Wall clock time and date at job start Tue Mar 31 2020 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86805 * 120.00235 * 2 1 4 4 H 1.48492 * 109.47130 * 274.98513 * 3 2 1 5 5 H 1.48505 * 109.46579 * 34.98173 * 3 2 1 6 6 H 1.48497 * 109.46985 * 154.98083 * 3 2 1 7 7 C 1.40054 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99869 * 186.15499 * 7 2 1 9 9 C 1.46371 * 119.99984 * 6.15422 * 7 2 1 10 10 O 1.21690 * 120.00132 * 353.93500 * 9 7 2 11 11 N 1.34776 * 120.00037 * 173.93637 * 9 7 2 12 12 N 1.40098 * 119.99962 * 179.97438 * 11 9 7 13 13 C 1.39723 * 120.00039 * 180.02562 * 12 11 9 14 14 C 1.38875 * 120.07058 * 0.02562 * 13 12 11 15 15 C 1.38219 * 119.92684 * 179.97438 * 14 13 12 16 16 Cl 1.73593 * 119.97298 * 180.02562 * 15 14 13 17 17 C 1.38422 * 120.06053 * 0.02562 * 15 14 13 18 18 C 1.38258 * 120.14077 * 359.95905 * 17 15 14 19 19 C 1.38192 * 120.07682 * 0.04394 * 18 17 15 20 20 Br 1.89101 * 120.03037 * 180.25157 * 19 18 17 21 21 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99752 * 0.02562 * 11 9 7 23 23 H 0.97002 * 120.00286 * 0.02562 * 12 11 9 24 24 H 1.07999 * 120.03474 * 359.95738 * 14 13 12 25 25 H 1.07993 * 119.92837 * 179.97438 * 17 15 14 26 26 H 1.07995 * 119.96133 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0822 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4828 -0.1367 11 7 1.9610 -3.6343 -0.2572 12 7 1.2666 -4.8442 -0.3862 13 6 1.9711 -6.0441 -0.5126 14 6 3.3599 -6.0392 -0.5100 15 6 4.0539 -7.2280 -0.6346 16 17 5.7898 -7.2233 -0.6308 17 6 3.3660 -8.4224 -0.7625 18 6 1.9834 -8.4304 -0.7651 19 6 1.2838 -7.2451 -0.6409 20 35 -0.6072 -7.2583 -0.6375 21 1 -0.4850 0.8401 -0.0004 22 1 2.9310 -3.6296 -0.2552 23 1 0.2966 -4.8489 -0.3878 24 1 3.8970 -5.1075 -0.4109 25 1 3.9104 -9.3499 -0.8602 26 1 1.4497 -9.3639 -0.8646 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001303450417.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:37 Heat of formation + Delta-G solvation = -3.403606 kcal Electronic energy + Delta-G solvation = -15808.609989 eV Core-core repulsion = 12766.633018 eV Total energy + Delta-G solvation = -3041.976971 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.951 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.85518 -39.41227 -37.63752 -36.46057 -34.69866 -33.43167 -32.52396 -30.59135 -29.39636 -27.83141 -24.06400 -23.21053 -22.06539 -20.09398 -18.55196 -18.21812 -17.25866 -16.87531 -16.09499 -15.96705 -15.57845 -15.27710 -14.78590 -14.70333 -14.53810 -13.39329 -13.32364 -13.00386 -12.88833 -12.71887 -12.57386 -12.42239 -12.03282 -11.94714 -11.49733 -11.30224 -10.99384 -10.20664 -10.15153 -9.73333 -8.41900 -8.25899 -6.95101 -0.08646 0.35771 0.59622 1.01908 1.29043 1.41735 1.45863 1.60626 2.25877 2.33977 2.50377 3.48050 3.53978 3.61378 4.09137 4.24753 4.35629 4.67303 4.76712 5.10958 5.18568 5.25357 5.33530 5.58182 5.94454 6.29199 6.70366 6.78052 7.24948 8.31052 8.54159 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.004784 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.819084 B = 5851.432830 C = 7926.987347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.031 3.969 3 Si 1.005 2.995 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.558 4.558 8 H 0.099 0.901 9 C 0.539 3.461 10 O -0.624 6.624 11 N -0.555 5.555 12 N -0.533 5.533 13 C 0.245 3.755 14 C -0.207 4.207 15 C 0.036 3.964 16 Cl -0.055 7.055 17 C -0.169 4.169 18 C -0.012 4.012 19 C -0.189 4.189 20 Br -0.051 7.051 21 H 0.279 0.721 22 H 0.417 0.583 23 H 0.425 0.575 24 H 0.135 0.865 25 H 0.169 0.831 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.605 -16.601 -1.837 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.185 4.185 3 Si 0.824 3.176 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.595 4.595 8 H 0.117 0.883 9 C 0.345 3.655 10 O -0.510 6.510 11 N -0.306 5.306 12 N -0.253 5.253 13 C 0.133 3.867 14 C -0.232 4.232 15 C 0.008 3.992 16 Cl -0.026 7.026 17 C -0.191 4.191 18 C -0.032 4.032 19 C -0.275 4.275 20 Br 0.033 6.967 21 H 0.089 0.911 22 H 0.259 0.741 23 H 0.268 0.732 24 H 0.152 0.848 25 H 0.186 0.814 26 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.065 -16.272 -1.801 17.458 hybrid contribution 0.474 0.875 0.031 0.996 sum 6.539 -15.397 -1.770 16.821 Atomic orbital electron populations 1.70166 1.09605 1.29493 1.35071 1.27002 0.95578 1.04908 0.91019 0.84889 0.78943 0.74556 0.79247 1.18749 1.19775 1.16791 1.21226 0.95635 0.88495 1.54175 0.88344 1.18972 0.87263 0.82280 0.77000 1.90587 1.15773 1.86444 1.58148 1.45395 1.07466 0.96169 1.81534 1.43909 1.07173 0.96313 1.77864 1.17525 0.91460 0.83938 0.93781 1.20298 0.90842 0.99053 1.13054 1.20754 0.85002 0.94364 0.99126 1.98378 1.08754 1.98908 1.96540 1.21060 0.93263 0.97484 1.07292 1.21093 0.93444 0.96104 0.92593 1.21293 0.90293 0.94873 1.21022 1.96677 1.03195 1.98685 1.98116 0.91142 0.74114 0.73166 0.84770 0.81392 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.92 11.85 21.84 0.26 -47.66 15 2 C 0.03 1.67 5.49 85.31 0.47 2.14 15 3 Si 1.00 38.84 29.56 68.60 2.03 40.87 15 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 6 H -0.24 -8.69 7.11 99.48 0.71 -7.98 15 7 C -0.56 -29.99 9.54 24.83 0.24 -29.75 15 8 H 0.10 4.64 7.85 -2.91 -0.02 4.61 15 9 C 0.54 30.30 7.86 86.36 0.68 30.98 15 10 O -0.62 -40.49 14.88 -4.32 -0.06 -40.56 15 11 N -0.55 -24.99 6.21 -176.63 -1.10 -26.09 15 12 N -0.53 -21.96 6.40 -51.32 -0.33 -22.28 15 13 C 0.24 8.08 6.71 38.21 0.26 8.34 15 14 C -0.21 -5.99 9.26 22.42 0.21 -5.78 15 15 C 0.04 0.83 6.32 22.31 0.14 0.98 15 16 Cl -0.05 -1.14 28.95 -2.72 -0.08 -1.22 15 17 C -0.17 -3.25 9.83 22.32 0.22 -3.03 15 18 C -0.01 -0.25 9.78 22.26 0.22 -0.03 15 19 C -0.19 -5.30 6.24 22.44 0.14 -5.16 15 20 Br -0.05 -1.46 32.12 -20.37 -0.65 -2.11 15 21 H 0.28 14.79 8.29 -92.71 -0.77 14.02 15 22 H 0.42 16.03 6.58 -213.32 -1.40 14.63 15 23 H 0.42 18.86 6.40 -213.32 -1.36 17.49 15 24 H 0.13 3.84 6.20 -2.91 -0.02 3.83 15 25 H 0.17 2.16 8.06 -2.91 -0.02 2.13 15 26 H 0.17 2.43 8.06 -2.91 -0.02 2.41 15 Total: -1.00 -68.97 273.77 1.13 -67.84 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -1.50 Total: 32.55 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 2.57 Total: -1.33 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -1.17 Total: -96.04 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.06 Total: -40.56 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Atomic # 35 Polarization: -1.46 SS G_CDS: -0.65 Total: -2.11 kcal Total: -68.97 1.13 -67.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303450417.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds