Wall clock time and date at job start Tue Mar 31 2020 12:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48498 * 109.46937 * 239.99530 * 3 2 1 5 5 H 1.48491 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47163 * 120.00005 * 3 2 1 7 7 C 1.38814 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99896 * 203.64254 * 7 2 1 9 9 N 1.36930 * 120.00115 * 23.36417 * 7 2 1 10 10 C 1.46499 * 120.00069 * 213.64542 * 9 7 2 11 11 C 1.52995 * 109.47394 * 90.00296 * 10 9 7 12 12 C 1.50704 * 109.47465 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99531 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00290 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99841 * 33.64938 * 9 7 2 16 16 C 1.50693 * 109.47350 * 84.32633 * 15 9 7 17 17 N 1.31872 * 119.61434 * 269.72554 * 16 15 9 18 18 C 1.31839 * 121.75491 * 179.70891 * 17 16 15 19 19 C 1.38355 * 120.77088 * 0.56744 * 18 17 16 20 20 Cl 1.73604 * 120.42611 * 179.74643 * 19 18 17 21 21 C 1.38721 * 119.14971 * 359.72376 * 19 18 17 22 22 C 1.38318 * 119.61215 * 89.99990 * 16 15 9 23 23 Cl 1.73599 * 120.42460 * 0.02562 * 22 16 15 24 24 H 0.96997 * 119.99816 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47370 * 210.00424 * 10 9 7 26 26 H 1.09000 * 109.47329 * 329.99712 * 10 9 7 27 27 H 1.09003 * 109.46997 * 299.99830 * 11 10 9 28 28 H 1.09004 * 109.47424 * 59.99935 * 11 10 9 29 29 H 0.96693 * 117.00045 * 179.97438 * 14 12 11 30 30 H 1.09010 * 109.46953 * 204.32801 * 15 9 7 31 31 H 1.09000 * 109.47075 * 324.32128 * 15 9 7 32 32 H 1.07999 * 119.61749 * 180.29040 * 18 17 16 33 33 H 1.08009 * 120.79858 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0223 -1.2413 0.3757 9 7 1.4097 -2.3396 -0.4692 10 6 1.7242 -3.6369 0.1345 11 6 0.7575 -3.9102 1.2884 12 6 1.0814 -5.2444 1.9099 13 8 1.9918 -5.9086 1.4742 14 8 0.3580 -5.6952 2.9468 15 6 0.4528 -2.2593 -1.5756 16 6 1.1976 -2.2674 -2.8856 17 7 1.5779 -1.1263 -3.4261 18 6 2.2365 -1.0845 -4.5674 19 6 2.5444 -2.2479 -5.2500 20 17 3.4063 -2.1821 -6.7555 21 6 2.1559 -3.4677 -4.7157 22 6 1.4694 -3.4714 -3.5098 23 17 0.9578 -4.9680 -2.7940 24 1 -0.4850 0.8400 -0.0004 25 1 1.6247 -4.4208 -0.6163 26 1 2.7465 -3.6235 0.5123 27 1 0.8571 -3.1263 2.0393 28 1 -0.2649 -3.9236 0.9106 29 1 0.6031 -6.5564 3.3116 30 1 -0.2215 -3.1149 -1.5357 31 1 -0.1238 -1.3381 -1.4912 32 1 2.5353 -0.1308 -4.9766 33 1 2.3827 -4.3924 -5.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:47 Heat of formation + Delta-G solvation = -66.423666 kcal Electronic energy + Delta-G solvation = -22160.104279 eV Core-core repulsion = 18465.655333 eV Total energy + Delta-G solvation = -3694.448946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35814 -41.10947 -38.09383 -37.59566 -37.51674 -36.95495 -33.87855 -33.45482 -32.88198 -30.97638 -27.91164 -26.48014 -24.76211 -24.03124 -22.69076 -21.40055 -19.13492 -18.85184 -18.14660 -17.99726 -17.41571 -16.97813 -16.89119 -16.50426 -15.91541 -15.43086 -15.24786 -14.88012 -14.45416 -14.18832 -14.10212 -13.63573 -13.38549 -13.07778 -13.03746 -12.85460 -12.77685 -12.63223 -12.46468 -12.30268 -12.07447 -12.03880 -11.89514 -11.52819 -11.37492 -10.65136 -10.53018 -10.50490 -9.71002 -8.69892 -7.82489 -5.40044 -0.20785 0.01982 0.73746 1.16939 1.29065 1.48785 1.53989 1.58739 2.21778 2.52081 2.60001 3.27975 3.46260 3.64528 3.65717 3.82120 4.04334 4.14908 4.25066 4.27647 4.62917 4.66489 4.79392 4.85534 4.92869 5.06929 5.25802 5.35424 5.66089 5.67974 5.76648 6.43559 6.96509 7.08761 7.14133 7.80617 8.30166 9.13811 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.005895 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.710177 B = 4749.002204 C = 6924.743772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.002 4.002 3 Si 0.941 3.059 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.272 4.272 8 H 0.051 0.949 9 N -0.571 5.571 10 C 0.153 3.847 11 C -0.124 4.124 12 C 0.493 3.507 13 O -0.550 6.550 14 O -0.514 6.514 15 C 0.175 3.825 16 C 0.139 3.861 17 N -0.466 5.466 18 C 0.109 3.891 19 C -0.091 4.091 20 Cl -0.037 7.037 21 C -0.056 4.056 22 C -0.086 4.086 23 Cl -0.038 7.038 24 H 0.254 0.746 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.423 0.577 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.180 0.820 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -8.785 -7.404 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.202 4.202 3 Si 0.771 3.229 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.401 4.401 8 H 0.068 0.932 9 N -0.289 5.289 10 C 0.027 3.973 11 C -0.165 4.165 12 C 0.336 3.664 13 O -0.441 6.441 14 O -0.327 6.327 15 C 0.048 3.952 16 C -0.002 4.002 17 N -0.175 5.175 18 C -0.050 4.050 19 C -0.121 4.121 20 Cl -0.008 7.008 21 C -0.082 4.082 22 C -0.116 4.116 23 Cl -0.009 7.009 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.285 0.715 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.822 -7.801 -7.252 10.683 hybrid contribution 0.866 -0.363 -0.138 0.949 sum 1.688 -8.163 -7.390 11.140 Atomic orbital electron populations 1.69953 1.06346 1.26263 1.51176 1.25359 0.95279 1.00250 0.99267 0.85770 0.78377 0.80971 0.77808 1.21197 1.21742 1.20692 1.19001 0.94972 0.87128 1.39039 0.93164 1.43764 1.50557 1.02568 1.32021 1.20974 0.95491 0.87693 0.93134 1.22056 1.03902 0.90243 1.00261 1.23756 0.78020 0.87964 0.76621 1.90662 1.31500 1.59295 1.62607 1.84564 1.59121 1.42674 1.46364 1.20057 0.90906 1.03809 0.80447 1.22809 0.94431 0.86388 0.96522 1.67977 1.10654 1.28982 1.09922 1.23331 0.93094 0.98599 0.89942 1.21912 1.02912 0.95043 0.92210 1.98366 1.74715 1.98676 1.29078 1.21579 0.94494 0.99008 0.93161 1.21896 1.04247 0.88891 0.96607 1.98347 1.89390 1.30445 1.82729 0.93615 0.91332 0.94361 0.88608 0.87961 0.71529 0.91616 0.88824 0.80277 0.80735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.14 11.25 21.65 0.24 -47.89 16 2 C 0.00 -0.09 4.99 84.86 0.42 0.33 16 3 Si 0.94 43.77 29.61 68.60 2.03 45.80 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.27 -14.05 9.44 84.04 0.79 -13.25 16 8 H 0.05 2.68 7.93 -2.91 -0.02 2.66 16 9 N -0.57 -26.24 2.45 -706.35 -1.73 -27.97 16 10 C 0.15 6.18 4.93 86.38 0.43 6.61 16 11 C -0.12 -4.44 6.13 29.85 0.18 -4.26 16 12 C 0.49 15.61 8.33 71.24 0.59 16.21 16 13 O -0.55 -19.93 16.74 21.97 0.37 -19.57 16 14 O -0.51 -12.55 13.42 -51.39 -0.69 -13.24 16 15 C 0.17 7.65 5.24 85.63 0.45 8.10 16 16 C 0.14 5.53 6.33 42.57 0.27 5.80 16 17 N -0.47 -18.91 10.27 -183.71 -1.89 -20.80 16 18 C 0.11 3.50 10.99 84.72 0.93 4.43 16 19 C -0.09 -2.49 6.34 22.41 0.14 -2.35 16 20 Cl -0.04 -0.81 28.99 -2.72 -0.08 -0.89 16 21 C -0.06 -1.52 9.79 22.51 0.22 -1.30 16 22 C -0.09 -2.84 6.33 22.41 0.14 -2.70 16 23 Cl -0.04 -1.14 24.78 -2.72 -0.07 -1.20 16 24 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 25 H 0.07 2.61 5.21 -2.39 -0.01 2.59 16 26 H 0.04 1.64 8.00 -2.39 -0.02 1.62 16 27 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 28 H 0.10 3.54 8.14 -2.38 -0.02 3.53 16 29 H 0.42 6.00 9.10 -74.06 -0.67 5.32 16 30 H 0.07 2.63 6.78 -2.38 -0.02 2.61 16 31 H 0.09 4.78 5.30 -2.39 -0.01 4.76 16 32 H 0.18 4.83 8.06 -2.91 -0.02 4.80 16 33 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -61.12 320.72 3.27 -57.85 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.51 Total: 10.29 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 4.57 Total: 17.62 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -3.37 Total: -96.66 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.32 Total: -32.81 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.15 Total: -2.09 kcal Total: -61.12 3.27 -57.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.571 kcal (2) G-P(sol) polarization free energy of solvation -61.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds