Wall clock time and date at job start Tue Mar 31 2020 11:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46652 * 2 1 4 4 C 1.52996 * 109.47208 * 240.00378 * 2 1 3 5 5 C 1.52998 * 109.47110 * 119.99661 * 2 1 3 6 6 N 1.46904 * 109.46901 * 89.76798 * 5 2 1 7 7 C 1.46894 * 110.99907 * 75.25723 * 6 5 2 8 8 C 1.50697 * 109.47227 * 83.43430 * 7 6 5 9 9 H 1.07997 * 120.00049 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.00087 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00055 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00191 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47011 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47457 * 119.99648 * 12 10 8 15 15 H 1.48495 * 109.47289 * 239.99886 * 12 10 8 16 16 C 1.46894 * 111.00022 * 311.30267 * 6 5 2 17 17 C 1.50701 * 109.47318 * 278.09410 * 16 6 5 18 18 C 1.38259 * 120.00157 * 77.89530 * 17 16 6 19 19 C 1.38214 * 119.99512 * 179.97438 * 18 17 16 20 20 C 1.38249 * 120.00670 * 0.02604 * 19 18 17 21 21 C 1.38220 * 119.99923 * 359.97438 * 20 19 18 22 22 C 1.50694 * 119.99887 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47476 * 0.02562 * 22 21 20 24 24 C 1.53008 * 109.46891 * 120.00207 * 22 21 20 25 25 C 1.52997 * 109.46926 * 239.99887 * 22 21 20 26 26 C 1.38217 * 119.99770 * 258.17925 * 17 16 6 27 27 H 1.08990 * 109.47547 * 293.16048 * 1 2 3 28 28 H 1.09000 * 109.47058 * 53.16558 * 1 2 3 29 29 H 1.09003 * 109.46456 * 173.15805 * 1 2 3 30 30 H 1.09007 * 109.46802 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47426 * 299.99830 * 3 2 1 32 32 H 1.08999 * 109.47472 * 60.00289 * 3 2 1 33 33 H 1.09002 * 109.47021 * 277.23869 * 4 2 1 34 34 H 1.08996 * 109.47807 * 37.24266 * 4 2 1 35 35 H 1.09004 * 109.47338 * 157.24757 * 4 2 1 36 36 H 1.08997 * 109.47057 * 329.76429 * 5 2 1 37 37 H 1.09007 * 109.47147 * 209.76329 * 5 2 1 38 38 H 1.09003 * 109.47183 * 203.43379 * 7 6 5 39 39 H 1.08999 * 109.47606 * 323.43319 * 7 6 5 40 40 H 0.96992 * 120.00170 * 180.02562 * 11 10 8 41 41 H 1.08996 * 109.47541 * 158.08853 * 16 6 5 42 42 H 1.09005 * 109.47109 * 38.08792 * 16 6 5 43 43 H 1.07997 * 120.00129 * 0.02562 * 18 17 16 44 44 H 1.08007 * 119.99420 * 180.02562 * 19 18 17 45 45 H 1.08004 * 120.00162 * 179.97438 * 20 19 18 46 46 H 1.08998 * 109.47079 * 60.00094 * 23 22 21 47 47 H 1.08995 * 109.47340 * 180.02562 * 23 22 21 48 48 H 1.09004 * 109.47019 * 300.00378 * 23 22 21 49 49 H 1.08996 * 109.46800 * 60.00130 * 24 22 21 50 50 H 1.09004 * 109.46735 * 179.97438 * 24 22 21 51 51 H 1.09001 * 109.46763 * 299.99430 * 24 22 21 52 52 H 1.08997 * 109.47443 * 60.00312 * 25 22 21 53 53 H 1.09004 * 109.47174 * 179.97438 * 25 22 21 54 54 H 1.09000 * 109.47441 * 299.99786 * 25 22 21 55 55 H 1.08003 * 120.00162 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 2.1979 -2.1524 0.9582 7 6 3.3948 -2.3946 0.1417 8 6 4.6055 -2.4719 1.0356 9 1 4.4968 -2.3526 2.1035 10 6 5.8521 -2.6950 0.4902 11 7 5.9844 -2.8408 -0.8102 12 14 7.3528 -2.7915 1.5982 13 1 6.9384 -2.5966 3.0109 14 1 7.9936 -4.1228 1.4490 15 1 8.3195 -1.7312 1.2158 16 6 0.9976 -2.6926 0.3061 17 6 -0.0406 -3.0126 1.3505 18 6 -0.7939 -1.9974 1.9103 19 6 -1.7464 -2.2911 2.8678 20 6 -1.9456 -3.5999 3.2662 21 6 -1.1925 -4.6148 2.7066 22 6 -1.4092 -6.0414 3.1413 23 6 -2.5102 -6.0896 4.2026 24 6 -1.8272 -6.8843 1.9347 25 6 -0.1104 -6.5987 3.7275 26 6 -0.2356 -4.3204 1.7531 27 1 -0.3634 0.4041 0.9447 28 1 -0.3633 0.6161 -0.8225 29 1 -0.3632 -1.0204 -0.1224 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.0390 -1.7969 -1.0736 34 1 1.3899 -0.4902 -2.0931 35 1 3.0547 -0.3903 -1.4711 36 1 1.3240 -0.5922 2.0609 37 1 3.0022 -0.3019 1.5435 38 1 3.2817 -3.3344 -0.3989 39 1 3.5202 -1.5788 -0.5702 40 1 6.8612 -2.9981 -1.1938 41 1 1.2572 -3.6005 -0.2383 42 1 0.5980 -1.9539 -0.3888 43 1 -0.6387 -0.9750 1.5988 44 1 -2.3352 -1.4980 3.3048 45 1 -2.6896 -3.8293 4.0147 46 1 -3.4353 -5.6926 3.7846 47 1 -2.6666 -7.1213 4.5173 48 1 -2.2128 -5.4889 5.0622 49 1 -1.0430 -6.8500 1.1785 50 1 -1.9835 -7.9162 2.2491 51 1 -2.7525 -6.4872 1.5172 52 1 0.1874 -5.9983 4.5870 53 1 -0.2673 -7.6304 4.0423 54 1 0.6737 -6.5645 2.9711 55 1 0.3563 -5.1129 1.3195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307485417.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:08 Heat of formation + Delta-G solvation = 54.963302 kcal Electronic energy + Delta-G solvation = -28602.272567 eV Core-core repulsion = 25219.402423 eV Total energy + Delta-G solvation = -3382.870143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.69858 -40.23831 -37.16467 -35.63086 -34.41104 -32.51350 -31.11481 -29.39249 -29.08370 -28.18548 -28.13581 -28.10206 -26.96517 -25.28493 -23.67841 -22.67782 -21.77874 -19.84568 -19.67801 -18.48029 -17.57997 -16.88125 -16.81471 -16.29728 -15.95609 -15.60166 -15.46159 -15.30679 -15.08885 -14.80774 -14.50643 -14.27156 -14.20285 -13.87425 -13.58509 -13.43141 -13.04303 -13.02715 -12.90178 -12.74870 -12.67280 -12.63330 -12.53099 -12.48455 -12.40203 -12.22156 -12.16612 -12.12016 -11.82723 -11.78884 -11.60981 -11.47645 -11.42305 -11.24664 -11.07983 -10.87963 -10.48062 -9.53398 -9.36930 -8.65782 -8.11138 -6.21183 0.61164 0.64719 1.37317 1.38601 1.51531 2.41452 2.93606 3.16598 3.59014 3.72615 3.87693 3.90510 3.93693 4.08413 4.15522 4.16089 4.18813 4.35190 4.38755 4.45138 4.57832 4.58671 4.66095 4.69804 4.72650 4.73772 4.77789 4.82127 4.88482 4.91410 4.93261 4.99892 5.03786 5.05026 5.09087 5.14789 5.17683 5.21157 5.24320 5.26593 5.32103 5.32373 5.40446 5.43701 5.44319 5.46887 5.52605 5.56662 5.72196 5.78363 5.85489 5.94032 6.19265 6.29763 6.54416 6.73819 6.94504 7.46229 8.94769 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.004425 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.012156 B = 6325.733956 C = 8106.726259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.165 4.165 5 C 0.072 3.928 6 N -0.535 5.535 7 C 0.178 3.822 8 C -0.514 4.514 9 H 0.048 0.952 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.957 3.043 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.277 1.277 16 C 0.060 3.940 17 C -0.071 4.071 18 C -0.150 4.150 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.029 4.029 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.048 0.952 38 H -0.013 1.013 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.095 0.905 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.042 0.958 50 H 0.071 0.929 51 H 0.058 0.942 52 H 0.048 0.952 53 H 0.073 0.927 54 H 0.038 0.962 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 0.294 6.178 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.221 4.221 5 C -0.056 4.056 6 N -0.257 5.257 7 C 0.053 3.947 8 C -0.552 4.552 9 H 0.066 0.934 10 C -0.193 4.193 11 N -0.574 5.574 12 Si 0.783 3.217 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.203 1.203 16 C -0.066 4.066 17 C -0.072 4.072 18 C -0.167 4.167 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.076 4.076 22 C -0.029 4.029 23 C -0.194 4.194 24 C -0.193 4.193 25 C -0.195 4.195 26 C -0.141 4.141 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.005 0.995 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.090 0.910 51 H 0.077 0.923 52 H 0.067 0.933 53 H 0.092 0.908 54 H 0.058 0.942 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.649 -0.008 6.497 20.695 hybrid contribution 1.664 0.036 -0.688 1.801 sum -17.986 0.028 5.808 18.900 Atomic orbital electron populations 1.22694 0.93101 1.02779 1.02636 1.21125 0.96917 0.96375 0.95412 1.21811 0.99939 0.94663 1.02440 1.22815 0.99499 1.02066 0.97738 1.22272 1.00081 0.86916 0.96371 1.62091 1.01836 1.14911 1.46901 1.20270 0.86832 0.95230 0.92378 1.21593 0.92536 1.47211 0.93900 0.93355 1.25734 1.01740 0.95497 0.96305 1.70065 1.24269 1.51290 1.11785 0.85516 0.79333 0.77685 0.79178 1.19432 1.20632 1.20311 1.21853 0.90322 0.99814 0.94659 1.19907 0.95708 0.93745 0.97807 1.22018 0.96351 1.00649 0.97698 1.21428 0.98214 0.97176 0.97201 1.21381 1.00537 0.92393 1.00817 1.19964 0.95726 0.95906 0.96029 1.19531 0.96373 0.90625 0.96401 1.21912 0.97340 1.02634 0.97549 1.21864 1.01052 0.99752 0.96611 1.21880 0.96158 1.01198 1.00289 1.20894 0.98537 0.95928 0.98722 0.90516 0.91344 0.90771 0.94619 0.91696 0.91248 0.91175 0.92194 0.94536 0.90629 0.93317 0.99463 0.95057 0.92974 0.93706 0.88829 0.83233 0.83913 0.83879 0.91554 0.91285 0.92255 0.93858 0.90986 0.92279 0.93290 0.90839 0.94244 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 6.38 71.98 0.46 -3.26 16 2 C -0.10 -2.99 0.77 -52.18 -0.04 -3.03 16 3 C -0.13 -3.63 8.19 71.98 0.59 -3.04 16 4 C -0.16 -5.95 6.20 71.98 0.45 -5.51 16 5 C 0.07 2.70 4.85 86.30 0.42 3.12 16 6 N -0.53 -23.28 4.46 -905.38 -4.04 -27.32 16 7 C 0.18 9.41 3.40 85.56 0.29 9.70 16 8 C -0.51 -29.99 8.95 25.60 0.23 -29.76 16 9 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 10 C 0.00 0.27 5.46 84.66 0.46 0.73 16 11 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 12 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 C 0.06 2.23 3.71 85.56 0.32 2.55 16 17 C -0.07 -2.34 5.30 -19.86 -0.11 -2.44 16 18 C -0.15 -4.12 7.68 22.27 0.17 -3.95 16 19 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 20 C -0.13 -3.10 8.98 22.27 0.20 -2.90 16 21 C -0.08 -2.01 4.76 -19.87 -0.09 -2.11 16 22 C -0.03 -0.63 0.85 -52.93 -0.05 -0.67 16 23 C -0.14 -2.21 7.13 71.98 0.51 -1.70 16 24 C -0.14 -2.71 8.29 71.98 0.60 -2.11 16 25 C -0.14 -3.21 8.28 71.98 0.60 -2.62 16 26 C -0.12 -3.94 8.34 22.27 0.19 -3.75 16 27 H 0.08 1.57 6.42 -2.39 -0.02 1.56 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.89 3.58 -2.39 -0.01 1.88 16 30 H 0.03 1.14 8.09 -2.38 -0.02 1.12 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.85 2.69 -2.39 -0.01 2.85 16 34 H 0.06 1.84 7.94 -2.39 -0.02 1.82 16 35 H 0.04 1.52 6.75 -2.39 -0.02 1.50 16 36 H 0.08 2.55 6.12 -2.39 -0.01 2.54 16 37 H 0.05 2.09 7.37 -2.38 -0.02 2.07 16 38 H -0.01 -0.74 7.37 -2.39 -0.02 -0.76 16 39 H 0.03 1.71 3.85 -2.39 -0.01 1.70 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.04 1.83 7.23 -2.39 -0.02 1.81 16 42 H 0.09 3.13 2.35 -2.38 -0.01 3.12 16 43 H 0.15 3.70 2.67 -2.91 -0.01 3.69 16 44 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 45 H 0.14 2.54 5.90 -2.91 -0.02 2.53 16 46 H 0.07 0.95 7.51 -2.39 -0.02 0.94 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.95 7.51 -2.39 -0.02 0.93 16 49 H 0.04 0.99 7.41 -2.39 -0.02 0.97 16 50 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 54 H 0.04 1.07 7.37 -2.39 -0.02 1.05 16 55 H 0.10 3.42 7.07 -2.91 -0.02 3.40 16 Total: -1.00 -65.77 390.69 4.55 -61.22 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.87 Total: 27.92 kcal Atomic # 6 Polarization: -58.81 SS G_CDS: 5.41 Total: -53.40 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -3.76 Total: -83.62 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -65.77 4.55 -61.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307485417.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.188 kcal (2) G-P(sol) polarization free energy of solvation -65.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds