Wall clock time and date at job start Tue Mar 31 2020 12:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99751 * 2 1 4 4 H 1.48500 * 109.47236 * 274.39663 * 3 2 1 5 5 H 1.48496 * 109.47225 * 34.40404 * 3 2 1 6 6 H 1.48504 * 109.46763 * 154.40010 * 3 2 1 7 7 C 1.38813 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99552 * 338.51183 * 7 2 1 9 9 N 1.36938 * 120.00355 * 158.50893 * 7 2 1 10 10 C 1.46503 * 119.99783 * 308.06161 * 9 7 2 11 11 C 1.52999 * 117.50034 * 1.03530 * 10 9 7 12 12 C 1.52998 * 117.49768 * 292.37544 * 10 9 7 13 13 S 1.65602 * 119.99770 * 128.05722 * 9 7 2 14 14 O 1.42100 * 106.40461 * 341.33262 * 13 9 7 15 15 O 1.42094 * 106.40158 * 208.40422 * 13 9 7 16 16 C 1.76201 * 107.21518 * 94.86955 * 13 9 7 17 17 C 1.34987 * 124.15503 * 345.70684 * 16 13 9 18 18 S 1.71759 * 105.46202 * 179.97438 * 17 16 13 19 19 N 1.56149 * 97.28493 * 359.97438 * 18 17 16 20 20 C 1.30653 * 109.79008 * 0.02562 * 19 18 17 21 21 C 1.47563 * 122.11038 * 180.26935 * 20 19 18 22 22 O 1.21496 * 119.99832 * 185.05235 * 21 20 19 23 23 O 1.34742 * 120.00107 * 5.04536 * 21 20 19 24 24 H 0.97000 * 120.00484 * 359.97438 * 1 2 3 25 25 H 1.09003 * 115.54612 * 146.71047 * 10 9 7 26 26 H 1.08997 * 117.49923 * 0.02562 * 11 10 9 27 27 H 1.09000 * 117.49836 * 145.02107 * 11 10 9 28 28 H 1.09005 * 117.49757 * 214.97940 * 12 10 9 29 29 H 1.09000 * 117.49872 * 359.97438 * 12 10 9 30 30 H 1.07994 * 127.27174 * 359.95207 * 17 16 13 31 31 H 0.96702 * 116.99700 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4046 2.1002 -1.3959 5 1 1.4972 2.6240 0.7911 6 1 3.5911 1.4151 0.6050 7 6 2.0103 -1.2021 -0.0005 8 1 1.5266 -2.1051 0.3417 9 7 3.3083 -1.2431 -0.4350 10 6 3.6620 -0.6790 -1.7400 11 6 2.5409 -0.0366 -2.5593 12 6 3.1235 -1.3867 -2.9850 13 16 4.4780 -1.9303 0.5147 14 8 3.9496 -1.9748 1.8331 15 8 5.6962 -1.2762 0.1873 16 6 4.6562 -3.6040 -0.0065 17 6 3.7737 -4.2493 -0.7982 18 16 4.4113 -5.8312 -1.0004 19 7 5.6949 -5.6398 -0.1322 20 6 5.7274 -4.4249 0.3475 21 6 6.8306 -3.9491 1.2043 22 8 6.7776 -2.8432 1.7046 23 8 7.8966 -4.7411 1.4319 24 1 -0.4851 0.8400 0.0004 25 1 4.6535 -0.2307 -1.8051 26 1 1.5402 -0.0334 -2.1274 27 1 2.7948 0.8341 -3.1639 28 1 3.7605 -1.4035 -3.8694 29 1 2.5064 -2.2722 -2.8331 30 1 2.8594 -3.8544 -1.2160 31 1 8.5940 -4.3861 1.9999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069271.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:33 Heat of formation + Delta-G solvation = -89.543310 kcal Electronic energy + Delta-G solvation = -23404.896465 eV Core-core repulsion = 19713.532389 eV Total energy + Delta-G solvation = -3691.364076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.022 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99050 -40.06175 -39.18501 -37.95453 -37.47983 -36.55677 -34.80487 -33.42132 -33.01189 -28.69378 -26.68841 -24.57864 -23.35399 -22.70114 -22.09418 -20.50566 -19.96009 -19.56081 -18.91936 -18.78577 -18.03759 -17.46152 -17.08763 -16.72637 -16.30606 -15.67630 -15.41751 -15.28073 -15.09420 -14.91275 -14.71451 -13.70789 -13.40831 -13.17785 -13.02707 -12.91091 -12.89816 -12.80035 -12.71610 -12.46035 -12.26914 -12.16081 -12.05239 -11.81259 -11.68227 -11.45657 -10.97485 -10.57513 -10.25268 -9.64844 -8.50359 -6.21125 -0.86018 -0.57788 -0.23929 0.26586 0.38733 1.29636 1.37109 1.41311 1.48410 1.68668 2.23682 2.34485 2.74022 2.85131 3.20347 3.37792 3.80863 3.85661 3.95760 4.14491 4.22728 4.31236 4.40939 4.63450 4.68308 4.97479 5.19543 5.25650 5.55899 5.61085 5.68775 6.24209 6.61849 7.06560 7.13426 8.59519 Molecular weight = 318.02amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.006412 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.310907 B = 4365.987553 C = 4981.402279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.220 1.220 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.302 4.302 8 H 0.086 0.914 9 N -0.841 5.841 10 C 0.035 3.965 11 C -0.187 4.187 12 C -0.157 4.157 13 S 2.663 3.337 14 O -0.996 6.996 15 O -0.998 6.998 16 C -0.692 4.692 17 C -0.172 4.172 18 S 0.645 5.355 19 N -0.519 5.519 20 C 0.104 3.896 21 C 0.547 3.453 22 O -0.520 6.520 23 O -0.477 6.477 24 H 0.282 0.718 25 H 0.121 0.879 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.226 0.774 31 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 -11.123 -8.703 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.145 4.145 3 Si 0.711 3.289 4 H -0.142 1.142 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.439 4.439 8 H 0.104 0.896 9 N -0.672 5.672 10 C -0.072 4.072 11 C -0.226 4.226 12 C -0.197 4.197 13 S 2.761 3.239 14 O -0.986 6.986 15 O -0.988 6.988 16 C -0.791 4.791 17 C -0.321 4.321 18 S 0.799 5.201 19 N -0.356 5.356 20 C -0.067 4.067 21 C 0.385 3.615 22 O -0.409 6.409 23 O -0.290 6.290 24 H 0.092 0.908 25 H 0.139 0.861 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.242 0.758 31 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 7.485 -12.629 -8.678 17.054 hybrid contribution 0.594 2.636 1.520 3.101 sum 8.079 -9.993 -7.158 14.709 Atomic orbital electron populations 1.69861 1.06856 1.29267 1.45342 1.25898 0.95279 1.00367 0.92927 0.86739 0.79015 0.81935 0.81247 1.14224 1.21311 1.21916 1.18452 0.84839 0.95743 1.44916 0.89628 1.52466 1.17786 1.72199 1.24792 1.21896 0.98342 1.05313 0.81653 1.23539 0.99038 0.97643 1.02371 1.23460 1.03122 0.96156 0.96931 1.04045 0.72648 0.73674 0.73539 1.93399 1.80135 1.86921 1.38143 1.93376 1.47950 1.72813 1.84624 1.31260 1.03070 1.28921 1.15873 1.27714 1.03649 1.03620 0.97078 1.79942 1.02043 1.05509 1.32603 1.71927 1.26071 1.20645 1.17003 1.19099 0.95163 0.89534 1.02913 1.19976 0.81927 0.81722 0.77848 1.91048 1.79362 1.21664 1.48789 1.84547 1.29993 1.47346 1.67098 0.90796 0.86141 0.87851 0.87571 0.85844 0.87631 0.75774 0.69699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.13 13.97 21.65 0.30 -45.83 16 2 C 0.07 3.36 3.44 84.86 0.29 3.66 16 3 Si 0.89 41.90 25.16 68.60 1.73 43.63 16 4 H -0.22 -8.90 6.03 99.48 0.60 -8.30 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 7 C -0.30 -15.32 8.60 84.03 0.72 -14.60 16 8 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 9 N -0.84 -38.53 2.18 -322.93 -0.70 -39.23 16 10 C 0.03 1.34 4.91 44.99 0.22 1.56 16 11 C -0.19 -6.58 6.83 30.62 0.21 -6.37 16 12 C -0.16 -4.50 10.39 30.62 0.32 -4.18 16 13 S 2.66 129.99 4.26 -56.49 -0.24 129.75 16 14 O -1.00 -56.77 17.11 -127.18 -2.18 -58.95 16 15 O -1.00 -51.77 14.93 -119.06 -1.78 -53.55 16 16 C -0.69 -26.11 5.91 21.83 0.13 -25.98 16 17 C -0.17 -4.72 10.98 67.07 0.74 -3.99 16 18 S 0.65 12.48 23.20 -56.49 -1.31 11.16 16 19 N -0.52 -14.77 11.21 -75.26 -0.84 -15.61 16 20 C 0.10 3.70 6.66 42.09 0.28 3.98 16 21 C 0.55 20.15 8.29 70.28 0.58 20.73 16 22 O -0.52 -23.43 13.91 27.36 0.38 -23.05 16 23 O -0.48 -12.44 13.33 -56.52 -0.75 -13.19 16 24 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.12 4.56 7.55 -2.39 -0.02 4.54 16 26 H 0.10 4.27 5.11 -2.39 -0.01 4.26 16 27 H 0.11 3.22 7.93 -2.39 -0.02 3.20 16 28 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 29 H 0.11 2.82 7.73 -2.39 -0.02 2.80 16 30 H 0.23 5.34 7.64 -2.91 -0.02 5.31 16 31 H 0.44 6.51 9.11 -74.06 -0.67 5.84 16 Total: -1.00 -78.03 295.12 -1.47 -79.50 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.44 Total: 10.56 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 3.49 Total: -25.18 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -1.25 Total: -100.67 kcal Atomic # 8 Polarization: -144.42 SS G_CDS: -4.33 Total: -148.74 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.73 Total: 43.63 kcal Atomic # 16 Polarization: 142.46 SS G_CDS: -1.55 Total: 140.91 kcal Total: -78.03 -1.47 -79.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069271.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.044 kcal (2) G-P(sol) polarization free energy of solvation -78.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds