.0010 9 6 1.3055 -2.4318 -0.0016 10 7 1.8327 -3.6549 -0.0018 11 6 0.7860 -4.4964 -0.0024 12 6 0.8533 -5.9794 -0.0022 13 6 2.0889 -6.6231 -0.0019 14 6 2.1455 -8.0031 -0.0012 15 17 3.6840 -8.8075 -0.0002 16 6 0.9771 -8.7459 -0.0014 17 6 -0.2513 -8.1110 -0.0018 18 6 -1.5190 -8.9259 -0.0015 19 9 -1.1980 -10.2876 -0.0014 20 9 -2.2678 -8.6229 1.1407 21 9 -2.2678 -8.6239 -1.1439 22 6 -0.3188 -6.7321 0.0048 23 7 -0.3072 -3.7699 -0.0020 24 8 -0.0328 -2.5886 -0.0018 25 1 -0.4850 0.8401 0.0004 26 1 3.0005 -6.0440 -0.0013 27 1 1.0253 -9.8248 -0.0013 28 1 -1.2789 -6.2377 0.0095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247386302.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:22 Heat of formation + Delta-G solvation = -103.880127 kcal Electronic energy + Delta-G solvation = -23048.672653 eV Core-core repulsion = 18677.342488 eV Total energy + Delta-G solvation = -4371.330165 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.012 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.28475 -48.78408 -48.74261 -45.13375 -40.72776 -37.71675 -36.13478 -35.90829 -33.46694 -32.92554 -31.41423 -28.62475 -27.28692 -25.48612 -24.08192 -22.97033 -22.48517 -20.36476 -19.59947 -19.49584 -18.97976 -17.99300 -17.60278 -17.38261 -17.04914 -16.45990 -16.30894 -15.66071 -15.49067 -15.28820 -15.16558 -14.97066 -14.90229 -14.85656 -14.80261 -13.90275 -13.73066 -13.52137 -13.11200 -13.07882 -13.03336 -12.83703 -12.29182 -12.18177 -12.09810 -12.01170 -11.63811 -11.14883 -10.77227 -10.27352 -9.83119 -8.98921 -7.15052 -0.54644 -0.38497 0.78412 0.95121 1.41600 1.46162 1.48183 1.59960 1.82374 2.14522 2.38526 2.48714 2.70960 2.99672 3.03399 3.23039 3.27083 3.65364 3.68491 3.77612 3.84859 4.13249 4.36286 4.65955 4.72258 4.91044 5.08665 5.11105 5.31477 5.77968 5.98319 6.19574 6.39343 8.01028 8.15078 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.003496 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.714252 B = 8006.305167 C = 9430.523975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.029 3.971 3 Si 1.021 2.979 4 H -0.250 1.250 5 H -0.261 1.261 6 H -0.250 1.250 7 C -0.426 4.426 8 H 0.127 0.873 9 C 0.274 3.726 10 N -0.624 5.624 11 C 0.193 3.807 12 C 0.001 3.999 13 C -0.042 4.042 14 C -0.034 4.034 15 Cl -0.033 7.033 16 C -0.043 4.043 17 C -0.173 4.173 18 C 0.524 3.476 19 F -0.165 7.165 20 F -0.176 7.176 21 F -0.176 7.176 22 C -0.042 4.042 23 N -0.475 5.475 24 O 0.022 5.978 25 H 0.308 0.692 26 H 0.147 0.853 27 H 0.183 0.817 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -12.805 0.007 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.194 4.194 3 Si 0.837 3.163 4 H -0.173 1.173 5 H -0.185 1.185 6 H -0.174 1.174 7 C -0.463 4.463 8 H 0.144 0.856 9 C 0.086 3.914 10 N -0.369 5.369 11 C -0.079 4.079 12 C -0.001 4.001 13 C -0.063 4.063 14 C -0.061 4.061 15 Cl -0.004 7.004 16 C -0.062 4.062 17 C -0.174 4.174 18 C 0.470 3.530 19 F -0.146 7.146 20 F -0.158 7.158 21 F -0.158 7.158 22 C -0.063 4.063 23 N -0.208 5.208 24 O -0.023 6.023 25 H 0.119 0.881 26 H 0.165 0.835 27 H 0.200 0.800 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.596 -13.319 0.008 13.414 hybrid contribution -0.103 0.899 0.000 0.905 sum 1.493 -12.420 0.008 12.510 Atomic orbital electron populations 1.69672 1.09729 1.33232 1.29224 1.27381 0.95909 1.05824 0.90251 0.84664 0.78259 0.72402 0.80962 1.17345 1.18450 1.17354 1.19172 0.95953 0.85877 1.45321 0.85564 1.24734 0.79900 0.95018 0.91727 1.72331 1.28013 0.98472 1.38061 1.23688 0.86497 0.95990 1.01692 1.17290 0.93864 0.86110 1.02875 1.21304 0.97972 0.93104 0.93909 1.20517 0.88479 0.91424 1.05694 1.98391 1.26586 1.78638 1.96813 1.21160 0.88228 1.02441 0.94415 1.19698 0.93366 0.93155 1.11212 1.17830 0.83500 0.77879 0.73822 1.93186 1.92510 1.32685 1.96201 1.93236 1.78446 1.92988 1.51086 1.93236 1.78445 1.93014 1.51066 1.20918 0.98771 0.92392 0.94176 1.74516 1.24529 0.90915 1.30843 1.85467 1.26218 1.18313 1.72303 0.88089 0.83519 0.80002 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.96 12.05 21.91 0.26 -38.69 15 2 C 0.03 1.33 5.50 85.42 0.47 1.80 15 3 Si 1.02 33.00 29.56 68.60 2.03 35.03 15 4 H -0.25 -7.72 7.11 99.48 0.71 -7.02 15 5 H -0.26 -7.86 7.11 99.48 0.71 -7.16 15 6 H -0.25 -7.73 7.11 99.48 0.71 -7.02 15 7 C -0.43 -21.71 9.48 23.32 0.22 -21.49 15 8 H 0.13 5.93 7.85 -2.91 -0.02 5.91 15 9 C 0.27 15.38 7.80 85.06 0.66 16.04 15 10 N -0.62 -33.47 11.30 -305.09 -3.45 -36.92 15 11 C 0.19 9.66 7.78 137.45 1.07 10.73 15 12 C 0.00 0.03 5.88 -20.04 -0.12 -0.09 15 13 C -0.04 -1.39 9.48 22.50 0.21 -1.17 15 14 C -0.03 -0.87 6.31 22.29 0.14 -0.73 15 15 Cl -0.03 -0.72 28.95 -2.72 -0.08 -0.79 15 16 C -0.04 -0.97 9.21 22.33 0.21 -0.77 15 17 C -0.17 -4.55 5.37 -19.90 -0.11 -4.65 15 18 C 0.52 12.53 3.31 71.24 0.24 12.77 15 19 F -0.16 -3.35 15.96 44.97 0.72 -2.63 15 20 F -0.18 -4.53 17.23 44.97 0.77 -3.75 15 21 F -0.18 -4.53 17.24 44.97 0.78 -3.75 15 22 C -0.04 -1.42 9.23 22.48 0.21 -1.21 15 23 N -0.48 -25.91 11.84 -56.07 -0.66 -26.57 15 24 O 0.02 1.30 9.72 64.33 0.63 1.92 15 25 H 0.31 13.21 8.29 -92.71 -0.77 12.44 15 26 H 0.15 5.03 7.86 -2.91 -0.02 5.01 15 27 H 0.18 2.89 7.14 -2.91 -0.02 2.87 15 28 H 0.14 4.82 7.86 -2.91 -0.02 4.79 15 Total: -1.00 -60.58 293.53 5.46 -55.11 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.26 Total: 9.83 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 3.20 Total: 11.22 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -3.85 Total: -102.19 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.63 Total: 1.92 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 2.27 Total: -10.14 kcal Atomic # 14 Polarization: 33.00 SS G_CDS: 2.03 Total: 35.03 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.79 kcal Total: -60.58 5.46 -55.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386302.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.767 kcal (2) G-P(sol) polarization free energy of solvation -60.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds