Wall clock time and date at job start Tue Mar 31 2020 12:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48494 * 109.47283 * 269.99384 * 3 2 1 5 5 H 1.48496 * 109.47353 * 30.00080 * 3 2 1 6 6 H 1.48504 * 109.47148 * 149.99557 * 3 2 1 7 7 C 1.38813 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00226 * 181.43936 * 7 2 1 9 9 N 1.36935 * 119.99992 * 1.44226 * 7 2 1 10 10 C 1.46504 * 120.00350 * 350.55474 * 9 7 2 11 11 C 1.52992 * 109.47079 * 82.73482 * 10 9 7 12 12 C 1.50699 * 109.47190 * 185.61616 * 11 10 9 13 13 O 1.20827 * 119.99881 * 359.97438 * 12 11 10 14 14 O 1.34233 * 120.00001 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99837 * 170.55511 * 9 7 2 16 16 C 1.50700 * 109.47385 * 83.37585 * 15 9 7 17 17 C 1.38184 * 120.41730 * 263.41869 * 16 15 9 18 18 N 1.31875 * 120.80236 * 179.72828 * 17 16 15 19 19 C 1.31898 * 121.76845 * 0.57746 * 18 17 16 20 20 C 1.38238 * 120.76171 * 359.68677 * 19 18 17 21 21 Cl 1.73601 * 120.43929 * 180.02562 * 20 19 18 22 22 C 1.38747 * 120.42204 * 83.69045 * 16 15 9 23 23 Cl 1.73600 * 120.80861 * 359.95690 * 22 16 15 24 24 H 0.97004 * 119.99682 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46995 * 202.73987 * 10 9 7 26 26 H 1.08997 * 109.46571 * 322.73783 * 10 9 7 27 27 H 1.09004 * 109.47486 * 305.61528 * 11 10 9 28 28 H 1.09001 * 109.47416 * 65.61814 * 11 10 9 29 29 H 0.96706 * 116.99552 * 180.02562 * 14 12 11 30 30 H 1.09008 * 109.46839 * 203.37466 * 15 9 7 31 31 H 1.08996 * 109.47203 * 323.36900 * 15 9 7 32 32 H 1.08003 * 119.59530 * 359.97438 * 17 16 15 33 33 H 1.08007 * 119.61921 * 179.70191 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0899 -1.2025 0.0240 9 7 1.3258 -2.3879 -0.0288 10 6 -0.1286 -2.3988 0.1476 11 6 -0.8066 -2.0864 -1.1878 12 6 -2.2938 -1.9615 -0.9789 13 8 -2.7633 -2.1077 0.1248 14 8 -3.0971 -1.6886 -2.0192 15 6 2.0479 -3.6455 -0.2366 16 6 2.6069 -4.1269 1.0775 17 6 3.9167 -3.8536 1.4227 18 7 4.4121 -4.2665 2.5730 19 6 3.6901 -4.9612 3.4308 20 6 2.3734 -5.2779 3.1531 21 17 1.4305 -6.1921 4.2884 22 6 1.8147 -4.8549 1.9535 23 17 0.1654 -5.2276 1.5605 24 1 -0.4850 0.8401 -0.0004 25 1 -0.4451 -3.3824 0.4946 26 1 -0.4109 -1.6458 0.8834 27 1 -0.4153 -1.1492 -1.5836 28 1 -0.6054 -2.8915 -1.8946 29 1 -4.0439 -1.6176 -1.8359 30 1 1.3648 -4.3947 -0.6371 31 1 2.8636 -3.4840 -0.9412 32 1 4.5411 -3.2915 0.7440 33 1 4.1325 -5.2861 4.3610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:00 Heat of formation + Delta-G solvation = -34.792592 kcal Electronic energy + Delta-G solvation = -22440.865980 eV Core-core repulsion = 18747.788660 eV Total energy + Delta-G solvation = -3693.077320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12547 -39.30274 -36.70391 -36.64201 -36.13415 -35.23313 -32.92194 -31.39535 -30.80504 -29.70943 -26.17258 -24.69112 -23.43654 -22.65875 -21.04123 -19.77768 -17.47012 -17.29034 -16.93517 -16.50631 -15.77418 -15.63121 -15.18972 -14.82973 -14.39191 -13.77856 -13.62314 -13.53231 -13.19040 -12.60934 -12.35931 -12.20215 -12.00067 -11.78526 -11.56655 -11.27147 -11.04614 -10.99692 -10.80664 -10.62909 -10.55265 -10.14040 -10.05637 -9.63039 -9.57860 -9.50720 -8.98932 -8.75195 -8.53376 -7.10918 -5.79422 -3.33971 1.00112 1.17683 1.90121 2.30533 3.20320 3.30357 3.37234 3.39008 3.72696 3.99984 4.37368 4.51835 4.75047 4.93471 5.18945 5.29465 5.45772 5.60053 5.72461 5.85382 6.20478 6.27794 6.37694 6.41688 6.59268 6.78588 6.83171 7.21167 7.43529 7.73334 7.81786 7.94088 8.27602 8.79049 9.07760 9.64198 10.05468 11.11092 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.005857 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.178654 B = 4779.174392 C = 6393.448378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.004 4.004 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.585 5.585 10 C 0.173 3.827 11 C -0.106 4.106 12 C 0.489 3.511 13 O -0.529 6.529 14 O -0.533 6.533 15 C 0.181 3.819 16 C -0.111 4.111 17 C 0.124 3.876 18 N -0.470 5.470 19 C 0.105 3.895 20 C -0.088 4.088 21 Cl -0.051 7.051 22 C 0.015 3.985 23 Cl -0.027 7.027 24 H 0.253 0.747 25 H 0.029 0.971 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.054 0.946 29 H 0.391 0.609 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.168 0.832 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -10.004 0.800 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.199 4.199 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.303 5.303 10 C 0.049 3.951 11 C -0.145 4.145 12 C 0.333 3.667 13 O -0.418 6.418 14 O -0.344 6.344 15 C 0.052 3.948 16 C -0.118 4.118 17 C -0.034 4.034 18 N -0.178 5.178 19 C -0.053 4.053 20 C -0.118 4.118 21 Cl -0.022 7.022 22 C -0.021 4.021 23 Cl 0.003 6.997 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.128 0.872 27 H 0.155 0.845 28 H 0.072 0.928 29 H 0.247 0.753 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.955 -9.795 1.288 10.311 hybrid contribution -1.426 0.782 0.105 1.630 sum 1.529 -9.012 1.393 9.247 Atomic orbital electron populations 1.70192 1.04804 1.24799 1.55758 1.24856 0.95736 0.98050 1.01307 0.86091 0.78679 0.83178 0.77623 1.21388 1.21690 1.20622 1.19369 0.91058 0.83187 1.43969 0.90421 1.44204 1.02887 1.00566 1.82669 1.21131 0.80237 0.99060 0.94713 1.22503 0.84217 1.04929 1.02857 1.24269 0.90877 0.70363 0.81197 1.90600 1.77325 1.47675 1.26155 1.84653 1.23043 1.84144 1.42594 1.19849 0.96450 0.89418 0.89124 1.22273 0.93822 0.94051 1.01657 1.22789 0.92495 0.95225 0.92862 1.67764 1.37354 1.09542 1.03161 1.22608 0.88192 0.95278 0.99235 1.21995 0.94737 1.02581 0.92450 1.98368 1.72281 1.72158 1.59413 1.21114 0.88248 0.98859 0.93877 1.98396 1.15664 1.92345 1.93311 0.93595 0.95312 0.87233 0.84487 0.92804 0.75292 0.91783 0.91547 0.81525 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.47 7.22 55.49 0.40 -23.07 16 2 C 0.00 -0.09 5.20 -17.43 -0.09 -0.18 16 3 Si 0.91 20.44 29.55 -169.99 -5.02 15.41 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.25 -5.90 9.75 -15.06 -0.15 -6.05 16 8 H 0.08 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.58 -12.73 2.55 -174.61 -0.44 -13.18 16 10 C 0.17 3.93 4.29 -4.04 -0.02 3.91 16 11 C -0.11 -2.26 5.20 -27.89 -0.15 -2.40 16 12 C 0.49 10.17 8.33 36.01 0.30 10.47 16 13 O -0.53 -12.30 16.66 -18.75 -0.31 -12.62 16 14 O -0.53 -9.14 13.42 -39.27 -0.53 -9.67 16 15 C 0.18 3.18 5.39 -5.19 -0.03 3.15 16 16 C -0.11 -1.88 5.43 -104.45 -0.57 -2.44 16 17 C 0.12 1.96 10.83 -17.55 -0.19 1.77 16 18 N -0.47 -7.36 10.36 -13.24 -0.14 -7.50 16 19 C 0.11 1.50 10.98 -17.52 -0.19 1.31 16 20 C -0.09 -1.33 6.35 -39.33 -0.25 -1.58 16 21 Cl -0.05 -0.69 28.12 -51.86 -1.46 -2.15 16 22 C 0.02 0.25 6.37 -39.14 -0.25 0.00 16 23 Cl -0.03 -0.45 23.75 -51.86 -1.23 -1.68 16 24 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 25 H 0.03 0.62 4.62 -51.93 -0.24 0.38 16 26 H 0.11 2.96 5.76 -51.93 -0.30 2.66 16 27 H 0.14 3.28 5.95 -51.93 -0.31 2.97 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.39 4.81 9.10 45.56 0.41 5.23 16 30 H 0.06 1.07 7.16 -51.92 -0.37 0.69 16 31 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 32 H 0.17 2.34 8.06 -52.48 -0.42 1.91 16 33 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -28.17 312.06 -7.64 -35.82 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.03 Total: 5.95 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -1.58 Total: 7.97 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.18 Total: -43.75 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.84 Total: -22.29 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -2.69 Total: -3.82 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.17 -7.64 -35.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.023 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds