Wall clock time and date at job start Tue Mar 31 2020 11:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 C 1.53005 * 109.46690 * 240.00255 * 2 1 3 5 5 C 1.52997 * 109.47202 * 120.00438 * 2 1 3 6 6 N 1.46900 * 109.47530 * 60.98515 * 5 2 1 7 7 C 1.46901 * 111.00426 * 218.54019 * 6 5 2 8 8 C 1.50693 * 109.47223 * 148.61404 * 7 6 5 9 9 C 1.38631 * 119.75265 * 266.89018 * 8 7 6 10 10 C 1.37624 * 120.25028 * 179.72563 * 9 8 7 11 11 C 1.40714 * 119.73902 * 0.56956 * 10 9 8 12 12 C 1.41403 * 120.24144 * 179.68281 * 11 10 9 13 13 H 1.07997 * 120.00163 * 214.58526 * 12 11 10 14 14 C 1.39944 * 119.99827 * 34.58551 * 12 11 10 15 15 N 1.30829 * 120.00082 * 5.30471 * 14 12 11 16 16 Si 1.86796 * 120.00018 * 185.30280 * 14 12 11 17 17 H 1.48506 * 109.46857 * 60.00212 * 16 14 12 18 18 H 1.48502 * 109.47530 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47363 * 300.00450 * 16 14 12 20 20 C 1.40717 * 119.51699 * 359.70495 * 11 10 9 21 21 C 1.37622 * 119.74309 * 0.02562 * 20 11 10 22 22 C 1.46896 * 111.00286 * 94.58344 * 6 5 2 23 23 C 1.53000 * 109.47178 * 82.80556 * 22 6 5 24 24 C 1.53002 * 109.46803 * 86.63411 * 23 22 6 25 25 C 1.52992 * 109.47385 * 206.63467 * 23 22 6 26 26 C 1.52998 * 109.47138 * 326.63914 * 23 22 6 27 27 H 1.09004 * 109.47026 * 299.99443 * 1 2 3 28 28 H 1.08999 * 109.47250 * 60.00154 * 1 2 3 29 29 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46814 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46933 * 300.00040 * 3 2 1 32 32 H 1.09004 * 109.46716 * 60.00367 * 3 2 1 33 33 H 1.09003 * 109.47339 * 307.14705 * 4 2 1 34 34 H 1.08992 * 109.47171 * 67.15586 * 4 2 1 35 35 H 1.09000 * 109.46630 * 187.15157 * 4 2 1 36 36 H 1.08998 * 109.47086 * 300.98435 * 5 2 1 37 37 H 1.08997 * 109.47127 * 180.98398 * 5 2 1 38 38 H 1.09003 * 109.46884 * 268.62267 * 7 6 5 39 39 H 1.09005 * 109.46792 * 28.61384 * 7 6 5 40 40 H 1.08004 * 119.87781 * 359.97438 * 9 8 7 41 41 H 1.07995 * 120.13055 * 180.28167 * 10 9 8 42 42 H 0.96998 * 120.00031 * 180.02562 * 15 14 12 43 43 H 1.07998 * 120.13108 * 179.97438 * 20 11 10 44 44 H 1.07994 * 119.87753 * 180.02562 * 21 20 11 45 45 H 1.08994 * 109.47700 * 202.81216 * 22 6 5 46 46 H 1.09000 * 109.46781 * 322.81133 * 22 6 5 47 47 H 1.09004 * 109.46919 * 49.39358 * 24 23 22 48 48 H 1.09000 * 109.47398 * 169.38725 * 24 23 22 49 49 H 1.08998 * 109.47575 * 289.39292 * 24 23 22 50 50 H 1.09000 * 109.47387 * 60.00194 * 25 23 22 51 51 H 1.09001 * 109.47654 * 180.02562 * 25 23 22 52 52 H 1.09001 * 109.47415 * 300.00241 * 25 23 22 53 53 H 1.08997 * 109.47297 * 50.81110 * 26 23 22 54 54 H 1.09002 * 109.46809 * 170.81034 * 26 23 22 55 55 H 1.09000 * 109.47012 * 290.81117 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 7 1.5699 -2.1130 1.2373 7 6 1.1976 -2.5546 2.5880 8 6 0.0803 -3.5616 2.4971 9 6 -1.2366 -3.1382 2.5889 10 6 -2.2652 -4.0484 2.5016 11 6 -1.9756 -5.4147 2.3305 12 6 -3.0240 -6.3598 2.2463 13 1 -2.8937 -7.3491 2.6594 14 6 -4.2304 -6.0133 1.6275 15 7 -4.3524 -4.8527 1.0359 16 14 -5.6664 -7.2077 1.6460 17 1 -6.0533 -7.4948 3.0507 18 1 -6.8195 -6.6068 0.9286 19 1 -5.2685 -8.4708 0.9741 20 6 -0.6350 -5.8338 2.2444 21 6 0.3773 -4.9053 2.3287 22 6 2.5797 -3.0048 0.6516 23 6 3.6114 -3.3773 1.7183 24 6 3.1189 -4.5968 2.5001 25 6 4.9448 -3.7077 1.0448 26 6 3.8019 -2.2000 2.6767 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.5759 -1.7053 -1.3156 34 1 1.7849 -0.1388 -2.1346 35 1 3.1224 -0.8334 -1.1877 36 1 1.6624 -0.2179 2.1391 37 1 3.1298 -0.7061 1.2580 38 1 2.0608 -3.0120 3.0715 39 1 0.8665 -1.6961 3.1725 40 1 -1.4564 -2.0896 2.7254 41 1 -3.2905 -3.7159 2.5688 42 1 -5.1887 -4.6124 0.6074 43 1 -0.4014 -6.8800 2.1135 44 1 1.4069 -5.2244 2.2624 45 1 2.0957 -3.9091 0.2827 46 1 3.0780 -2.4968 -0.1740 47 1 2.8044 -5.3730 1.8024 48 1 3.9259 -4.9769 3.1266 49 1 2.2758 -4.3095 3.1283 50 1 5.2956 -2.8389 0.4878 51 1 5.6797 -3.9735 1.8046 52 1 4.8090 -4.5464 0.3620 53 1 2.8293 -1.8596 3.0319 54 1 4.4081 -2.5169 3.5253 55 1 4.3040 -1.3849 2.1555 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307649318.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:58 Heat of formation + Delta-G solvation = 57.083120 kcal Electronic energy + Delta-G solvation = -28940.336436 eV Core-core repulsion = 25557.558215 eV Total energy + Delta-G solvation = -3382.778221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.77367 -39.07903 -37.79038 -35.58498 -34.42857 -32.16697 -31.33088 -29.54788 -28.71612 -28.07289 -27.85776 -27.80202 -27.02291 -25.66976 -23.09080 -22.67977 -21.35611 -19.92588 -19.59288 -19.00102 -17.26879 -16.79018 -16.58863 -16.28143 -16.09203 -15.69994 -15.11900 -15.07801 -14.99993 -14.65223 -14.38632 -14.19732 -14.02593 -13.72432 -13.48224 -13.26738 -13.09559 -13.01165 -12.87969 -12.82541 -12.57928 -12.54054 -12.44798 -12.38270 -12.23390 -12.20110 -12.04038 -11.93933 -11.77132 -11.69184 -11.52638 -11.37790 -11.21566 -11.15629 -11.04531 -10.91715 -10.52321 -9.22824 -8.99242 -8.66416 -8.47238 -6.30519 1.05598 1.24537 1.36465 1.48251 1.52524 2.24322 2.80468 3.31186 3.81453 3.88683 3.92599 3.99399 4.09031 4.11920 4.22248 4.35290 4.43510 4.54839 4.58635 4.63665 4.67708 4.72389 4.76328 4.78737 4.82334 4.86075 4.88768 4.93082 4.96793 4.98686 5.05081 5.06812 5.12422 5.14588 5.19470 5.22025 5.24640 5.25468 5.27768 5.35532 5.38945 5.43337 5.48730 5.54018 5.55227 5.58344 5.61670 5.71303 5.84115 6.06479 6.19813 6.32148 6.46630 6.52006 6.56045 6.81532 7.03819 7.14383 8.48399 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003890 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.237858 B = 7195.440527 C = 8412.638671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.133 4.133 5 C 0.056 3.944 6 N -0.532 5.532 7 C 0.075 3.925 8 C -0.162 4.162 9 C -0.101 4.101 10 C -0.174 4.174 11 C 0.073 3.927 12 C -0.514 4.514 13 H 0.068 0.932 14 C 0.030 3.970 15 N -0.848 5.848 16 Si 0.981 3.019 17 H -0.261 1.261 18 H -0.270 1.270 19 H -0.262 1.262 20 C -0.233 4.233 21 C -0.127 4.127 22 C 0.063 3.937 23 C -0.094 4.094 24 C -0.178 4.178 25 C -0.132 4.132 26 C -0.177 4.177 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.281 0.719 43 H 0.090 0.910 44 H 0.157 0.843 45 H 0.047 0.953 46 H 0.085 0.915 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.060 0.940 52 H 0.051 0.949 53 H 0.078 0.922 54 H 0.060 0.940 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.987 9.351 -0.651 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.193 4.193 4 C -0.190 4.190 5 C -0.072 4.072 6 N -0.254 5.254 7 C -0.051 4.051 8 C -0.164 4.164 9 C -0.119 4.119 10 C -0.194 4.194 11 C 0.071 3.929 12 C -0.545 4.545 13 H 0.087 0.913 14 C -0.182 4.182 15 N -0.476 5.476 16 Si 0.803 3.197 17 H -0.185 1.185 18 H -0.195 1.195 19 H -0.186 1.186 20 C -0.253 4.253 21 C -0.144 4.144 22 C -0.065 4.065 23 C -0.096 4.096 24 C -0.233 4.233 25 C -0.190 4.190 26 C -0.233 4.233 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.174 0.826 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.071 0.929 53 H 0.097 0.903 54 H 0.079 0.921 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.397 9.490 -1.079 18.976 hybrid contribution -0.862 -0.738 0.221 1.156 sum 15.535 8.752 -0.859 17.852 Atomic orbital electron populations 1.21678 0.95861 1.00899 1.00048 1.20541 0.94823 0.95251 0.95497 1.21806 1.01242 0.94416 1.01807 1.21856 1.00443 1.00046 0.96661 1.22657 0.99192 0.88078 0.97230 1.61893 1.40228 1.01937 1.21335 1.22020 0.96699 0.96358 0.89998 1.19517 0.93408 0.93882 1.09570 1.20764 0.93423 0.97085 1.00677 1.21197 0.97514 0.94226 1.06455 1.17940 0.92796 0.93121 0.89014 1.19728 0.98953 0.99640 1.36189 0.91337 1.26659 1.01637 0.97353 0.92511 1.69877 1.27276 1.22382 1.28096 0.85274 0.76562 0.78482 0.79422 1.18512 1.19474 1.18633 1.21340 0.93467 0.98334 1.12146 1.22060 1.00353 0.92937 0.99051 1.22513 0.90664 0.96643 0.96687 1.21080 0.96440 0.95654 0.96405 1.23028 1.02050 0.97591 1.00651 1.21805 0.95272 1.01574 1.00343 1.22843 1.03332 0.97825 0.99304 0.93937 0.93650 0.94178 0.91714 0.92504 0.92707 0.93709 0.93148 0.92056 0.92175 0.91196 0.87316 0.92285 0.88820 0.89416 0.90917 0.89210 0.82620 0.93447 0.89698 0.92473 0.91727 0.89853 0.91989 0.92069 0.92943 0.90348 0.92090 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.32 71.98 0.60 -2.98 16 2 C -0.06 -1.35 0.85 -52.18 -0.04 -1.39 16 3 C -0.13 -2.35 8.47 71.98 0.61 -1.74 16 4 C -0.13 -2.94 6.96 71.98 0.50 -2.44 16 5 C 0.06 1.25 2.83 86.30 0.24 1.50 16 6 N -0.53 -14.86 3.40 -900.83 -3.06 -17.92 16 7 C 0.07 2.30 3.30 85.55 0.28 2.58 16 8 C -0.16 -6.70 5.35 -19.68 -0.11 -6.80 16 9 C -0.10 -4.81 9.65 22.22 0.21 -4.60 16 10 C -0.17 -9.69 8.63 22.73 0.20 -9.49 16 11 C 0.07 4.16 5.50 -21.29 -0.12 4.05 16 12 C -0.51 -29.59 9.04 23.46 0.21 -29.38 16 13 H 0.07 3.81 7.85 -2.91 -0.02 3.78 16 14 C 0.03 1.61 5.31 85.26 0.45 2.06 16 15 N -0.85 -48.07 10.98 21.83 0.24 -47.83 16 16 Si 0.98 41.28 29.56 68.60 2.03 43.30 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 20 C -0.23 -11.84 9.80 22.73 0.22 -11.61 16 21 C -0.13 -5.41 8.42 22.22 0.19 -5.22 16 22 C 0.06 1.60 4.05 86.30 0.35 1.95 16 23 C -0.09 -1.94 0.77 -52.18 -0.04 -1.98 16 24 C -0.18 -4.20 6.26 71.98 0.45 -3.75 16 25 C -0.13 -2.24 8.30 71.98 0.60 -1.64 16 26 C -0.18 -3.25 6.45 71.98 0.46 -2.79 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.42 7.63 -2.38 -0.02 1.40 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 1.21 6.90 -2.39 -0.02 1.20 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.14 7.31 -2.39 -0.02 1.12 16 36 H 0.06 1.37 7.08 -2.39 -0.02 1.35 16 37 H 0.07 1.32 4.87 -2.39 -0.01 1.31 16 38 H 0.11 2.94 1.79 -2.39 0.00 2.93 16 39 H 0.06 1.78 7.06 -2.38 -0.02 1.76 16 40 H 0.09 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.09 5.21 6.49 -2.91 -0.02 5.19 16 42 H 0.28 14.60 8.30 -92.71 -0.77 13.83 16 43 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 44 H 0.16 5.53 2.72 -2.91 -0.01 5.52 16 45 H 0.05 1.48 7.48 -2.39 -0.02 1.46 16 46 H 0.08 1.91 5.00 -2.39 -0.01 1.90 16 47 H 0.06 1.49 6.38 -2.38 -0.02 1.47 16 48 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 49 H 0.08 2.30 3.18 -2.39 -0.01 2.29 16 50 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 51 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.08 1.64 3.16 -2.39 -0.01 1.63 16 54 H 0.06 1.02 8.12 -2.39 -0.02 1.01 16 55 H 0.07 1.10 6.38 -2.39 -0.02 1.08 16 Total: -1.00 -62.60 388.67 5.35 -57.25 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: 0.86 Total: 38.89 kcal Atomic # 6 Polarization: -78.98 SS G_CDS: 5.28 Total: -73.70 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -2.82 Total: -65.75 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.60 5.35 -57.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307649318.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.337 kcal (2) G-P(sol) polarization free energy of solvation -62.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds