Wall clock time and date at job start Tue Mar 31 2020 11:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47304 * 2 1 4 4 C 1.53000 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47233 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.46766 * 304.99996 * 5 4 3 7 7 C 1.52992 * 109.47544 * 185.00033 * 5 4 3 8 8 N 1.46907 * 109.47140 * 64.99418 * 5 4 3 9 9 C 1.46900 * 110.99421 * 66.05245 * 8 5 4 10 10 C 1.53003 * 109.46908 * 200.16861 * 9 8 5 11 11 C 1.52995 * 109.47184 * 180.42246 * 10 9 8 12 12 C 1.53003 * 109.47184 * 180.02562 * 11 10 9 13 13 C 1.46900 * 111.00130 * 190.00077 * 8 5 4 14 14 C 1.50704 * 109.46978 * 72.21085 * 13 8 5 15 15 C 1.38632 * 119.75061 * 263.59963 * 14 13 8 16 16 C 1.37624 * 120.24831 * 179.72225 * 15 14 13 17 17 C 1.40711 * 119.74068 * 0.56806 * 16 15 14 18 18 C 1.41403 * 120.23930 * 179.68536 * 17 16 15 19 19 H 1.07999 * 119.99570 * 156.74126 * 18 17 16 20 20 C 1.39938 * 119.99860 * 336.73907 * 18 17 16 21 21 N 1.30831 * 120.00393 * 328.40669 * 20 18 17 22 22 Si 1.86802 * 119.99826 * 148.41324 * 20 18 17 23 23 H 1.48496 * 109.47438 * 94.98548 * 22 20 18 24 24 H 1.48503 * 109.46954 * 214.98688 * 22 20 18 25 25 H 1.48498 * 109.46992 * 334.98113 * 22 20 18 26 26 C 1.40714 * 119.51494 * 359.70435 * 17 16 15 27 27 C 1.37618 * 119.74405 * 359.97438 * 26 17 16 28 28 H 1.08991 * 109.47220 * 59.99766 * 1 2 3 29 29 H 1.08995 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46530 * 299.99949 * 1 2 3 31 31 H 1.08998 * 109.46736 * 239.99766 * 2 1 3 32 32 H 1.09001 * 109.47117 * 120.00283 * 2 1 3 33 33 H 1.08998 * 109.47415 * 60.00182 * 3 2 1 34 34 H 1.09001 * 109.47265 * 300.00193 * 3 2 1 35 35 H 1.08998 * 109.47118 * 59.99767 * 4 3 2 36 36 H 1.09001 * 109.47003 * 299.99506 * 4 3 2 37 37 H 1.08997 * 109.47049 * 59.99617 * 7 5 4 38 38 H 1.09002 * 109.47626 * 180.02562 * 7 5 4 39 39 H 1.09008 * 109.47059 * 299.99784 * 7 5 4 40 40 H 1.08998 * 109.47294 * 320.16370 * 9 8 5 41 41 H 1.08995 * 109.47554 * 80.16973 * 9 8 5 42 42 H 1.09001 * 109.47188 * 300.42293 * 10 9 8 43 43 H 1.09005 * 109.47054 * 60.42313 * 10 9 8 44 44 H 1.09001 * 109.47097 * 300.00103 * 11 10 9 45 45 H 1.09005 * 109.47070 * 60.00077 * 11 10 9 46 46 H 1.09003 * 109.46909 * 299.99588 * 12 11 10 47 47 H 1.08996 * 109.46996 * 60.00121 * 12 11 10 48 48 H 1.08998 * 109.46828 * 180.02562 * 12 11 10 49 49 H 1.08990 * 109.47160 * 192.20983 * 13 8 5 50 50 H 1.09000 * 109.47023 * 312.21379 * 13 8 5 51 51 H 1.08002 * 119.87482 * 359.97438 * 15 14 13 52 52 H 1.07998 * 120.12575 * 180.27870 * 16 15 14 53 53 H 0.96999 * 120.00062 * 179.97438 * 21 20 18 54 54 H 1.08004 * 120.12668 * 179.97438 * 26 17 16 55 55 H 1.07998 * 119.87795 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 -0.0013 6 1 3.6452 3.4236 -0.8432 7 6 5.6049 2.8866 -0.1277 8 7 3.6921 3.5420 1.2539 9 6 4.3753 2.9303 2.4015 10 6 3.6118 3.2616 3.6854 11 6 4.3291 2.6333 4.8818 12 6 3.5653 2.9640 6.1656 13 6 3.9532 4.9864 1.1945 14 6 2.9513 5.6408 0.2784 15 6 3.2868 5.8876 -1.0438 16 6 2.3778 6.4795 -1.8908 17 6 1.1081 6.8451 -1.4069 18 6 0.1684 7.4599 -2.2662 19 1 -0.8865 7.4031 -2.0417 20 6 0.6053 8.1417 -3.4075 21 7 1.7641 8.7490 -3.4032 22 14 -0.4662 8.1850 -4.9370 23 1 -1.2781 9.4284 -4.9377 24 1 0.3956 8.1559 -6.1461 25 1 -1.3677 7.0051 -4.9434 26 6 0.7806 6.5949 -0.0615 27 6 1.7030 5.9959 0.7657 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9330 0.9286 -0.8908 36 1 3.9338 0.9284 0.8892 37 1 5.8929 2.3989 -1.0590 38 1 5.9684 3.9142 -0.1277 39 1 6.0399 2.3478 0.7142 40 1 4.4111 1.8490 2.2689 41 1 5.3901 3.3217 2.4711 42 1 3.5694 4.3431 3.8141 43 1 2.5992 2.8636 3.6189 44 1 4.3715 1.5518 4.7531 45 1 5.3418 3.0313 4.9483 46 1 3.5226 4.0456 6.2946 47 1 2.5529 2.5657 6.0989 48 1 4.0767 2.5168 7.0180 49 1 3.8648 5.4130 2.1936 50 1 4.9600 5.1582 0.8138 51 1 4.2638 5.6107 -1.4117 52 1 2.6396 6.6667 -2.9217 53 1 2.0671 9.2214 -4.1944 54 1 -0.1909 6.8719 0.3205 55 1 1.4538 5.8025 1.7986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473495481.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:48 Heat of formation + Delta-G solvation = -32.321418 kcal Electronic energy + Delta-G solvation = -27645.750481 eV Core-core repulsion = 24259.095388 eV Total energy + Delta-G solvation = -3386.655093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.37096 -38.90205 -36.49194 -35.83200 -35.22722 -32.99907 -31.84810 -31.09297 -29.90329 -29.23805 -27.61067 -25.47808 -24.76249 -23.64134 -22.87725 -21.95247 -21.77760 -21.67358 -19.92569 -19.19775 -17.36219 -17.03126 -16.43910 -16.25914 -15.99786 -15.83291 -15.64342 -15.24362 -14.96996 -14.56633 -14.43874 -14.22901 -14.07939 -13.77847 -13.66657 -13.56462 -13.42436 -13.29438 -13.18307 -13.04945 -12.81416 -12.69667 -12.59216 -12.35754 -12.14350 -12.06746 -11.96807 -11.88642 -11.85262 -11.62761 -11.50137 -11.37561 -11.26407 -11.19219 -11.17167 -11.05131 -10.84903 -9.32455 -9.22667 -8.93196 -8.73697 -6.25773 0.99433 1.18996 1.35636 1.45533 1.55336 2.19205 2.62759 3.18644 3.78663 3.83059 4.07443 4.12806 4.16443 4.24700 4.27018 4.34393 4.41102 4.41725 4.46392 4.49458 4.54323 4.60913 4.64615 4.68457 4.77055 4.78055 4.86337 4.89262 4.95037 5.01683 5.03909 5.05067 5.06317 5.07852 5.13657 5.17392 5.21103 5.21887 5.30245 5.31654 5.35138 5.36226 5.44678 5.48182 5.51769 5.56695 5.58462 5.70284 5.74253 6.02085 6.11395 6.24640 6.40791 6.43555 6.51054 6.72212 6.95827 7.08780 8.25421 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.003496 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.442078 B = 8008.164214 C = 8866.755116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.098 4.098 5 C 0.077 3.923 6 H 0.058 0.942 7 C -0.177 4.177 8 N -0.527 5.527 9 C 0.054 3.946 10 C -0.110 4.110 11 C -0.117 4.117 12 C -0.151 4.151 13 C 0.124 3.876 14 C -0.190 4.190 15 C -0.087 4.087 16 C -0.201 4.201 17 C 0.088 3.912 18 C -0.516 4.516 19 H 0.072 0.928 20 C 0.052 3.948 21 N -0.809 5.809 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.261 1.261 26 C -0.250 4.250 27 C -0.064 4.064 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.031 0.969 51 H 0.096 0.904 52 H 0.082 0.918 53 H 0.290 0.710 54 H 0.088 0.912 55 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.304 -15.058 9.635 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.032 4.032 6 H 0.076 0.924 7 C -0.236 4.236 8 N -0.250 5.250 9 C -0.073 4.073 10 C -0.148 4.148 11 C -0.155 4.155 12 C -0.209 4.209 13 C -0.003 4.003 14 C -0.192 4.192 15 C -0.106 4.106 16 C -0.221 4.221 17 C 0.086 3.914 18 C -0.545 4.545 19 H 0.090 0.910 20 C -0.167 4.167 21 N -0.433 5.433 22 Si 0.787 3.213 23 H -0.184 1.184 24 H -0.188 1.188 25 H -0.184 1.184 26 C -0.269 4.269 27 C -0.083 4.083 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.049 0.951 51 H 0.114 0.886 52 H 0.100 0.900 53 H 0.101 0.899 54 H 0.107 0.893 55 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.973 -14.964 9.592 18.751 hybrid contribution 0.223 0.904 -1.131 1.465 sum 6.196 -14.059 8.461 17.539 Atomic orbital electron populations 1.21771 0.96295 1.01706 1.01239 1.21502 0.95620 0.96291 1.02051 1.21399 0.95588 0.96359 1.01045 1.21587 0.95482 0.94445 1.02078 1.21697 0.93423 0.95594 0.92451 0.92417 1.22387 0.97019 1.01427 1.02757 1.62177 1.58094 1.02064 1.02662 1.22196 0.95120 0.99834 0.90141 1.21550 0.99509 1.00251 0.93479 1.21451 0.99160 1.00921 0.93989 1.21758 1.00391 1.01333 0.97400 1.20658 0.94354 0.87605 0.97673 1.19197 0.96478 1.09133 0.94377 1.20632 0.97281 0.98713 0.93932 1.20937 0.96208 1.06552 0.98366 1.17820 0.92519 0.89432 0.91606 1.19707 0.94653 1.32180 1.07931 0.91019 1.26667 0.96395 0.91252 1.02340 1.69947 1.21687 1.20970 1.30693 0.85451 0.79160 0.79854 0.76847 1.18394 1.18827 1.18449 1.21087 1.00138 1.11559 0.94165 1.20542 0.93214 0.96634 0.97878 0.93971 0.91645 0.93282 0.91984 0.91250 0.92368 0.95077 0.91469 0.90724 0.91713 0.93729 0.91265 0.89886 0.94858 0.93269 0.92400 0.91380 0.91965 0.93288 0.92949 0.91879 0.91039 0.95131 0.88559 0.89991 0.89924 0.89328 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.12 -2.50 5.93 30.59 0.18 -2.32 16 3 C -0.11 -2.84 5.10 30.59 0.16 -2.69 16 4 C -0.10 -2.31 4.63 30.59 0.14 -2.17 16 5 C 0.08 2.14 2.20 44.91 0.10 2.24 16 6 H 0.06 2.04 6.20 -2.38 -0.01 2.03 16 7 C -0.18 -4.18 8.55 71.98 0.62 -3.57 16 8 N -0.53 -15.02 3.78 -875.52 -3.31 -18.33 16 9 C 0.05 1.21 3.56 86.30 0.31 1.52 16 10 C -0.11 -2.36 5.34 30.59 0.16 -2.20 16 11 C -0.12 -1.95 5.93 30.59 0.18 -1.77 16 12 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 13 C 0.12 4.11 4.82 85.56 0.41 4.52 16 14 C -0.19 -8.04 4.94 -19.67 -0.10 -8.14 16 15 C -0.09 -4.04 8.28 22.22 0.18 -3.85 16 16 C -0.20 -10.81 8.79 22.73 0.20 -10.61 16 17 C 0.09 4.95 5.56 -21.29 -0.12 4.83 16 18 C -0.52 -29.01 8.96 23.46 0.21 -28.80 16 19 H 0.07 3.95 8.01 -2.91 -0.02 3.93 16 20 C 0.05 2.68 4.79 85.25 0.41 3.08 16 21 N -0.81 -43.30 11.82 21.83 0.26 -43.04 16 22 Si 0.97 39.06 29.66 68.60 2.03 41.10 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 C -0.25 -12.84 9.80 22.73 0.22 -12.62 16 27 C -0.06 -2.89 9.69 22.22 0.22 -2.67 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.76 7.75 -2.39 -0.02 1.74 16 34 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.51 6.08 -2.39 -0.01 1.50 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.16 6.49 -2.39 -0.02 1.14 16 39 H 0.07 1.39 6.77 -2.38 -0.02 1.38 16 40 H 0.08 1.66 5.78 -2.39 -0.01 1.64 16 41 H 0.03 0.72 7.34 -2.39 -0.02 0.71 16 42 H 0.05 1.18 6.77 -2.39 -0.02 1.16 16 43 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 2.26 6.53 -2.39 -0.02 2.24 16 50 H 0.03 1.00 6.13 -2.39 -0.01 0.98 16 51 H 0.10 4.08 8.05 -2.91 -0.02 4.06 16 52 H 0.08 4.61 6.60 -2.91 -0.02 4.59 16 53 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 54 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 55 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -58.79 420.16 4.70 -54.09 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.81 Total: 35.70 kcal Atomic # 6 Polarization: -74.42 SS G_CDS: 4.91 Total: -69.51 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -3.05 Total: -61.37 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.10 kcal Total: -58.79 4.70 -54.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473495481.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.769 kcal (2) G-P(sol) polarization free energy of solvation -58.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds