Wall clock time and date at job start Tue Mar 31 2020 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86805 * 120.00235 * 2 1 4 4 H 1.48492 * 109.47130 * 274.98513 * 3 2 1 5 5 H 1.48505 * 109.46579 * 34.98173 * 3 2 1 6 6 H 1.48497 * 109.46985 * 154.98083 * 3 2 1 7 7 C 1.40054 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99869 * 186.15499 * 7 2 1 9 9 C 1.46371 * 119.99984 * 6.15422 * 7 2 1 10 10 O 1.21690 * 120.00132 * 353.93500 * 9 7 2 11 11 N 1.34776 * 120.00037 * 173.93637 * 9 7 2 12 12 N 1.40098 * 119.99962 * 179.97438 * 11 9 7 13 13 C 1.39723 * 120.00039 * 180.02562 * 12 11 9 14 14 C 1.38875 * 120.07058 * 0.02562 * 13 12 11 15 15 C 1.38219 * 119.92684 * 179.97438 * 14 13 12 16 16 Cl 1.73593 * 119.97298 * 180.02562 * 15 14 13 17 17 C 1.38422 * 120.06053 * 0.02562 * 15 14 13 18 18 C 1.38258 * 120.14077 * 359.95905 * 17 15 14 19 19 C 1.38192 * 120.07682 * 0.04394 * 18 17 15 20 20 Br 1.89101 * 120.03037 * 180.25157 * 19 18 17 21 21 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99752 * 0.02562 * 11 9 7 23 23 H 0.97002 * 120.00286 * 0.02562 * 12 11 9 24 24 H 1.07999 * 120.03474 * 359.95738 * 14 13 12 25 25 H 1.07993 * 119.92837 * 179.97438 * 17 15 14 26 26 H 1.07995 * 119.96133 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0822 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4828 -0.1367 11 7 1.9610 -3.6343 -0.2572 12 7 1.2666 -4.8442 -0.3862 13 6 1.9711 -6.0441 -0.5126 14 6 3.3599 -6.0392 -0.5100 15 6 4.0539 -7.2280 -0.6346 16 17 5.7898 -7.2233 -0.6308 17 6 3.3660 -8.4224 -0.7625 18 6 1.9834 -8.4304 -0.7651 19 6 1.2838 -7.2451 -0.6409 20 35 -0.6072 -7.2583 -0.6375 21 1 -0.4850 0.8401 -0.0004 22 1 2.9310 -3.6296 -0.2552 23 1 0.2966 -4.8489 -0.3878 24 1 3.8970 -5.1075 -0.4109 25 1 3.9104 -9.3499 -0.8602 26 1 1.4497 -9.3639 -0.8646 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303450417.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:37 Heat of formation + Delta-G solvation = 16.419570 kcal Electronic energy + Delta-G solvation = -15807.750392 eV Core-core repulsion = 12766.633018 eV Total energy + Delta-G solvation = -3041.117374 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.951 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.60134 -37.66507 -36.54551 -34.89677 -32.70946 -32.20793 -31.04625 -29.39403 -27.94975 -26.03661 -22.78274 -22.01481 -20.32927 -18.54185 -17.00265 -16.57858 -15.75172 -15.44981 -14.88862 -14.42174 -14.18432 -13.93923 -13.54681 -13.08698 -12.71545 -12.17558 -12.02338 -11.52168 -11.40162 -11.29222 -10.96662 -10.92705 -10.73702 -10.41455 -10.39469 -10.16689 -9.09769 -8.79752 -8.53780 -8.05018 -6.73030 -6.46168 -4.90897 1.01993 1.47584 1.73126 2.09033 2.78838 3.02923 3.11726 3.15870 3.57550 3.98947 4.33482 4.69383 4.87715 5.14025 5.36720 5.47693 5.50618 5.80201 5.92338 6.18235 6.25606 6.57352 7.10125 7.21377 7.76907 8.02140 8.39569 8.75691 9.06208 10.27490 10.46789 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.004784 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.819084 B = 5851.432830 C = 7926.987347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.553 3.447 10 O -0.574 6.574 11 N -0.565 5.565 12 N -0.510 5.510 13 C 0.270 3.730 14 C -0.200 4.200 15 C 0.041 3.959 16 Cl -0.071 7.071 17 C -0.192 4.192 18 C -0.018 4.018 19 C -0.186 4.186 20 Br -0.049 7.049 21 H 0.273 0.727 22 H 0.404 0.596 23 H 0.435 0.565 24 H 0.137 0.863 25 H 0.134 0.866 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -15.315 -1.622 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.134 4.134 3 Si 0.742 3.258 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.359 3.641 10 O -0.455 6.455 11 N -0.317 5.317 12 N -0.226 5.226 13 C 0.152 3.848 14 C -0.225 4.225 15 C 0.013 3.987 16 Cl -0.042 7.042 17 C -0.215 4.215 18 C -0.038 4.038 19 C -0.272 4.272 20 Br 0.035 6.965 21 H 0.084 0.916 22 H 0.244 0.756 23 H 0.280 0.720 24 H 0.155 0.845 25 H 0.152 0.848 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.656 -14.882 -1.578 15.405 hybrid contribution 1.090 0.764 -0.015 1.331 sum 4.745 -14.118 -1.593 14.979 Atomic orbital electron populations 1.70007 1.07202 1.27987 1.33567 1.25724 0.94761 1.00508 0.92425 0.86179 0.80137 0.80579 0.78913 1.19550 1.20225 1.18609 1.20656 0.94396 0.87967 1.54030 0.90574 1.18687 0.87671 0.80595 0.77191 1.90639 1.13744 1.85198 1.55880 1.46076 1.07138 0.95729 1.82732 1.43979 1.07709 0.96481 1.74387 1.17252 0.90761 0.84510 0.92243 1.20205 0.91313 0.98112 1.12913 1.20610 0.84037 0.94516 0.99514 1.98366 1.10199 1.98942 1.96677 1.20595 0.93349 0.96789 1.10730 1.20674 0.93123 0.95958 0.94083 1.21010 0.90127 0.94581 1.21495 1.96671 1.02924 1.98737 1.98126 0.91598 0.75620 0.71967 0.84525 0.84843 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.63 11.85 55.55 0.66 -20.97 15 2 C 0.09 2.30 5.49 -17.37 -0.10 2.20 15 3 Si 0.92 19.01 29.56 -169.99 -5.03 13.99 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 7 C -0.53 -14.08 9.54 -35.63 -0.34 -14.42 15 8 H 0.08 1.81 7.85 -52.49 -0.41 1.39 15 9 C 0.55 14.96 7.86 -12.99 -0.10 14.85 15 10 O -0.57 -17.70 14.88 5.20 0.08 -17.62 15 11 N -0.56 -12.32 6.21 30.19 0.19 -12.14 15 12 N -0.51 -10.17 6.40 32.43 0.21 -9.96 15 13 C 0.27 4.48 6.71 -83.75 -0.56 3.91 15 14 C -0.20 -2.99 9.26 -39.35 -0.36 -3.35 15 15 C 0.04 0.54 6.32 -39.52 -0.25 0.29 15 16 Cl -0.07 -0.83 28.95 -51.86 -1.50 -2.33 15 17 C -0.19 -2.22 9.83 -39.51 -0.39 -2.61 15 18 C -0.02 -0.21 9.78 -39.59 -0.39 -0.60 15 19 C -0.19 -2.72 6.24 -39.32 -0.25 -2.97 15 20 Br -0.05 -0.71 32.12 -68.01 -2.18 -2.89 15 21 H 0.27 7.02 8.29 -40.82 -0.34 6.68 15 22 H 0.40 7.61 6.58 -182.60 -1.20 6.41 15 23 H 0.43 9.19 6.40 -182.60 -1.17 8.02 15 24 H 0.14 1.98 6.20 -52.49 -0.33 1.66 15 25 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 15 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -30.55 273.77 -9.28 -39.82 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -3.09 Total: 10.67 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.73 Total: -2.70 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 1.05 Total: -43.07 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.08 Total: -17.62 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.18 Total: -2.89 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.55 -9.28 -39.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303450417.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.244 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds