Wall clock time and date at job start Tue Mar 31 2020 12:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48494 * 109.47283 * 269.99384 * 3 2 1 5 5 H 1.48496 * 109.47353 * 30.00080 * 3 2 1 6 6 H 1.48504 * 109.47148 * 149.99557 * 3 2 1 7 7 C 1.38813 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00226 * 181.43936 * 7 2 1 9 9 N 1.36935 * 119.99992 * 1.44226 * 7 2 1 10 10 C 1.46504 * 120.00350 * 350.55474 * 9 7 2 11 11 C 1.52992 * 109.47079 * 82.73482 * 10 9 7 12 12 C 1.50699 * 109.47190 * 185.61616 * 11 10 9 13 13 O 1.20827 * 119.99881 * 359.97438 * 12 11 10 14 14 O 1.34233 * 120.00001 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99837 * 170.55511 * 9 7 2 16 16 C 1.50700 * 109.47385 * 83.37585 * 15 9 7 17 17 C 1.38184 * 120.41730 * 263.41869 * 16 15 9 18 18 N 1.31875 * 120.80236 * 179.72828 * 17 16 15 19 19 C 1.31898 * 121.76845 * 0.57746 * 18 17 16 20 20 C 1.38238 * 120.76171 * 359.68677 * 19 18 17 21 21 Cl 1.73601 * 120.43929 * 180.02562 * 20 19 18 22 22 C 1.38747 * 120.42204 * 83.69045 * 16 15 9 23 23 Cl 1.73600 * 120.80861 * 359.95690 * 22 16 15 24 24 H 0.97004 * 119.99682 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46995 * 202.73987 * 10 9 7 26 26 H 1.08997 * 109.46571 * 322.73783 * 10 9 7 27 27 H 1.09004 * 109.47486 * 305.61528 * 11 10 9 28 28 H 1.09001 * 109.47416 * 65.61814 * 11 10 9 29 29 H 0.96706 * 116.99552 * 180.02562 * 14 12 11 30 30 H 1.09008 * 109.46839 * 203.37466 * 15 9 7 31 31 H 1.08996 * 109.47203 * 323.36900 * 15 9 7 32 32 H 1.08003 * 119.59530 * 359.97438 * 17 16 15 33 33 H 1.08007 * 119.61921 * 179.70191 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0899 -1.2025 0.0240 9 7 1.3258 -2.3879 -0.0288 10 6 -0.1286 -2.3988 0.1476 11 6 -0.8066 -2.0864 -1.1878 12 6 -2.2938 -1.9615 -0.9789 13 8 -2.7633 -2.1077 0.1248 14 8 -3.0971 -1.6886 -2.0192 15 6 2.0479 -3.6455 -0.2366 16 6 2.6069 -4.1269 1.0775 17 6 3.9167 -3.8536 1.4227 18 7 4.4121 -4.2665 2.5730 19 6 3.6901 -4.9612 3.4308 20 6 2.3734 -5.2779 3.1531 21 17 1.4305 -6.1921 4.2884 22 6 1.8147 -4.8549 1.9535 23 17 0.1654 -5.2276 1.5605 24 1 -0.4850 0.8401 -0.0004 25 1 -0.4451 -3.3824 0.4946 26 1 -0.4109 -1.6458 0.8834 27 1 -0.4153 -1.1492 -1.5836 28 1 -0.6054 -2.8915 -1.8946 29 1 -4.0439 -1.6176 -1.8359 30 1 1.3648 -4.3947 -0.6371 31 1 2.8636 -3.4840 -0.9412 32 1 4.5411 -3.2915 0.7440 33 1 4.1325 -5.2861 4.3610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:59 Heat of formation + Delta-G solvation = -51.077830 kcal Electronic energy + Delta-G solvation = -22441.572161 eV Core-core repulsion = 18747.788660 eV Total energy + Delta-G solvation = -3693.783501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35884 -40.91317 -38.16002 -37.84417 -37.52485 -36.80051 -34.39429 -32.73776 -32.42827 -31.27184 -27.67861 -26.37696 -24.67972 -24.11997 -22.53863 -21.43187 -19.07311 -18.64896 -18.31045 -17.95131 -17.39486 -16.99108 -16.74862 -16.46704 -15.78116 -15.30855 -14.95590 -14.86307 -14.78342 -14.05806 -13.88041 -13.63772 -13.35801 -13.23389 -12.93407 -12.80529 -12.63446 -12.51819 -12.29183 -12.21131 -12.09586 -11.85386 -11.83483 -11.27392 -11.23133 -10.76762 -10.36504 -10.27780 -9.95469 -8.85179 -7.64176 -5.17830 -0.21432 -0.06216 0.69323 1.07997 1.52267 1.55772 1.56412 1.61005 2.40538 2.58306 2.61566 3.34098 3.44426 3.55744 3.72248 3.85604 3.98238 4.35947 4.46183 4.57833 4.66636 4.77316 4.92968 5.05179 5.06905 5.18472 5.39229 5.60178 5.77314 5.96543 5.98756 6.43216 6.73934 7.22240 7.29336 7.89462 8.27782 9.23806 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.005857 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.178654 B = 4779.174392 C = 6393.448378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.053 4.053 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.309 1.309 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.087 0.913 9 N -0.597 5.597 10 C 0.185 3.815 11 C -0.101 4.101 12 C 0.495 3.505 13 O -0.559 6.559 14 O -0.523 6.523 15 C 0.181 3.819 16 C -0.125 4.125 17 C 0.124 3.876 18 N -0.479 5.479 19 C 0.114 3.886 20 C -0.094 4.094 21 Cl -0.036 7.036 22 C 0.003 3.997 23 Cl -0.033 7.033 24 H 0.239 0.761 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.415 0.585 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.183 0.817 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -11.074 0.793 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.213 1.213 5 H -0.236 1.236 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.105 0.895 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.141 4.141 12 C 0.340 3.660 13 O -0.450 6.450 14 O -0.335 6.335 15 C 0.054 3.946 16 C -0.131 4.131 17 C -0.033 4.033 18 N -0.188 5.188 19 C -0.044 4.044 20 C -0.124 4.124 21 Cl -0.008 7.008 22 C -0.033 4.033 23 Cl -0.004 7.004 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.093 0.907 29 H 0.275 0.725 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.200 0.800 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.032 -10.899 1.262 11.689 hybrid contribution -1.744 0.990 0.150 2.011 sum 2.288 -9.909 1.411 10.267 Atomic orbital electron populations 1.70422 1.05583 1.23910 1.57548 1.25406 0.96303 1.00219 1.02660 0.85306 0.77610 0.80481 0.77182 1.21324 1.23610 1.20061 1.19650 0.91556 0.83875 1.41870 0.89496 1.44275 1.02706 1.01518 1.83111 1.20792 0.81154 0.97908 0.94233 1.22294 0.84807 1.04423 1.02556 1.24078 0.91059 0.69756 0.81151 1.90590 1.77878 1.49158 1.27361 1.84568 1.24805 1.83253 1.40923 1.19969 0.96833 0.87854 0.89961 1.22134 0.94538 0.95320 1.01135 1.23055 0.92270 0.94800 0.93201 1.67846 1.37598 1.10014 1.03326 1.23146 0.87706 0.93756 0.99776 1.22112 0.95273 1.02709 0.92321 1.98374 1.72016 1.71697 1.58685 1.21323 0.87952 0.99330 0.94676 1.98389 1.16256 1.92334 1.93408 0.95060 0.94387 0.91665 0.86709 0.90697 0.72525 0.90975 0.89756 0.79991 0.78712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.90 7.22 21.65 0.16 -48.75 16 2 C -0.05 -2.64 5.20 84.86 0.44 -2.20 16 3 Si 0.96 42.30 29.55 68.60 2.03 44.32 16 4 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.24 -11.30 9.75 84.03 0.82 -10.48 16 8 H 0.09 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.60 -25.58 2.55 -706.35 -1.80 -27.38 16 10 C 0.18 8.39 4.29 86.38 0.37 8.76 16 11 C -0.10 -4.31 5.20 29.85 0.16 -4.16 16 12 C 0.49 20.40 8.33 71.24 0.59 20.99 16 13 O -0.56 -26.10 16.66 21.96 0.37 -25.73 16 14 O -0.52 -17.15 13.42 -51.45 -0.69 -17.85 16 15 C 0.18 6.10 5.39 85.63 0.46 6.56 16 16 C -0.13 -4.01 5.43 -19.76 -0.11 -4.12 16 17 C 0.12 3.65 10.83 84.67 0.92 4.57 16 18 N -0.48 -13.84 10.36 -195.80 -2.03 -15.87 16 19 C 0.11 2.96 10.98 84.68 0.93 3.89 16 20 C -0.09 -2.67 6.35 22.43 0.14 -2.53 16 21 Cl -0.04 -0.92 28.12 -2.72 -0.08 -1.00 16 22 C 0.00 0.10 6.37 22.56 0.14 0.25 16 23 Cl -0.03 -1.08 23.75 -2.72 -0.06 -1.15 16 24 H 0.24 12.87 8.31 -92.71 -0.77 12.10 16 25 H 0.04 1.64 4.62 -2.39 -0.01 1.63 16 26 H 0.07 3.61 5.76 -2.39 -0.01 3.59 16 27 H 0.12 5.54 5.95 -2.38 -0.01 5.53 16 28 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.41 9.42 9.10 -74.05 -0.67 8.74 16 30 H 0.07 2.29 7.16 -2.38 -0.02 2.27 16 31 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 32 H 0.18 4.66 8.06 -2.91 -0.02 4.63 16 33 H 0.20 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -60.09 312.06 3.27 -56.82 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.51 Total: 15.03 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 4.87 Total: 21.53 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -3.67 Total: -91.99 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.32 Total: -43.58 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.14 Total: -2.14 kcal Total: -60.09 3.27 -56.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.747 kcal (2) G-P(sol) polarization free energy of solvation -60.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds