Wall clock time and date at job start Tue Mar 31 2020 11:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47399 * 2 1 4 4 C 1.52995 * 109.47035 * 304.23890 * 3 2 1 5 5 C 1.53005 * 109.46780 * 293.94686 * 4 3 2 6 6 C 1.52997 * 109.46907 * 64.23621 * 3 2 1 7 7 N 1.46907 * 109.47435 * 64.04601 * 6 3 2 8 8 C 1.46901 * 111.00249 * 199.80837 * 7 6 3 9 9 C 1.50699 * 109.47075 * 71.54773 * 8 7 6 10 10 H 1.08000 * 120.00213 * 3.38366 * 9 8 7 11 11 C 1.37879 * 119.99558 * 183.38216 * 9 8 7 12 12 N 1.31507 * 120.00201 * 5.23196 * 11 9 8 13 13 Si 1.86802 * 119.99804 * 185.23630 * 11 9 8 14 14 H 1.48508 * 109.47219 * 5.00440 * 13 11 9 15 15 H 1.48501 * 109.47455 * 125.00379 * 13 11 9 16 16 H 1.48502 * 109.47214 * 245.00650 * 13 11 9 17 17 C 1.46896 * 110.99876 * 75.84893 * 7 6 3 18 18 C 1.53000 * 109.47353 * 200.47654 * 17 7 6 19 19 H 1.08996 * 109.46978 * 305.85278 * 18 17 7 20 20 C 1.52999 * 109.47448 * 185.84544 * 18 17 7 21 21 C 1.50701 * 109.46743 * 65.84709 * 18 17 7 22 22 C 1.38232 * 119.99802 * 59.72975 * 21 18 17 23 23 C 1.38242 * 119.99880 * 179.76421 * 22 21 18 24 24 C 1.38234 * 120.00018 * 0.50912 * 23 22 21 25 25 C 1.50697 * 120.00430 * 179.72457 * 24 23 22 26 26 C 1.38246 * 119.99670 * 359.74206 * 24 23 22 27 27 C 1.38228 * 119.99867 * 0.02562 * 26 24 23 28 28 H 1.08993 * 109.47149 * 60.87459 * 1 2 3 29 29 H 1.09001 * 109.47111 * 180.88149 * 1 2 3 30 30 H 1.09006 * 109.46604 * 300.87942 * 1 2 3 31 31 H 1.09003 * 109.47013 * 239.99918 * 2 1 3 32 32 H 1.09002 * 109.47142 * 120.00191 * 2 1 3 33 33 H 1.08997 * 109.47237 * 184.23282 * 3 2 1 34 34 H 1.08992 * 109.47344 * 53.95078 * 4 3 2 35 35 H 1.08996 * 109.47010 * 173.95236 * 4 3 2 36 36 H 1.08995 * 109.47242 * 305.94806 * 5 4 3 37 37 H 1.09001 * 109.46719 * 65.95386 * 5 4 3 38 38 H 1.08999 * 109.46791 * 185.94931 * 5 4 3 39 39 H 1.09000 * 109.47180 * 304.04940 * 6 3 2 40 40 H 1.08995 * 109.47247 * 184.04337 * 6 3 2 41 41 H 1.08996 * 109.46835 * 191.55219 * 8 7 6 42 42 H 1.09003 * 109.46859 * 311.54874 * 8 7 6 43 43 H 0.97010 * 120.00131 * 180.02562 * 12 11 9 44 44 H 1.09001 * 109.46799 * 80.48095 * 17 7 6 45 45 H 1.08994 * 109.47478 * 320.48199 * 17 7 6 46 46 H 1.08995 * 109.47095 * 185.15930 * 20 18 17 47 47 H 1.08998 * 109.47424 * 305.16859 * 20 18 17 48 48 H 1.09010 * 109.46717 * 65.16851 * 20 18 17 49 49 H 1.08001 * 120.00143 * 359.97438 * 22 21 18 50 50 H 1.08005 * 120.00078 * 180.23201 * 23 22 21 51 51 H 1.08998 * 109.47022 * 270.02006 * 25 24 23 52 52 H 1.09005 * 109.46904 * 30.01867 * 25 24 23 53 53 H 1.08998 * 109.47245 * 150.01766 * 25 24 23 54 54 H 1.08001 * 119.99630 * 179.97438 * 26 24 23 55 55 H 1.07999 * 119.99824 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4449 2.1938 -1.1925 5 6 1.9865 1.5971 -2.4931 6 6 1.6189 2.1323 1.2991 7 7 2.2682 1.4697 2.4382 8 6 1.5614 1.7648 3.6917 9 6 0.2432 1.0347 3.7091 10 1 -0.0171 0.3708 2.8980 11 6 -0.6304 1.2143 4.7605 12 7 -0.3610 2.0988 5.6957 13 14 -2.1969 0.2011 4.8568 14 1 -2.2074 -0.7996 3.7595 15 1 -2.2542 -0.4987 6.1653 16 1 -3.3743 1.0959 4.7219 17 6 3.6844 1.8488 2.5304 18 6 4.4392 0.8046 3.3555 19 1 3.9472 0.6786 4.3199 20 6 5.8795 1.2718 3.5749 21 6 4.4442 -0.5100 2.6187 22 6 5.0133 -0.5956 1.3619 23 6 5.0222 -1.8026 0.6880 24 6 4.4527 -2.9215 1.2665 25 6 4.4569 -4.2359 0.5294 26 6 3.8790 -2.8346 2.5213 27 6 3.8744 -1.6287 3.1971 28 1 -0.3633 0.5002 -0.8977 29 1 -0.3633 -1.0275 0.0158 30 1 -0.3633 0.5275 0.8821 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.1274 1.4434 -0.0758 34 1 0.3590 2.1016 -1.1749 35 1 1.7211 3.2466 -1.1331 36 1 3.0761 1.5932 -2.4650 37 1 1.6222 0.5757 -2.6035 38 1 1.6470 2.1972 -3.3372 39 1 0.5365 2.0681 1.4102 40 1 1.9196 3.1795 1.2684 41 1 2.1684 1.4391 4.5364 42 1 1.3835 2.8378 3.7645 43 1 -0.9755 2.2249 6.4356 44 1 3.7691 2.8229 3.0121 45 1 4.1128 1.8999 1.5295 46 1 6.4422 0.4885 4.0828 47 1 6.3428 1.4857 2.6117 48 1 5.8797 2.1740 4.1866 49 1 5.4539 0.2796 0.9078 50 1 5.4701 -1.8705 -0.2925 51 1 3.5551 -4.3148 -0.0776 52 1 5.3345 -4.2881 -0.1151 53 1 4.4843 -5.0552 1.2477 54 1 3.4338 -3.7086 2.9732 55 1 3.4259 -1.5607 4.1772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474339125.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:38 Heat of formation + Delta-G solvation = -20.528244 kcal Electronic energy + Delta-G solvation = -29012.004324 eV Core-core repulsion = 25625.860622 eV Total energy + Delta-G solvation = -3386.143702 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.60640 -39.29955 -37.24629 -35.52399 -34.27653 -32.16985 -31.81546 -31.55894 -29.86524 -28.54114 -27.36401 -26.13667 -24.91562 -24.24880 -23.58010 -22.86786 -21.90679 -20.51669 -19.61350 -18.52830 -17.29675 -16.67369 -16.50732 -16.22500 -16.05572 -15.83159 -15.59980 -15.30354 -14.90314 -14.48375 -14.35066 -14.20275 -14.04114 -13.89449 -13.73690 -13.55823 -13.50653 -13.26640 -12.98866 -12.88497 -12.81472 -12.70972 -12.65195 -12.55046 -12.49318 -12.16598 -12.06684 -11.95325 -11.86700 -11.66907 -11.43964 -11.35874 -11.21832 -11.11921 -10.96311 -10.87634 -10.54915 -9.59023 -9.11263 -8.80920 -8.15729 -6.22008 0.69354 0.73355 1.36183 1.38188 1.50692 2.40473 3.06950 3.16455 3.32935 3.85843 3.97655 4.07030 4.14522 4.22666 4.24254 4.28726 4.33163 4.48329 4.53164 4.55396 4.62757 4.64517 4.69015 4.72986 4.75078 4.79493 4.86935 4.90733 4.93334 4.96968 4.97719 5.02808 5.07545 5.11054 5.12947 5.17603 5.20363 5.27301 5.29397 5.31843 5.35493 5.42711 5.43112 5.48401 5.51331 5.55863 5.69335 5.75908 5.79791 5.85246 5.89302 6.02894 6.18557 6.36415 6.50113 6.78376 6.96727 7.46421 8.94848 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.005503 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.023660 B = 5087.273264 C = 5812.925592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.064 4.064 4 C -0.122 4.122 5 C -0.141 4.141 6 C 0.067 3.933 7 N -0.520 5.520 8 C 0.213 3.787 9 C -0.499 4.499 10 H 0.064 0.936 11 C 0.003 3.997 12 N -0.937 5.937 13 Si 0.952 3.048 14 H -0.264 1.264 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.066 3.934 18 C -0.049 4.049 19 H 0.045 0.955 20 C -0.132 4.132 21 C -0.049 4.049 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.103 4.103 25 C -0.107 4.107 26 C -0.130 4.130 27 C -0.124 4.124 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.009 0.991 41 H 0.000 1.000 42 H -0.046 1.046 43 H 0.260 0.740 44 H 0.012 0.988 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.128 0.872 50 H 0.139 0.861 51 H 0.070 0.930 52 H 0.078 0.922 53 H 0.067 0.933 54 H 0.119 0.881 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.752 -6.552 -14.727 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.128 4.128 3 C -0.082 4.082 4 C -0.160 4.160 5 C -0.199 4.199 6 C -0.061 4.061 7 N -0.243 5.243 8 C 0.086 3.914 9 C -0.538 4.538 10 H 0.083 0.917 11 C -0.194 4.194 12 N -0.578 5.578 13 Si 0.778 3.222 14 H -0.189 1.189 15 H -0.208 1.208 16 H -0.206 1.206 17 C -0.062 4.062 18 C -0.068 4.068 19 H 0.064 0.936 20 C -0.190 4.190 21 C -0.049 4.049 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.103 4.103 25 C -0.164 4.164 26 C -0.148 4.148 27 C -0.142 4.142 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.018 0.982 42 H -0.029 1.029 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.146 0.854 50 H 0.157 0.843 51 H 0.088 0.912 52 H 0.097 0.903 53 H 0.086 0.914 54 H 0.137 0.863 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.658 -6.995 -14.648 19.986 hybrid contribution -1.331 0.888 1.420 2.139 sum 10.328 -6.107 -13.229 17.859 Atomic orbital electron populations 1.21862 0.97277 1.00538 1.01201 1.21180 0.94810 0.95992 1.00849 1.21036 0.99553 0.95239 0.92413 1.21610 1.00680 0.99046 0.94671 1.21706 1.01078 1.00950 0.96116 1.22092 0.99157 0.93636 0.91232 1.61964 1.00918 1.57830 1.03566 1.19340 0.92927 0.91865 0.87246 1.21479 1.01654 1.24950 1.05719 0.91748 1.25764 1.01463 0.96400 0.95799 1.70099 1.38785 1.35533 1.13413 0.85582 0.79603 0.79022 0.77975 1.18857 1.20803 1.20635 1.22179 0.89635 0.94653 0.99735 1.20132 0.96501 0.92715 0.97422 0.93635 1.21741 0.93822 1.00933 1.02501 1.19534 0.96669 0.93566 0.95090 1.20951 0.99999 0.98107 0.93852 1.21150 1.00343 0.92065 1.00183 1.20080 0.98666 0.97004 0.94585 1.20761 1.02896 0.92821 0.99887 1.21074 1.00701 0.97336 0.95713 1.21006 0.99560 0.93725 0.99904 0.91752 0.93929 0.94384 0.91934 0.93152 0.91416 0.92189 0.92567 0.92403 0.92570 0.92133 0.92446 0.97252 0.98152 1.02855 0.93093 0.96936 0.89764 0.92158 0.90852 0.92646 0.85410 0.84305 0.91160 0.90277 0.91430 0.86270 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 9.19 71.98 0.66 -4.28 16 2 C -0.09 -2.82 5.32 30.59 0.16 -2.66 16 3 C -0.06 -1.89 2.19 -10.80 -0.02 -1.91 16 4 C -0.12 -3.04 5.11 30.59 0.16 -2.88 16 5 C -0.14 -2.76 9.54 71.98 0.69 -2.08 16 6 C 0.07 2.57 4.03 86.30 0.35 2.92 16 7 N -0.52 -21.72 3.39 -900.81 -3.05 -24.77 16 8 C 0.21 11.31 4.55 85.56 0.39 11.70 16 9 C -0.50 -28.24 8.29 25.60 0.21 -28.03 16 10 H 0.06 3.62 6.45 -2.91 -0.02 3.60 16 11 C 0.00 0.17 5.45 84.66 0.46 0.63 16 12 N -0.94 -57.30 13.29 21.45 0.29 -57.02 16 13 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 14 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 C 0.07 2.33 4.08 86.30 0.35 2.68 16 18 C -0.05 -1.61 2.62 -11.54 -0.03 -1.64 16 19 H 0.05 1.84 6.41 -2.39 -0.02 1.82 16 20 C -0.13 -3.39 8.93 71.98 0.64 -2.75 16 21 C -0.05 -1.53 4.53 -19.87 -0.09 -1.62 16 22 C -0.11 -2.90 8.70 22.27 0.19 -2.71 16 23 C -0.12 -2.81 9.70 22.27 0.22 -2.59 16 24 C -0.10 -2.56 5.88 -19.86 -0.12 -2.68 16 25 C -0.11 -1.93 10.01 71.23 0.71 -1.21 16 26 C -0.13 -3.84 9.70 22.27 0.22 -3.62 16 27 C -0.12 -4.24 9.67 22.27 0.22 -4.02 16 28 H 0.06 1.79 6.27 -2.39 -0.01 1.78 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.50 5.10 -2.38 -0.01 1.48 16 31 H 0.06 1.67 6.94 -2.39 -0.02 1.66 16 32 H 0.05 1.90 7.61 -2.39 -0.02 1.88 16 33 H 0.07 1.90 6.68 -2.39 -0.02 1.89 16 34 H 0.06 1.57 6.04 -2.39 -0.01 1.56 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.09 6.99 -2.39 -0.02 1.08 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 2.53 5.26 -2.39 -0.01 2.52 16 40 H 0.01 0.36 8.00 -2.39 -0.02 0.34 16 41 H 0.00 0.03 6.53 -2.39 -0.02 0.01 16 42 H -0.05 -2.75 8.06 -2.39 -0.02 -2.77 16 43 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 44 H 0.01 0.47 7.99 -2.39 -0.02 0.45 16 45 H 0.08 2.54 5.50 -2.39 -0.01 2.53 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.57 7.59 -2.39 -0.02 1.55 16 48 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 49 H 0.13 2.85 7.13 -2.91 -0.02 2.83 16 50 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 51 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.08 1.13 8.09 -2.38 -0.02 1.11 16 53 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 54 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 55 H 0.09 3.54 7.95 -2.91 -0.02 3.52 16 Total: -1.00 -64.33 415.15 5.45 -58.87 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.83 Total: 22.19 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 5.37 Total: -46.75 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.77 Total: -81.78 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -64.33 5.45 -58.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474339125.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.343 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds