Wall clock time and date at job start Tue Mar 31 2020 11:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47192 * 2 1 4 4 C 1.52998 * 109.47207 * 156.38575 * 3 2 1 5 5 C 1.53000 * 109.47006 * 184.99551 * 4 3 2 6 6 C 1.53003 * 109.46818 * 276.38245 * 3 2 1 7 7 N 1.46900 * 109.46873 * 59.06260 * 6 3 2 8 8 C 1.46898 * 110.99806 * 86.80121 * 7 6 3 9 9 C 1.50706 * 109.46957 * 290.22141 * 8 7 6 10 10 H 1.07995 * 120.00041 * 359.35163 * 9 8 7 11 11 C 1.37882 * 120.00136 * 179.34924 * 9 8 7 12 12 N 1.31513 * 120.00206 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99742 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47082 * 89.99696 * 13 11 9 15 15 H 1.48499 * 109.46790 * 209.99869 * 13 11 9 16 16 H 1.48500 * 109.46959 * 329.99364 * 13 11 9 17 17 C 1.46900 * 111.00040 * 210.75160 * 7 6 3 18 18 C 1.52998 * 109.47136 * 71.88656 * 17 7 6 19 19 H 1.09007 * 109.46578 * 307.26548 * 18 17 7 20 20 C 1.52992 * 109.47274 * 67.26941 * 18 17 7 21 21 C 1.50703 * 109.47021 * 187.27036 * 18 17 7 22 22 C 1.38233 * 120.00125 * 304.46740 * 21 18 17 23 23 C 1.38237 * 120.00109 * 179.79142 * 22 21 18 24 24 C 1.38227 * 120.00071 * 0.43659 * 23 22 21 25 25 C 1.50695 * 120.00310 * 179.83561 * 24 23 22 26 26 C 1.38240 * 119.99970 * 359.81418 * 24 23 22 27 27 C 1.38233 * 119.99880 * 124.74038 * 21 18 17 28 28 H 1.09010 * 109.47142 * 292.44718 * 1 2 3 29 29 H 1.08994 * 109.47381 * 52.44503 * 1 2 3 30 30 H 1.09002 * 109.47037 * 172.45356 * 1 2 3 31 31 H 1.08995 * 109.47534 * 239.99448 * 2 1 3 32 32 H 1.09010 * 109.47358 * 119.99414 * 2 1 3 33 33 H 1.08997 * 109.47302 * 36.38089 * 3 2 1 34 34 H 1.08993 * 109.47300 * 304.99912 * 4 3 2 35 35 H 1.09010 * 109.47244 * 64.99589 * 4 3 2 36 36 H 1.09006 * 109.47093 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47208 * 299.99623 * 5 4 3 38 38 H 1.08996 * 109.47279 * 59.99951 * 5 4 3 39 39 H 1.09000 * 109.47075 * 299.06818 * 6 3 2 40 40 H 1.08999 * 109.47202 * 179.06692 * 6 3 2 41 41 H 1.08998 * 109.47495 * 50.22219 * 8 7 6 42 42 H 1.09000 * 109.47231 * 170.22347 * 8 7 6 43 43 H 0.96996 * 120.00022 * 179.97438 * 12 11 9 44 44 H 1.09005 * 109.47224 * 191.88870 * 17 7 6 45 45 H 1.08995 * 109.47072 * 311.88303 * 17 7 6 46 46 H 1.09009 * 109.46949 * 181.47398 * 20 18 17 47 47 H 1.09000 * 109.47304 * 301.47157 * 20 18 17 48 48 H 1.08994 * 109.47659 * 61.47458 * 20 18 17 49 49 H 1.08011 * 119.99637 * 359.97438 * 22 21 18 50 50 H 1.07998 * 119.99466 * 180.27701 * 23 22 21 51 51 H 1.08996 * 109.47540 * 269.98306 * 25 24 23 52 52 H 1.09007 * 109.47067 * 29.98068 * 25 24 23 53 53 H 1.09000 * 109.47173 * 149.97392 * 25 24 23 54 54 H 1.07995 * 120.00237 * 179.97438 * 26 24 23 55 55 H 1.07998 * 120.00275 * 359.97438 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.4561 1.4828 0.5778 5 6 3.9185 2.9366 0.6936 6 6 2.0588 1.9767 -1.4336 7 7 0.7031 1.9171 -1.9961 8 6 -0.0581 3.1290 -1.6648 9 6 -0.3687 3.1396 -0.1901 10 1 -0.0432 2.3222 0.4362 11 6 -1.0684 4.1928 0.3596 12 7 -1.3399 4.2018 1.6464 13 14 -1.6321 5.6064 -0.7238 14 1 -2.9853 5.3107 -1.2591 15 1 -1.6788 6.8559 0.0773 16 1 -0.6801 5.7763 -1.8508 17 6 0.7448 1.7025 -3.4488 18 6 1.1843 0.2661 -3.7397 19 1 2.1144 0.0567 -3.2111 20 6 0.0999 -0.7045 -3.2679 21 6 1.3997 0.0971 -5.2216 22 6 0.3822 0.4000 -6.1069 23 6 0.5812 0.2491 -7.4665 24 6 1.7946 -0.2134 -7.9403 25 6 2.0104 -0.3815 -9.4222 26 6 2.8105 -0.5213 -7.0547 27 6 2.6129 -0.3663 -5.6953 28 1 -0.3634 0.3924 0.9499 29 1 -0.3634 0.6263 -0.8146 30 1 -0.3633 -1.0188 -0.1350 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.3811 2.0609 0.6095 34 1 3.4590 1.0208 1.5650 35 1 4.1328 0.9376 -0.0804 36 1 4.9272 2.9654 1.1057 37 1 3.9157 3.3985 -0.2937 38 1 3.2419 3.4818 1.3517 39 1 2.7305 1.3684 -2.0393 40 1 2.4064 3.0098 -1.4319 41 1 0.5322 4.0095 -1.9180 42 1 -0.9888 3.1400 -2.2321 43 1 -1.8318 4.9430 2.0331 44 1 -0.2464 1.8715 -3.8697 45 1 1.4538 2.3975 -3.8985 46 1 0.4244 -1.7289 -3.4513 47 1 -0.0744 -0.5641 -2.2012 48 1 -0.8229 -0.5123 -3.8152 49 1 -0.5673 0.7575 -5.7365 50 1 -0.2123 0.4901 -8.1584 51 1 1.7177 -1.3882 -9.7202 52 1 1.4061 0.3474 -9.9624 53 1 3.0634 -0.2250 -9.6562 54 1 3.7583 -0.8830 -7.4248 55 1 3.4065 -0.6068 -5.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474339126.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:43 Heat of formation + Delta-G solvation = -2.681358 kcal Electronic energy + Delta-G solvation = -28353.266520 eV Core-core repulsion = 24967.896717 eV Total energy + Delta-G solvation = -3385.369803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.71324 -39.59876 -36.78831 -35.42320 -34.25987 -32.76218 -32.10632 -31.71594 -29.88378 -28.40624 -27.48854 -26.31289 -25.09729 -23.71793 -22.96596 -22.58788 -21.89479 -21.00880 -20.53551 -18.45948 -17.40647 -16.72193 -16.53047 -16.32688 -15.82790 -15.63001 -15.51555 -14.94672 -14.86396 -14.68258 -14.57179 -14.38171 -14.20013 -14.00977 -13.89875 -13.67694 -13.30988 -13.18675 -13.06420 -12.98970 -12.89285 -12.67362 -12.43396 -12.39698 -12.14461 -12.13019 -12.05548 -11.97694 -11.87108 -11.68501 -11.61264 -11.28628 -11.17039 -11.04081 -10.96093 -10.68577 -10.32560 -9.76418 -9.30003 -8.74805 -8.12072 -6.11596 0.49177 0.56121 1.33509 1.36965 1.43811 2.41160 2.88502 3.17903 3.24923 3.84519 3.98133 4.09629 4.15095 4.16512 4.17874 4.21938 4.34914 4.45397 4.51635 4.53473 4.60437 4.64578 4.68673 4.75068 4.82723 4.83415 4.86305 4.88636 4.90741 4.92552 4.98188 5.03407 5.06503 5.09961 5.14722 5.18436 5.23106 5.27129 5.34542 5.36594 5.38741 5.39707 5.40972 5.50858 5.60045 5.62992 5.68177 5.72809 5.75954 5.86029 5.93637 6.19477 6.20099 6.27920 6.51956 6.78480 7.06472 7.50432 9.00401 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.003908 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.618301 B = 7162.623542 C = 8241.463040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.110 4.110 5 C -0.148 4.148 6 C 0.081 3.919 7 N -0.517 5.517 8 C 0.167 3.833 9 C -0.506 4.506 10 H 0.101 0.899 11 C 0.014 3.986 12 N -0.945 5.945 13 Si 0.919 3.081 14 H -0.273 1.273 15 H -0.291 1.291 16 H -0.261 1.261 17 C 0.063 3.937 18 C -0.033 4.033 19 H 0.079 0.921 20 C -0.143 4.143 21 C -0.085 4.085 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.104 4.104 25 C -0.111 4.111 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.011 0.989 29 H 0.100 0.900 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.016 0.984 41 H -0.024 1.024 42 H 0.018 0.982 43 H 0.260 0.740 44 H 0.063 0.937 45 H 0.020 0.980 46 H 0.052 0.948 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.118 0.882 50 H 0.132 0.868 51 H 0.077 0.923 52 H 0.070 0.930 53 H 0.074 0.926 54 H 0.139 0.861 55 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.843 -10.686 -17.517 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.148 4.148 5 C -0.205 4.205 6 C -0.047 4.047 7 N -0.239 5.239 8 C 0.040 3.960 9 C -0.544 4.544 10 H 0.118 0.882 11 C -0.182 4.182 12 N -0.588 5.588 13 Si 0.746 3.254 14 H -0.198 1.198 15 H -0.218 1.218 16 H -0.185 1.185 17 C -0.065 4.065 18 C -0.052 4.052 19 H 0.097 0.903 20 C -0.200 4.200 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.104 4.104 25 C -0.167 4.167 26 C -0.144 4.144 27 C -0.141 4.141 28 H 0.030 0.970 29 H 0.119 0.881 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.034 0.966 41 H -0.006 1.006 42 H 0.036 0.964 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.064 0.936 49 H 0.136 0.864 50 H 0.150 0.850 51 H 0.096 0.904 52 H 0.089 0.911 53 H 0.093 0.907 54 H 0.157 0.843 55 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.510 -10.969 -17.199 22.507 hybrid contribution -0.444 1.973 -0.129 2.027 sum 9.066 -8.996 -17.328 21.526 Atomic orbital electron populations 1.22120 0.96667 1.00195 1.02222 1.21235 0.95647 0.95169 1.00234 1.21570 0.96455 0.97587 0.96388 1.21528 0.96051 0.96528 1.00690 1.21755 1.00566 0.97085 1.01109 1.22046 0.88959 0.98032 0.95621 1.61853 1.14685 1.37618 1.09793 1.20076 0.92784 0.87040 0.96086 1.21979 1.32479 1.06799 0.93135 0.88186 1.25589 0.96746 1.00304 0.95597 1.70009 1.42991 1.33074 1.12700 0.86140 0.79391 0.80111 0.79807 1.19836 1.21760 1.18504 1.22177 1.00013 0.95793 0.88492 1.20008 1.00021 0.94329 0.90823 0.90261 1.21922 0.97239 0.97629 1.03210 1.19964 0.94328 0.99099 0.95188 1.21142 0.99052 1.00376 0.93578 1.21247 0.97701 1.00499 0.95309 1.20238 0.93809 0.98967 0.97344 1.20805 1.03121 1.02814 0.89980 1.21275 0.99621 1.00703 0.92834 1.21261 0.96804 0.99886 0.96174 0.96976 0.88120 0.94207 0.91767 0.93659 0.90989 0.92322 0.90930 0.91551 0.93261 0.95046 0.90890 0.96572 1.00611 0.96367 0.93113 0.91816 0.96215 0.92845 0.90474 0.93569 0.86399 0.84967 0.90449 0.91078 0.90715 0.84343 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 6.82 71.98 0.49 -5.36 16 2 C -0.09 -2.80 5.37 30.59 0.16 -2.63 16 3 C -0.10 -3.63 1.83 -10.79 -0.02 -3.65 16 4 C -0.11 -3.28 5.33 30.59 0.16 -3.11 16 5 C -0.15 -4.53 9.67 71.98 0.70 -3.84 16 6 C 0.08 2.83 3.83 86.30 0.33 3.16 16 7 N -0.52 -19.21 1.32 -900.79 -1.19 -20.40 16 8 C 0.17 7.66 3.65 85.56 0.31 7.97 16 9 C -0.51 -27.01 7.92 25.60 0.20 -26.81 16 10 H 0.10 5.57 2.93 -2.91 -0.01 5.56 16 11 C 0.01 0.80 5.47 84.66 0.46 1.27 16 12 N -0.95 -57.70 13.96 21.45 0.30 -57.40 16 13 Si 0.92 44.20 27.48 68.60 1.89 46.09 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 16 H -0.26 -12.01 6.52 99.48 0.65 -11.36 16 17 C 0.06 2.00 3.93 86.30 0.34 2.34 16 18 C -0.03 -0.87 2.56 -11.54 -0.03 -0.90 16 19 H 0.08 2.03 6.21 -2.38 -0.01 2.01 16 20 C -0.14 -3.80 8.98 71.98 0.65 -3.16 16 21 C -0.09 -2.07 4.78 -19.87 -0.09 -2.16 16 22 C -0.12 -2.94 8.77 22.27 0.20 -2.75 16 23 C -0.13 -2.69 9.70 22.27 0.22 -2.47 16 24 C -0.10 -1.95 5.88 -19.87 -0.12 -2.06 16 25 C -0.11 -1.40 10.01 71.23 0.71 -0.69 16 26 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 27 C -0.12 -2.65 9.67 22.27 0.22 -2.44 16 28 H 0.01 0.50 7.49 -2.38 -0.02 0.48 16 29 H 0.10 4.13 3.52 -2.39 -0.01 4.12 16 30 H 0.04 1.31 7.93 -2.39 -0.02 1.29 16 31 H 0.06 1.86 7.82 -2.39 -0.02 1.84 16 32 H 0.04 1.39 7.84 -2.38 -0.02 1.37 16 33 H 0.07 3.34 4.56 -2.39 -0.01 3.33 16 34 H 0.06 1.70 8.01 -2.39 -0.02 1.69 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.05 1.51 6.59 -2.39 -0.02 1.50 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 2.17 6.16 -2.39 -0.01 2.16 16 40 H 0.02 0.62 6.08 -2.39 -0.01 0.61 16 41 H -0.02 -1.14 6.81 -2.39 -0.02 -1.15 16 42 H 0.02 0.84 7.24 -2.39 -0.02 0.83 16 43 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.06 2.05 7.04 -2.38 -0.02 2.04 16 45 H 0.02 0.63 8.04 -2.39 -0.02 0.62 16 46 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.08 2.30 4.11 -2.39 -0.01 2.29 16 48 H 0.05 1.22 7.61 -2.39 -0.02 1.20 16 49 H 0.12 2.80 7.21 -2.90 -0.02 2.78 16 50 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 51 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.07 0.81 8.09 -2.38 -0.02 0.79 16 53 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 54 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 55 H 0.13 2.42 7.95 -2.91 -0.02 2.40 16 Total: -1.00 -61.20 399.82 6.88 -54.32 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.79 Total: 26.87 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 5.10 Total: -49.47 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -0.89 Total: -77.80 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.89 Total: 46.09 kcal Total: -61.20 6.88 -54.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474339126.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.637 kcal (2) G-P(sol) polarization free energy of solvation -61.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds