Wall clock time and date at job start Tue Mar 31 2020 12:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48498 * 109.46937 * 239.99530 * 3 2 1 5 5 H 1.48491 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47163 * 120.00005 * 3 2 1 7 7 C 1.38814 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99896 * 203.64254 * 7 2 1 9 9 N 1.36930 * 120.00115 * 23.36417 * 7 2 1 10 10 C 1.46499 * 120.00069 * 213.64542 * 9 7 2 11 11 C 1.52995 * 109.47394 * 90.00296 * 10 9 7 12 12 C 1.50704 * 109.47465 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99531 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00290 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99841 * 33.64938 * 9 7 2 16 16 C 1.50693 * 109.47350 * 84.32633 * 15 9 7 17 17 N 1.31872 * 119.61434 * 269.72554 * 16 15 9 18 18 C 1.31839 * 121.75491 * 179.70891 * 17 16 15 19 19 C 1.38355 * 120.77088 * 0.56744 * 18 17 16 20 20 Cl 1.73604 * 120.42611 * 179.74643 * 19 18 17 21 21 C 1.38721 * 119.14971 * 359.72376 * 19 18 17 22 22 C 1.38318 * 119.61215 * 89.99990 * 16 15 9 23 23 Cl 1.73599 * 120.42460 * 0.02562 * 22 16 15 24 24 H 0.96997 * 119.99816 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47370 * 210.00424 * 10 9 7 26 26 H 1.09000 * 109.47329 * 329.99712 * 10 9 7 27 27 H 1.09003 * 109.46997 * 299.99830 * 11 10 9 28 28 H 1.09004 * 109.47424 * 59.99935 * 11 10 9 29 29 H 0.96693 * 117.00045 * 179.97438 * 14 12 11 30 30 H 1.09010 * 109.46953 * 204.32801 * 15 9 7 31 31 H 1.09000 * 109.47075 * 324.32128 * 15 9 7 32 32 H 1.07999 * 119.61749 * 180.29040 * 18 17 16 33 33 H 1.08009 * 120.79858 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0223 -1.2413 0.3757 9 7 1.4097 -2.3396 -0.4692 10 6 1.7242 -3.6369 0.1345 11 6 0.7575 -3.9102 1.2884 12 6 1.0814 -5.2444 1.9099 13 8 1.9918 -5.9086 1.4742 14 8 0.3580 -5.6952 2.9468 15 6 0.4528 -2.2593 -1.5756 16 6 1.1976 -2.2674 -2.8856 17 7 1.5779 -1.1263 -3.4261 18 6 2.2365 -1.0845 -4.5674 19 6 2.5444 -2.2479 -5.2500 20 17 3.4063 -2.1821 -6.7555 21 6 2.1559 -3.4677 -4.7157 22 6 1.4694 -3.4714 -3.5098 23 17 0.9578 -4.9680 -2.7940 24 1 -0.4850 0.8400 -0.0004 25 1 1.6247 -4.4208 -0.6163 26 1 2.7465 -3.6235 0.5123 27 1 0.8571 -3.1263 2.0393 28 1 -0.2649 -3.9236 0.9106 29 1 0.6031 -6.5564 3.3116 30 1 -0.2215 -3.1149 -1.5357 31 1 -0.1238 -1.3381 -1.4912 32 1 2.5353 -0.1308 -4.9766 33 1 2.3827 -4.3924 -5.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:47 Heat of formation + Delta-G solvation = -49.842403 kcal Electronic energy + Delta-G solvation = -22159.385262 eV Core-core repulsion = 18465.655333 eV Total energy + Delta-G solvation = -3693.729928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99037 -39.79217 -36.76103 -36.30537 -36.13247 -35.60294 -32.20991 -31.99884 -31.42988 -29.39953 -26.29268 -24.82583 -23.42276 -22.55602 -21.22288 -19.87786 -17.76458 -17.31069 -16.73386 -16.62261 -16.04313 -15.59847 -15.48515 -14.70096 -14.46497 -13.96280 -13.67258 -13.44224 -13.01462 -12.88611 -12.56655 -12.27621 -12.05345 -11.62715 -11.55137 -11.40777 -11.24538 -11.17372 -10.93740 -10.75812 -10.45425 -10.28426 -10.17200 -10.10517 -9.82853 -9.37649 -9.13525 -8.64484 -8.36582 -6.87949 -5.93257 -3.47056 1.12620 1.30322 1.97450 2.43905 2.62134 3.36501 3.42159 3.43655 3.51680 3.90939 4.44297 4.75292 4.85241 4.95844 5.27699 5.30004 5.42899 5.52209 5.67877 5.79998 5.95041 6.03627 6.16427 6.35328 6.49081 6.63528 6.71030 6.76794 6.94569 7.45348 7.71687 8.22632 8.27980 8.40262 8.98274 9.63559 10.14824 11.06718 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.005895 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.710177 B = 4749.002204 C = 6924.743772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.030 3.970 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.268 4.268 8 H 0.064 0.936 9 N -0.559 5.559 10 C 0.150 3.850 11 C -0.130 4.130 12 C 0.478 3.522 13 O -0.526 6.526 14 O -0.524 6.524 15 C 0.168 3.832 16 C 0.161 3.839 17 N -0.427 5.427 18 C 0.118 3.882 19 C -0.105 4.105 20 Cl -0.068 7.068 21 C -0.064 4.064 22 C -0.084 4.084 23 Cl -0.049 7.049 24 H 0.259 0.741 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.398 0.602 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.161 0.839 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -7.432 -6.175 9.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.172 4.172 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.397 4.397 8 H 0.082 0.918 9 N -0.277 5.277 10 C 0.023 3.977 11 C -0.171 4.171 12 C 0.321 3.679 13 O -0.415 6.415 14 O -0.335 6.335 15 C 0.041 3.959 16 C 0.019 3.981 17 N -0.136 5.136 18 C -0.041 4.041 19 C -0.134 4.134 20 Cl -0.039 7.039 21 C -0.091 4.091 22 C -0.115 4.115 23 Cl -0.021 7.021 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.178 0.822 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.257 -6.415 -6.028 8.806 hybrid contribution 1.008 -0.675 -0.388 1.274 sum 1.265 -7.090 -6.416 9.645 Atomic orbital electron populations 1.69861 1.05731 1.26453 1.49472 1.24977 0.94847 0.98661 0.98700 0.86414 0.79375 0.82987 0.78259 1.20494 1.21550 1.20985 1.19009 0.95528 0.85947 1.39171 0.91786 1.43729 1.50636 1.02583 1.30714 1.21037 0.95895 0.88410 0.92320 1.22345 1.04295 0.89340 1.01104 1.24344 0.78415 0.88796 0.76297 1.90661 1.30486 1.58753 1.61631 1.84652 1.60157 1.40950 1.47747 1.20328 0.91024 1.05055 0.79531 1.23183 0.93434 0.85188 0.96269 1.68112 1.09292 1.28112 1.08132 1.23021 0.93400 0.96959 0.90714 1.21885 1.04344 0.95622 0.91597 1.98347 1.75596 1.98734 1.31262 1.21261 0.95939 0.97744 0.94160 1.21941 1.04188 0.89317 0.96025 1.98347 1.89472 1.31531 1.82718 0.93059 0.92251 0.92810 0.87317 0.88445 0.74469 0.92638 0.85730 0.82200 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.89 11.25 55.49 0.62 -22.26 16 2 C 0.03 0.77 4.99 -17.43 -0.09 0.69 16 3 Si 0.90 20.95 29.61 -169.99 -5.03 15.92 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.27 -6.75 9.44 -15.06 -0.14 -6.89 16 8 H 0.06 1.66 7.93 -52.48 -0.42 1.24 16 9 N -0.56 -12.63 2.45 -174.61 -0.43 -13.06 16 10 C 0.15 3.01 4.93 -4.04 -0.02 2.99 16 11 C -0.13 -2.34 6.13 -27.88 -0.17 -2.51 16 12 C 0.48 7.89 8.33 36.01 0.30 8.19 16 13 O -0.53 -9.88 16.74 -18.75 -0.31 -10.19 16 14 O -0.52 -7.01 13.42 -39.25 -0.53 -7.53 16 15 C 0.17 3.61 5.24 -5.20 -0.03 3.58 16 16 C 0.16 3.20 6.33 -82.55 -0.52 2.68 16 17 N -0.43 -8.68 10.27 -9.42 -0.10 -8.78 16 18 C 0.12 1.97 10.99 -17.51 -0.19 1.78 16 19 C -0.10 -1.56 6.34 -39.36 -0.25 -1.81 16 20 Cl -0.07 -0.85 28.99 -51.86 -1.50 -2.35 16 21 C -0.06 -0.96 9.79 -39.21 -0.38 -1.35 16 22 C -0.08 -1.45 6.33 -39.36 -0.25 -1.70 16 23 Cl -0.05 -0.78 24.78 -51.86 -1.28 -2.06 16 24 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 25 H 0.06 1.14 5.21 -51.93 -0.27 0.87 16 26 H 0.05 1.13 8.00 -51.93 -0.42 0.72 16 27 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 28 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.40 3.41 9.10 45.56 0.41 3.82 16 30 H 0.06 1.10 6.78 -51.92 -0.35 0.74 16 31 H 0.13 3.07 5.30 -51.93 -0.28 2.79 16 32 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -28.28 320.72 -7.62 -35.89 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -2.14 Total: 3.95 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.74 Total: 5.65 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.10 Total: -44.10 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.84 Total: -17.72 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -2.79 Total: -4.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.28 -7.62 -35.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.951 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds